Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.36538 * 120.08751 * 2 1 4 4 C 1.40726 * 118.23720 * 180.28528 * 3 2 1 5 5 C 1.40425 * 121.28414 * 179.71182 * 4 3 2 6 6 C 1.36132 * 119.64137 * 179.97438 * 5 4 3 7 7 C 1.39434 * 120.92966 * 0.04064 * 6 5 4 8 8 C 1.36000 * 121.08448 * 359.95128 * 7 6 5 9 9 C 1.40834 * 119.73197 * 0.02616 * 8 7 6 10 10 N 1.33233 * 120.98278 * 179.97438 * 9 8 7 11 11 C 1.31909 * 121.29932 * 180.02562 * 10 9 8 12 12 C 1.48268 * 119.24031 * 179.97438 * 11 10 9 13 13 O 1.21498 * 120.00017 * 174.64163 * 12 11 10 14 14 N 1.34780 * 120.00345 * 354.36695 * 12 11 10 15 15 C 1.46495 * 120.00265 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47075 * 185.04856 * 15 14 12 17 17 H 1.08998 * 109.87581 * 304.42876 * 16 15 14 18 18 C 1.54329 * 109.88108 * 65.44977 * 16 15 14 19 19 C 1.55161 * 102.93755 * 141.60917 * 18 16 15 20 20 C 1.54906 * 101.58278 * 324.49515 * 19 18 16 21 21 N 1.47023 * 109.88149 * 183.25502 * 16 15 14 22 22 C 1.36943 * 125.64920 * 61.62029 * 21 16 15 23 23 H 1.08001 * 119.99557 * 14.67999 * 22 21 16 24 24 C 1.38804 * 120.00049 * 194.68041 * 22 21 16 25 25 N 1.31620 * 120.00296 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99927 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47285 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47454 * 119.99971 * 26 24 22 29 29 H 1.48508 * 109.47085 * 240.00037 * 26 24 22 30 30 H 1.08999 * 109.46629 * 263.40556 * 1 2 3 31 31 H 1.08998 * 109.46536 * 23.39663 * 1 2 3 32 32 H 1.08993 * 109.47291 * 143.39770 * 1 2 3 33 33 H 1.07993 * 120.88778 * 359.97052 * 3 2 1 34 34 H 1.07993 * 120.17735 * 359.97171 * 5 4 3 35 35 H 1.08005 * 119.53180 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.46446 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.13309 * 180.02562 * 8 7 6 38 38 H 0.97006 * 119.99935 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.47083 * 305.04731 * 15 14 12 40 40 H 1.08993 * 109.47236 * 65.04590 * 15 14 12 41 41 H 1.08994 * 110.71866 * 259.96901 * 18 16 15 42 42 H 1.09003 * 110.72068 * 23.24702 * 18 16 15 43 43 H 1.09000 * 111.00549 * 82.57543 * 19 18 16 44 44 H 1.09001 * 111.00122 * 206.41781 * 19 18 16 45 45 H 1.08998 * 110.36006 * 155.85300 * 20 19 18 46 46 H 1.08998 * 110.36772 * 278.05935 * 20 19 18 47 47 H 0.97001 * 120.00077 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5981 1.1360 -0.0062 5 6 4.3657 2.3119 -0.0126 6 6 5.7244 2.2290 -0.0179 7 6 6.3669 0.9914 -0.0180 8 6 5.6568 -0.1684 -0.0117 9 6 4.2491 -0.1255 -0.0056 10 7 3.5288 -1.2463 0.0001 11 6 2.2101 -1.2134 0.0053 12 6 1.4538 -2.4886 0.0110 13 8 0.2432 -2.4766 0.1141 14 7 2.1086 -3.6611 -0.1038 15 6 1.3613 -4.9211 -0.0988 16 6 2.3417 -6.0956 -0.1149 17 1 3.0136 -6.0058 -0.9685 18 6 3.1573 -6.1165 1.1951 19 6 3.2711 -7.6317 1.5093 20 6 1.8978 -8.1549 1.0196 21 7 1.6015 -7.3638 -0.1885 22 6 0.7735 -7.7465 -1.2100 23 1 0.7989 -7.2190 -2.1521 24 6 -0.0982 -8.8123 -1.0344 25 7 -0.1295 -9.4548 0.1139 26 14 -1.2271 -9.3348 -2.4280 27 1 -0.9999 -8.4577 -3.6045 28 1 -0.9382 -10.7438 -2.7973 29 1 -2.6412 -9.2179 -1.9898 30 1 -0.3632 -0.1180 1.0209 31 1 -0.3632 0.9432 -0.4081 32 1 -0.3633 -0.8249 -0.6127 33 1 1.6676 2.1257 -0.0005 34 1 3.8806 3.2768 -0.0133 35 1 6.3130 3.1345 -0.0224 36 1 7.4462 0.9532 -0.0227 37 1 6.1702 -1.1185 -0.0114 38 1 3.0747 -3.6705 -0.1905 39 1 0.7451 -4.9744 0.7987 40 1 0.7230 -4.9684 -0.9810 41 1 4.1438 -5.6792 1.0421 42 1 2.6229 -5.5967 1.9904 43 1 4.0860 -8.0872 0.9468 44 1 3.3947 -7.8006 2.5790 45 1 1.9618 -9.2147 0.7729 46 1 1.1352 -7.9887 1.7804 47 1 -0.7384 -10.1998 0.2364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028035867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = 43.765119 kcal Electronic energy + Delta-G solvation = -28639.340583 eV Core-core repulsion = 24787.470610 eV Total energy + Delta-G solvation = -3851.869973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30991 -39.45054 -37.76456 -37.04405 -34.81718 -33.88852 -32.46162 -31.86126 -30.76892 -29.58959 -28.63347 -27.20645 -25.71335 -24.67803 -23.60878 -22.74724 -22.35329 -20.80778 -20.14053 -19.61119 -18.34050 -18.05858 -17.01779 -16.60455 -15.76010 -15.56825 -15.45105 -14.95243 -14.66432 -14.62085 -14.37428 -14.17979 -13.85323 -13.65653 -13.26755 -13.25894 -13.17019 -12.87155 -12.31135 -12.04347 -11.96151 -11.89266 -11.85717 -11.82558 -11.63654 -11.29057 -10.92096 -10.79599 -10.63501 -10.21405 -10.12941 -10.05705 -9.90960 -9.80399 -9.69755 -9.38424 -9.01045 -8.62522 -8.53977 -8.52444 -6.82606 -5.75836 -3.12391 -0.05941 0.41681 1.65498 2.28109 3.18837 3.25875 3.40711 3.46993 3.48832 3.86984 3.91710 4.24094 4.43414 4.45942 4.50028 4.64632 4.78726 4.85194 4.99770 5.06509 5.35339 5.39803 5.43394 5.45387 5.54187 5.63766 5.65400 5.69978 5.73477 5.84477 5.84612 6.03394 6.07235 6.08944 6.13042 6.15653 6.29225 6.32748 6.48695 6.51068 6.57642 6.66806 6.73782 6.83156 7.07898 7.41636 7.53444 7.62993 7.80706 7.83106 8.26396 8.41064 9.18591 9.79088 10.46691 11.36240 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.002569 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.544441 B =10894.936328 C =11915.252145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.074 4.074 4 C -0.083 4.083 5 C -0.103 4.103 6 C -0.109 4.109 7 C -0.110 4.110 8 C -0.081 4.081 9 C 0.117 3.883 10 N -0.440 5.440 11 C 0.122 3.878 12 C 0.559 3.441 13 O -0.526 6.526 14 N -0.698 5.698 15 C 0.107 3.893 16 C 0.152 3.848 17 H 0.038 0.962 18 C -0.126 4.126 19 C -0.148 4.148 20 C 0.172 3.828 21 N -0.588 5.588 22 C -0.233 4.233 23 H 0.076 0.924 24 C -0.002 4.002 25 N -0.915 5.915 26 Si 0.910 3.090 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.289 1.289 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.406 0.594 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.026 0.974 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.997 23.712 1.661 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.087 4.087 3 C -0.100 4.100 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.130 4.130 8 C -0.100 4.100 9 C -0.007 4.007 10 N -0.151 5.151 11 C -0.032 4.032 12 C 0.342 3.658 13 O -0.403 6.403 14 N -0.348 5.348 15 C -0.018 4.018 16 C 0.044 3.956 17 H 0.056 0.944 18 C -0.164 4.164 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.313 5.313 22 C -0.361 4.361 23 H 0.094 0.906 24 C -0.199 4.199 25 N -0.561 5.561 26 Si 0.740 3.260 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.216 1.216 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.241 0.759 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.044 0.956 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.460 22.666 1.690 25.455 hybrid contribution -0.561 0.617 -0.670 1.070 sum 10.900 23.283 1.020 25.729 Atomic orbital electron populations 1.21101 0.88673 1.03397 1.04232 1.20593 0.98714 0.92057 0.97287 1.21350 0.92384 0.98462 0.97767 1.18968 0.94234 0.94559 1.00779 1.20981 0.94100 0.97062 1.00069 1.20985 0.94645 0.98090 0.98968 1.20917 1.00514 0.92014 0.99512 1.20907 0.91050 0.99561 0.98470 1.18852 0.94203 0.87714 0.99890 1.67843 1.06557 1.30591 1.10077 1.21414 0.89495 0.94222 0.98062 1.17896 0.86766 0.83016 0.78088 1.90744 1.12981 1.86461 1.50127 1.46050 1.11659 1.05850 1.71284 1.22343 0.95901 0.80859 1.02706 1.21127 0.92257 0.86708 0.95550 0.94403 1.22606 0.98827 0.97483 0.97484 1.23008 1.00852 0.95238 0.99618 1.21447 0.89496 0.96602 0.87690 1.44495 1.53082 1.12287 1.21401 1.19034 1.12473 1.13268 0.91320 0.90589 1.24917 0.98596 0.99362 0.97028 1.69951 1.39746 1.23392 1.23029 0.86076 0.80683 0.78055 0.81140 1.20365 1.21728 1.21612 0.90327 0.92362 0.87888 0.83845 0.85154 0.85459 0.85137 0.84339 0.75903 0.91291 0.91174 0.92283 0.91859 0.92304 0.92363 0.90993 0.95583 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.68 36.01 0.31 -1.06 16 2 C -0.08 -1.04 5.89 -104.48 -0.62 -1.65 16 3 C -0.07 -0.74 9.50 -39.26 -0.37 -1.11 16 4 C -0.08 -0.87 5.75 -106.71 -0.61 -1.48 16 5 C -0.10 -0.79 9.77 -39.52 -0.39 -1.17 16 6 C -0.11 -0.72 9.95 -39.89 -0.40 -1.12 16 7 C -0.11 -0.79 9.94 -39.94 -0.40 -1.18 16 8 C -0.08 -0.77 9.99 -39.40 -0.39 -1.16 16 9 C 0.12 1.40 6.61 -84.86 -0.56 0.83 16 10 N -0.44 -6.01 9.48 -7.55 -0.07 -6.08 16 11 C 0.12 1.76 6.75 -82.96 -0.56 1.20 16 12 C 0.56 9.38 7.75 -12.13 -0.09 9.28 16 13 O -0.53 -10.01 13.21 5.37 0.07 -9.94 16 14 N -0.70 -11.50 5.33 -61.12 -0.33 -11.82 16 15 C 0.11 2.10 5.08 -4.04 -0.02 2.08 16 16 C 0.15 3.06 3.21 -66.95 -0.21 2.85 16 17 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 18 C -0.13 -2.18 6.14 -24.89 -0.15 -2.33 16 19 C -0.15 -2.77 7.08 -24.58 -0.17 -2.94 16 20 C 0.17 4.14 5.41 -2.53 -0.01 4.13 16 21 N -0.59 -14.69 3.13 -162.58 -0.51 -15.20 16 22 C -0.23 -6.38 9.74 -15.06 -0.15 -6.53 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 25 N -0.92 -26.70 10.58 55.49 0.59 -26.12 16 26 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 32 H 0.10 1.45 5.80 -51.93 -0.30 1.15 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.41 5.97 7.68 -40.82 -0.31 5.66 16 39 H 0.07 1.49 8.06 -51.93 -0.42 1.07 16 40 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.09 7.80 -51.93 -0.40 0.69 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 46 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -31.85 382.70 -11.22 -43.07 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.82 Total: 4.70 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -4.90 Total: -1.52 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.32 Total: -59.22 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.85 -11.22 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028035867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.831 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds