Wall clock time and date at job start Tue Mar 31 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39433 * 119.54649 * 2 1 4 4 C 1.35992 * 121.08659 * 180.02562 * 3 2 1 5 5 C 1.40825 * 119.73798 * 0.02562 * 4 3 2 6 6 N 1.33274 * 120.99368 * 180.02562 * 5 4 3 7 7 C 1.31882 * 121.29601 * 179.97438 * 6 5 4 8 8 C 1.48271 * 119.23952 * 179.97438 * 7 6 5 9 9 O 1.21503 * 120.00347 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99880 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00203 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47391 * 173.21949 * 11 10 8 13 13 H 1.09004 * 109.87020 * 57.34393 * 12 11 10 14 14 C 1.54319 * 109.88215 * 178.35965 * 12 11 10 15 15 C 1.55157 * 102.93821 * 141.60966 * 14 12 11 16 16 C 1.54908 * 101.58487 * 324.49550 * 15 14 12 17 17 N 1.47015 * 109.88003 * 296.17060 * 12 11 10 18 18 C 1.36937 * 125.64992 * 61.60591 * 17 12 11 19 19 H 1.08009 * 119.99993 * 324.43729 * 18 17 12 20 20 C 1.38819 * 120.00342 * 144.43940 * 18 17 12 21 21 N 1.31614 * 120.00163 * 162.71235 * 20 18 17 22 22 Si 1.86798 * 119.99635 * 342.71836 * 20 18 17 23 23 H 1.48494 * 109.47468 * 95.08414 * 22 20 18 24 24 H 1.48501 * 109.46914 * 215.08321 * 22 20 18 25 25 H 1.48499 * 109.47135 * 335.08281 * 22 20 18 26 26 C 1.40279 * 121.52416 * 0.25437 * 7 6 5 27 27 C 1.36501 * 119.81221 * 359.50428 * 26 7 6 28 28 C 1.40755 * 118.24463 * 0.45760 * 27 26 7 29 29 C 1.36128 * 119.54281 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47159 * 269.98149 * 1 2 3 31 31 H 1.09005 * 109.46652 * 29.97701 * 1 2 3 32 32 H 1.08998 * 109.47512 * 149.97590 * 1 2 3 33 33 H 1.08002 * 119.45377 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.13100 * 179.97438 * 4 3 2 35 35 H 0.96998 * 120.00256 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.47477 * 53.21315 * 11 10 8 37 37 H 1.09008 * 109.47214 * 293.21426 * 11 10 8 38 38 H 1.08995 * 110.72598 * 259.97029 * 14 12 11 39 39 H 1.09004 * 110.71894 * 23.25021 * 14 12 11 40 40 H 1.08994 * 111.00659 * 82.57500 * 15 14 12 41 41 H 1.09002 * 111.00230 * 206.42596 * 15 14 12 42 42 H 1.09000 * 110.36958 * 278.17475 * 16 15 14 43 43 H 1.09001 * 110.36758 * 155.84425 * 16 15 14 44 44 H 0.96996 * 119.99835 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.09446 * 179.74330 * 26 7 6 46 46 H 1.08005 * 120.88233 * 180.24643 * 27 26 7 47 47 H 1.08000 * 120.17429 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5540 1.2496 -0.0005 5 6 4.2852 0.0460 -0.0016 6 7 5.6179 0.0526 -0.0016 7 6 6.3086 -1.0709 -0.0022 8 6 7.7900 -1.0103 -0.0027 9 8 8.4401 -2.0369 -0.0037 10 7 8.4157 0.1834 -0.0032 11 6 9.8794 0.2433 -0.0044 12 6 10.3304 1.6954 -0.1751 13 1 9.9075 2.3105 0.6193 14 6 11.8710 1.7745 -0.1363 15 6 12.1909 2.8479 -1.2101 16 6 11.0958 2.5650 -2.2686 17 7 9.9001 2.2017 -1.4865 18 6 8.6034 2.3160 -1.9116 19 1 7.8710 1.5795 -1.6153 20 6 8.2301 3.3784 -2.7235 21 7 7.1060 3.3221 -3.4056 22 14 9.3236 4.8878 -2.8478 23 1 10.2118 4.7596 -4.0309 24 1 8.4787 6.1005 -2.9922 25 1 10.1494 5.0034 -1.6190 26 6 5.6740 -2.3220 -0.0080 27 6 4.3108 -2.3915 -0.0031 28 6 3.5824 -1.1870 -0.0021 29 6 2.1782 -1.1843 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6384 2.1388 -0.0004 34 1 4.0709 2.1978 -0.0009 35 1 7.8968 1.0029 -0.0029 36 1 10.2670 -0.3567 -0.8277 37 1 10.2598 -0.1466 0.9399 38 1 12.2162 2.0970 0.8460 39 1 12.3133 0.8155 -0.4061 40 1 12.0883 3.8528 -0.8007 41 1 13.1863 2.6978 -1.6281 42 1 11.3945 1.7371 -2.9116 43 1 10.9032 3.4580 -2.8632 44 1 6.8450 4.0646 -3.9725 45 1 6.2624 -3.2276 -0.0125 46 1 3.8043 -3.3454 -0.0035 47 1 1.6336 -2.1169 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028016468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:02 Heat of formation + Delta-G solvation = 26.412286 kcal Electronic energy + Delta-G solvation = -29180.796614 eV Core-core repulsion = 25328.174166 eV Total energy + Delta-G solvation = -3852.622449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05181 -40.68851 -39.47267 -38.21139 -35.67202 -34.63918 -34.53517 -33.13043 -31.77635 -31.27922 -30.95447 -28.44349 -26.62555 -25.76996 -25.14685 -24.03737 -23.04890 -22.43955 -21.53399 -21.16400 -19.53523 -18.98059 -18.28430 -17.93719 -17.80524 -16.78878 -16.61815 -16.46192 -16.09603 -15.50986 -15.38778 -15.24723 -15.12496 -14.93920 -14.83915 -14.31536 -14.18879 -14.08405 -14.02795 -13.83910 -13.62351 -13.14950 -13.04973 -12.95626 -12.65100 -12.44994 -12.37561 -12.27053 -12.18052 -12.09735 -11.73690 -11.63321 -11.52140 -11.39470 -11.33338 -10.67455 -10.53353 -10.03245 -9.71156 -9.18107 -8.75339 -8.14121 -5.55668 -0.82331 -0.34460 0.92302 1.29071 1.37644 1.38631 1.50157 2.11753 2.25248 2.43866 3.00340 3.07379 3.10724 3.34847 3.55652 3.68302 3.79254 3.88155 3.91207 3.98346 4.02603 4.12139 4.17828 4.30416 4.34489 4.42201 4.45618 4.62767 4.67483 4.72515 4.77751 4.82693 4.91163 4.93103 4.98316 4.99715 5.01938 5.06360 5.13657 5.23135 5.30132 5.31699 5.46649 5.48398 5.49028 5.55753 5.87667 5.90507 6.24660 6.42678 6.75334 6.84665 7.12686 7.56841 8.21478 9.03820 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.003594 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.131292 B = 7788.208739 C = 9603.470525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.095 4.095 4 C -0.107 4.107 5 C 0.092 3.908 6 N -0.462 5.462 7 C 0.088 3.912 8 C 0.557 3.443 9 O -0.573 6.573 10 N -0.690 5.690 11 C 0.116 3.884 12 C 0.138 3.862 13 H 0.047 0.953 14 C -0.108 4.108 15 C -0.125 4.125 16 C 0.105 3.895 17 N -0.618 5.618 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.024 4.024 21 N -0.950 5.950 22 Si 0.950 3.050 23 H -0.287 1.287 24 H -0.314 1.314 25 H -0.252 1.252 26 C -0.138 4.138 27 C -0.049 4.049 28 C -0.094 4.094 29 C -0.103 4.103 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.415 0.585 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.029 0.971 43 H 0.021 0.979 44 H 0.259 0.741 45 H 0.157 0.843 46 H 0.192 0.808 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -8.065 10.570 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.125 4.125 5 C -0.032 4.032 6 N -0.174 5.174 7 C -0.065 4.065 8 C 0.342 3.658 9 O -0.453 6.453 10 N -0.341 5.341 11 C -0.009 4.009 12 C 0.031 3.969 13 H 0.065 0.935 14 C -0.146 4.146 15 C -0.163 4.163 16 C -0.019 4.019 17 N -0.345 5.345 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.220 4.220 21 N -0.595 5.595 22 Si 0.781 3.219 23 H -0.215 1.215 24 H -0.244 1.244 25 H -0.176 1.176 26 C -0.159 4.159 27 C -0.075 4.075 28 C -0.096 4.096 29 C -0.121 4.121 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.172 0.828 34 H 0.139 0.861 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.068 0.932 45 H 0.175 0.825 46 H 0.209 0.791 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.400 -7.797 10.455 14.995 hybrid contribution -0.103 0.835 -0.850 1.196 sum -7.503 -6.962 9.605 14.036 Atomic orbital electron populations 1.20923 0.87733 1.04368 1.03834 1.20198 0.98527 0.92155 0.96541 1.21168 0.92727 0.99840 0.97696 1.21011 0.95052 0.96398 1.00087 1.19253 0.88510 0.94803 1.00604 1.67790 1.09051 1.30557 1.10017 1.21373 0.93756 0.90852 1.00486 1.18288 0.86776 0.83939 0.76783 1.90663 1.66830 1.34566 1.53267 1.46247 1.08791 1.08676 1.70369 1.22059 0.78774 0.99103 1.00984 1.21520 0.95884 0.91370 0.88089 0.93548 1.22518 0.91742 0.99889 1.00474 1.22754 0.98355 0.99225 0.95927 1.22069 0.88133 0.96751 0.94936 1.44856 1.01144 1.76445 1.12017 1.18784 0.85263 1.05221 1.27615 0.91189 1.26028 0.97085 1.00161 0.98733 1.69963 1.26421 1.32680 1.30402 0.85723 0.77873 0.79712 0.78608 1.21515 1.24379 1.17647 1.21844 0.96387 0.97703 0.99965 1.21876 0.92566 0.99069 0.93941 1.19266 0.96377 0.93330 1.00665 1.21214 0.90696 1.00108 1.00131 0.89297 0.90481 0.89655 0.82836 0.86143 0.74548 0.93172 0.90067 0.87916 0.89597 0.91607 0.88036 0.95332 0.96079 0.93184 0.82515 0.79079 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.98 71.24 0.71 -0.49 16 2 C -0.07 -1.41 5.85 -20.07 -0.12 -1.53 16 3 C -0.09 -2.25 9.58 22.04 0.21 -2.04 16 4 C -0.11 -3.49 9.99 22.38 0.22 -3.27 16 5 C 0.09 3.30 6.61 40.47 0.27 3.57 16 6 N -0.46 -19.27 9.47 -177.77 -1.68 -20.96 16 7 C 0.09 3.49 6.75 42.30 0.29 3.78 16 8 C 0.56 23.96 7.81 86.91 0.68 24.64 16 9 O -0.57 -25.61 16.26 -3.72 -0.06 -25.67 16 10 N -0.69 -29.66 4.32 -465.54 -2.01 -31.68 16 11 C 0.12 4.40 5.16 86.38 0.45 4.84 16 12 C 0.14 5.15 3.31 45.34 0.15 5.30 16 13 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 14 C -0.11 -2.97 6.48 31.78 0.21 -2.77 16 15 C -0.12 -3.77 7.08 31.99 0.23 -3.54 16 16 C 0.11 4.39 6.19 86.85 0.54 4.92 16 17 N -0.62 -29.04 2.68 -668.25 -1.79 -30.83 16 18 C -0.24 -13.58 9.51 84.04 0.80 -12.79 16 19 H 0.07 4.30 5.49 -2.91 -0.02 4.29 16 20 C -0.02 -1.43 5.45 84.86 0.46 -0.97 16 21 N -0.95 -60.49 13.97 21.65 0.30 -60.19 16 22 Si 0.95 47.59 24.78 68.60 1.70 49.29 16 23 H -0.29 -14.10 6.87 99.48 0.68 -13.42 16 24 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 25 H -0.25 -11.76 6.99 99.48 0.70 -11.06 16 26 C -0.14 -4.29 9.54 22.36 0.21 -4.08 16 27 C -0.05 -1.18 9.88 22.48 0.22 -0.96 16 28 C -0.09 -2.60 5.75 -21.22 -0.12 -2.72 16 29 C -0.10 -2.02 9.37 22.31 0.21 -1.81 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.75 8.08 -2.38 -0.02 0.73 16 32 H 0.08 0.67 8.07 -2.39 -0.02 0.65 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.42 19.31 5.61 -92.71 -0.52 18.79 16 36 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 37 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 2.13 7.85 -2.39 -0.02 2.11 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.02 0.97 3.18 -2.39 -0.01 0.96 16 44 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 45 H 0.16 4.41 7.60 -2.91 -0.02 4.38 16 46 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -79.03 378.26 2.51 -76.52 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.44 Total: 33.40 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.61 Total: 10.11 kcal Atomic # 7 Polarization: -138.47 SS G_CDS: -5.19 Total: -143.65 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.70 Total: 49.29 kcal Total: -79.03 2.51 -76.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028016468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.933 kcal (2) G-P(sol) polarization free energy of solvation -79.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds