Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39433 * 119.54649 * 2 1 4 4 C 1.35992 * 121.08659 * 180.02562 * 3 2 1 5 5 C 1.40825 * 119.73798 * 0.02562 * 4 3 2 6 6 N 1.33274 * 120.99368 * 180.02562 * 5 4 3 7 7 C 1.31882 * 121.29601 * 179.97438 * 6 5 4 8 8 C 1.48271 * 119.23952 * 179.97438 * 7 6 5 9 9 O 1.21503 * 120.00347 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99880 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00203 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47391 * 173.21949 * 11 10 8 13 13 H 1.09004 * 109.87020 * 57.34393 * 12 11 10 14 14 C 1.54319 * 109.88215 * 178.35965 * 12 11 10 15 15 C 1.55157 * 102.93821 * 141.60966 * 14 12 11 16 16 C 1.54908 * 101.58487 * 324.49550 * 15 14 12 17 17 N 1.47015 * 109.88003 * 296.17060 * 12 11 10 18 18 C 1.36937 * 125.64992 * 61.60591 * 17 12 11 19 19 H 1.08009 * 119.99993 * 324.43729 * 18 17 12 20 20 C 1.38819 * 120.00342 * 144.43940 * 18 17 12 21 21 N 1.31614 * 120.00163 * 162.71235 * 20 18 17 22 22 Si 1.86798 * 119.99635 * 342.71836 * 20 18 17 23 23 H 1.48494 * 109.47468 * 95.08414 * 22 20 18 24 24 H 1.48501 * 109.46914 * 215.08321 * 22 20 18 25 25 H 1.48499 * 109.47135 * 335.08281 * 22 20 18 26 26 C 1.40279 * 121.52416 * 0.25437 * 7 6 5 27 27 C 1.36501 * 119.81221 * 359.50428 * 26 7 6 28 28 C 1.40755 * 118.24463 * 0.45760 * 27 26 7 29 29 C 1.36128 * 119.54281 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47159 * 269.98149 * 1 2 3 31 31 H 1.09005 * 109.46652 * 29.97701 * 1 2 3 32 32 H 1.08998 * 109.47512 * 149.97590 * 1 2 3 33 33 H 1.08002 * 119.45377 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.13100 * 179.97438 * 4 3 2 35 35 H 0.96998 * 120.00256 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.47477 * 53.21315 * 11 10 8 37 37 H 1.09008 * 109.47214 * 293.21426 * 11 10 8 38 38 H 1.08995 * 110.72598 * 259.97029 * 14 12 11 39 39 H 1.09004 * 110.71894 * 23.25021 * 14 12 11 40 40 H 1.08994 * 111.00659 * 82.57500 * 15 14 12 41 41 H 1.09002 * 111.00230 * 206.42596 * 15 14 12 42 42 H 1.09000 * 110.36958 * 278.17475 * 16 15 14 43 43 H 1.09001 * 110.36758 * 155.84425 * 16 15 14 44 44 H 0.96996 * 119.99835 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.09446 * 179.74330 * 26 7 6 46 46 H 1.08005 * 120.88233 * 180.24643 * 27 26 7 47 47 H 1.08000 * 120.17429 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5540 1.2496 -0.0005 5 6 4.2852 0.0460 -0.0016 6 7 5.6179 0.0526 -0.0016 7 6 6.3086 -1.0709 -0.0022 8 6 7.7900 -1.0103 -0.0027 9 8 8.4401 -2.0369 -0.0037 10 7 8.4157 0.1834 -0.0032 11 6 9.8794 0.2433 -0.0044 12 6 10.3304 1.6954 -0.1751 13 1 9.9075 2.3105 0.6193 14 6 11.8710 1.7745 -0.1363 15 6 12.1909 2.8479 -1.2101 16 6 11.0958 2.5650 -2.2686 17 7 9.9001 2.2017 -1.4865 18 6 8.6034 2.3160 -1.9116 19 1 7.8710 1.5795 -1.6153 20 6 8.2301 3.3784 -2.7235 21 7 7.1060 3.3221 -3.4056 22 14 9.3236 4.8878 -2.8478 23 1 10.2118 4.7596 -4.0309 24 1 8.4787 6.1005 -2.9922 25 1 10.1494 5.0034 -1.6190 26 6 5.6740 -2.3220 -0.0080 27 6 4.3108 -2.3915 -0.0031 28 6 3.5824 -1.1870 -0.0021 29 6 2.1782 -1.1843 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6384 2.1388 -0.0004 34 1 4.0709 2.1978 -0.0009 35 1 7.8968 1.0029 -0.0029 36 1 10.2670 -0.3567 -0.8277 37 1 10.2598 -0.1466 0.9399 38 1 12.2162 2.0970 0.8460 39 1 12.3133 0.8155 -0.4061 40 1 12.0883 3.8528 -0.8007 41 1 13.1863 2.6978 -1.6281 42 1 11.3945 1.7371 -2.9116 43 1 10.9032 3.4580 -2.8632 44 1 6.8450 4.0646 -3.9725 45 1 6.2624 -3.2276 -0.0125 46 1 3.8043 -3.3454 -0.0035 47 1 1.6336 -2.1169 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028016468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = 47.575799 kcal Electronic energy + Delta-G solvation = -29179.878895 eV Core-core repulsion = 25328.174166 eV Total energy + Delta-G solvation = -3851.704730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87481 -39.21681 -37.94370 -37.04638 -34.14118 -33.39269 -32.60874 -32.11406 -30.19209 -29.94406 -29.47118 -27.42219 -25.08252 -24.26400 -23.79818 -22.78270 -21.98626 -20.95223 -20.00986 -19.64314 -18.05559 -17.71555 -16.74127 -16.55153 -16.19136 -15.26672 -15.25749 -14.99744 -14.55648 -14.30428 -14.19282 -14.14498 -13.75277 -13.59945 -13.31163 -13.05859 -12.95167 -12.94256 -12.48358 -12.43735 -12.29972 -11.93168 -11.52099 -11.41735 -11.32015 -11.25905 -11.16737 -10.88049 -10.70579 -10.51822 -10.46098 -10.17929 -9.92637 -9.78395 -9.50438 -9.23295 -8.66765 -8.56418 -8.34821 -8.12787 -6.81863 -5.96403 -3.41631 0.31933 0.76677 2.02738 2.59732 3.32269 3.45630 3.48276 3.51170 3.62772 4.25207 4.30742 4.52858 4.56735 4.71112 4.76180 4.92248 4.98677 5.03504 5.15286 5.16816 5.29138 5.35277 5.40285 5.45850 5.48536 5.51207 5.55147 5.72078 5.82558 5.85418 5.96110 5.99280 6.05765 6.09957 6.13121 6.14076 6.27415 6.31559 6.35954 6.40499 6.48103 6.56594 6.59321 6.85962 6.86422 6.87342 7.05197 7.82883 7.91059 8.20484 8.36242 8.70605 8.85892 9.67149 10.24297 11.17690 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.003594 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.131292 B = 7788.208739 C = 9603.470525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.110 4.110 4 C -0.067 4.067 5 C 0.123 3.877 6 N -0.423 5.423 7 C 0.118 3.882 8 C 0.563 3.437 9 O -0.553 6.553 10 N -0.682 5.682 11 C 0.113 3.887 12 C 0.143 3.857 13 H 0.049 0.951 14 C -0.120 4.120 15 C -0.136 4.136 16 C 0.118 3.882 17 N -0.601 5.601 18 C -0.256 4.256 19 H 0.097 0.903 20 C 0.036 3.964 21 N -0.899 5.899 22 Si 0.887 3.113 23 H -0.289 1.289 24 H -0.305 1.305 25 H -0.269 1.269 26 C -0.122 4.122 27 C -0.072 4.072 28 C -0.084 4.084 29 C -0.111 4.111 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.423 0.577 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.040 0.960 44 H 0.262 0.738 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -6.909 9.207 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.130 4.130 4 C -0.085 4.085 5 C 0.000 4.000 6 N -0.134 5.134 7 C -0.036 4.036 8 C 0.347 3.653 9 O -0.432 6.432 10 N -0.335 5.335 11 C -0.013 4.013 12 C 0.035 3.965 13 H 0.066 0.934 14 C -0.159 4.159 15 C -0.174 4.174 16 C -0.006 4.006 17 N -0.327 5.327 18 C -0.384 4.384 19 H 0.114 0.886 20 C -0.165 4.165 21 N -0.541 5.541 22 Si 0.719 3.281 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.194 1.194 26 C -0.143 4.143 27 C -0.098 4.098 28 C -0.086 4.086 29 C -0.130 4.130 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.165 0.835 46 H 0.160 0.840 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.845 -6.631 9.060 13.150 hybrid contribution -0.122 0.543 -0.454 0.719 sum -6.967 -6.087 8.606 12.636 Atomic orbital electron populations 1.20842 0.90932 1.03031 1.02390 1.19729 0.96359 0.93078 0.98404 1.20795 0.93996 0.97739 1.00504 1.21008 0.93512 0.97437 0.96582 1.18865 0.88949 0.92875 0.99354 1.67924 1.07387 1.29628 1.08494 1.21425 0.94684 0.89399 0.98096 1.17891 0.85627 0.84330 0.77500 1.90711 1.66052 1.34282 1.52129 1.46127 1.08146 1.08892 1.70300 1.22029 0.79442 0.99341 1.00465 1.21280 0.92842 0.91965 0.90379 0.93354 1.22485 0.95253 0.99251 0.98913 1.22781 0.98485 0.98883 0.97281 1.21881 0.87359 0.97727 0.93642 1.44708 1.01877 1.76406 1.09734 1.18784 0.83735 1.06485 1.29400 0.88594 1.25415 0.95598 0.97326 0.98121 1.69820 1.23937 1.31924 1.28406 0.86738 0.79682 0.83589 0.78093 1.21726 1.23310 1.19373 1.21721 0.95015 0.98870 0.98704 1.21362 0.93676 0.97588 0.97197 1.18933 0.94765 0.94029 1.00848 1.20753 0.92119 0.98098 1.02000 0.91010 0.91236 0.91453 0.85220 0.83857 0.73552 0.91393 0.92626 0.91384 0.91224 0.91591 0.91566 0.95128 0.94193 0.92762 0.83456 0.84049 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.98 36.01 0.36 -0.50 16 2 C -0.08 -0.82 5.85 -104.93 -0.61 -1.44 16 3 C -0.11 -1.34 9.58 -39.94 -0.38 -1.72 16 4 C -0.07 -1.02 9.99 -39.41 -0.39 -1.41 16 5 C 0.12 2.09 6.61 -84.85 -0.56 1.53 16 6 N -0.42 -8.09 9.47 -7.54 -0.07 -8.16 16 7 C 0.12 2.19 6.75 -82.95 -0.56 1.63 16 8 C 0.56 11.37 7.81 -12.13 -0.09 11.27 16 9 O -0.55 -11.85 16.26 5.36 0.09 -11.77 16 10 N -0.68 -13.80 4.32 -61.11 -0.26 -14.07 16 11 C 0.11 2.11 5.16 -4.04 -0.02 2.09 16 12 C 0.14 2.71 3.31 -66.96 -0.22 2.49 16 13 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.12 -1.86 6.48 -24.90 -0.16 -2.02 16 15 C -0.14 -2.28 7.08 -24.58 -0.17 -2.46 16 16 C 0.12 2.52 6.19 -2.53 -0.02 2.51 16 17 N -0.60 -13.95 2.68 -162.57 -0.44 -14.39 16 18 C -0.26 -6.94 9.51 -15.06 -0.14 -7.08 16 19 H 0.10 2.73 5.49 -52.48 -0.29 2.44 16 20 C 0.04 1.03 5.45 -17.43 -0.10 0.93 16 21 N -0.90 -27.06 13.97 55.49 0.78 -26.28 16 22 Si 0.89 22.26 24.78 -169.99 -4.21 18.05 16 23 H -0.29 -7.21 6.87 56.52 0.39 -6.82 16 24 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.27 -6.50 6.99 56.52 0.40 -6.11 16 26 C -0.12 -1.87 9.54 -39.44 -0.38 -2.24 16 27 C -0.07 -0.93 9.88 -39.26 -0.39 -1.32 16 28 C -0.08 -1.19 5.75 -106.72 -0.61 -1.80 16 29 C -0.11 -1.27 9.37 -39.52 -0.37 -1.64 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.42 9.07 5.61 -40.82 -0.23 8.84 16 36 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 37 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 0.93 3.18 -51.93 -0.17 0.76 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.15 2.05 7.60 -52.49 -0.40 1.65 16 46 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 47 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -33.02 378.26 -9.80 -42.82 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.55 Total: 9.29 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -4.83 Total: -1.19 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.00 Total: -62.90 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.21 Total: 18.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.02 -9.80 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028016468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.397 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds