Wall clock time and date at job start Tue Mar 31 2020 22:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.36538 * 120.08751 * 2 1 4 4 C 1.40726 * 118.23720 * 180.28528 * 3 2 1 5 5 C 1.40425 * 121.28414 * 179.71182 * 4 3 2 6 6 C 1.36132 * 119.64137 * 179.97438 * 5 4 3 7 7 C 1.39434 * 120.92966 * 0.04064 * 6 5 4 8 8 C 1.36000 * 121.08448 * 359.95128 * 7 6 5 9 9 C 1.40834 * 119.73197 * 0.02616 * 8 7 6 10 10 N 1.33233 * 120.98278 * 179.97438 * 9 8 7 11 11 C 1.31909 * 121.29932 * 180.02562 * 10 9 8 12 12 C 1.48268 * 119.24031 * 179.97438 * 11 10 9 13 13 O 1.21498 * 120.00017 * 174.64163 * 12 11 10 14 14 N 1.34780 * 120.00345 * 354.36695 * 12 11 10 15 15 C 1.46495 * 120.00265 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47075 * 185.04856 * 15 14 12 17 17 H 1.08998 * 109.87581 * 304.42876 * 16 15 14 18 18 C 1.54329 * 109.88108 * 65.44977 * 16 15 14 19 19 C 1.55161 * 102.93755 * 141.60917 * 18 16 15 20 20 C 1.54906 * 101.58278 * 324.49515 * 19 18 16 21 21 N 1.47023 * 109.88149 * 183.25502 * 16 15 14 22 22 C 1.36943 * 125.64920 * 61.62029 * 21 16 15 23 23 H 1.08001 * 119.99557 * 14.67999 * 22 21 16 24 24 C 1.38804 * 120.00049 * 194.68041 * 22 21 16 25 25 N 1.31620 * 120.00296 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99927 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47285 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47454 * 119.99971 * 26 24 22 29 29 H 1.48508 * 109.47085 * 240.00037 * 26 24 22 30 30 H 1.08999 * 109.46629 * 263.40556 * 1 2 3 31 31 H 1.08998 * 109.46536 * 23.39663 * 1 2 3 32 32 H 1.08993 * 109.47291 * 143.39770 * 1 2 3 33 33 H 1.07993 * 120.88778 * 359.97052 * 3 2 1 34 34 H 1.07993 * 120.17735 * 359.97171 * 5 4 3 35 35 H 1.08005 * 119.53180 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.46446 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.13309 * 180.02562 * 8 7 6 38 38 H 0.97006 * 119.99935 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.47083 * 305.04731 * 15 14 12 40 40 H 1.08993 * 109.47236 * 65.04590 * 15 14 12 41 41 H 1.08994 * 110.71866 * 259.96901 * 18 16 15 42 42 H 1.09003 * 110.72068 * 23.24702 * 18 16 15 43 43 H 1.09000 * 111.00549 * 82.57543 * 19 18 16 44 44 H 1.09001 * 111.00122 * 206.41781 * 19 18 16 45 45 H 1.08998 * 110.36006 * 155.85300 * 20 19 18 46 46 H 1.08998 * 110.36772 * 278.05935 * 20 19 18 47 47 H 0.97001 * 120.00077 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5981 1.1360 -0.0062 5 6 4.3657 2.3119 -0.0126 6 6 5.7244 2.2290 -0.0179 7 6 6.3669 0.9914 -0.0180 8 6 5.6568 -0.1684 -0.0117 9 6 4.2491 -0.1255 -0.0056 10 7 3.5288 -1.2463 0.0001 11 6 2.2101 -1.2134 0.0053 12 6 1.4538 -2.4886 0.0110 13 8 0.2432 -2.4766 0.1141 14 7 2.1086 -3.6611 -0.1038 15 6 1.3613 -4.9211 -0.0988 16 6 2.3417 -6.0956 -0.1149 17 1 3.0136 -6.0058 -0.9685 18 6 3.1573 -6.1165 1.1951 19 6 3.2711 -7.6317 1.5093 20 6 1.8978 -8.1549 1.0196 21 7 1.6015 -7.3638 -0.1885 22 6 0.7735 -7.7465 -1.2100 23 1 0.7989 -7.2190 -2.1521 24 6 -0.0982 -8.8123 -1.0344 25 7 -0.1295 -9.4548 0.1139 26 14 -1.2271 -9.3348 -2.4280 27 1 -0.9999 -8.4577 -3.6045 28 1 -0.9382 -10.7438 -2.7973 29 1 -2.6412 -9.2179 -1.9898 30 1 -0.3632 -0.1180 1.0209 31 1 -0.3632 0.9432 -0.4081 32 1 -0.3633 -0.8249 -0.6127 33 1 1.6676 2.1257 -0.0005 34 1 3.8806 3.2768 -0.0133 35 1 6.3130 3.1345 -0.0224 36 1 7.4462 0.9532 -0.0227 37 1 6.1702 -1.1185 -0.0114 38 1 3.0747 -3.6705 -0.1905 39 1 0.7451 -4.9744 0.7987 40 1 0.7230 -4.9684 -0.9810 41 1 4.1438 -5.6792 1.0421 42 1 2.6229 -5.5967 1.9904 43 1 4.0860 -8.0872 0.9468 44 1 3.3947 -7.8006 2.5790 45 1 1.9618 -9.2147 0.7729 46 1 1.1352 -7.9887 1.7804 47 1 -0.7384 -10.1998 0.2364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028035867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:23 Heat of formation + Delta-G solvation = 24.449169 kcal Electronic energy + Delta-G solvation = -28640.178186 eV Core-core repulsion = 24787.470610 eV Total energy + Delta-G solvation = -3852.707576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.18037 -40.67746 -39.35495 -37.93846 -36.09713 -35.00633 -34.38690 -32.63016 -31.74136 -31.28419 -30.20479 -28.04694 -26.97978 -26.42953 -25.11383 -23.54064 -23.00883 -22.19227 -21.78923 -21.24745 -19.52156 -18.95037 -18.56653 -17.68017 -17.29910 -16.75821 -16.64247 -16.42439 -15.91553 -15.70333 -15.46604 -15.38610 -15.25769 -14.71244 -14.60182 -14.21259 -14.03306 -13.95767 -13.89273 -13.68362 -13.47793 -13.15807 -13.02512 -12.85489 -12.70726 -12.60384 -12.58143 -12.47010 -11.98958 -11.87989 -11.76045 -11.51674 -11.43772 -11.38414 -11.12819 -10.70332 -10.51921 -10.17765 -9.69204 -9.19971 -8.87953 -7.89745 -5.27715 -0.85677 -0.34896 0.92637 1.38007 1.43234 1.45250 1.54882 1.97651 2.18958 2.47937 2.94740 3.07035 3.29810 3.52786 3.63598 3.70654 3.73838 3.86349 3.95047 3.95368 4.11432 4.21862 4.23827 4.37345 4.42017 4.42562 4.50622 4.61589 4.69417 4.76335 4.80956 4.91584 4.94824 4.96338 5.06238 5.10137 5.11161 5.16458 5.26009 5.36708 5.40035 5.44845 5.49541 5.52275 5.59042 5.64594 5.76327 5.88136 6.21198 6.35324 6.68166 7.07343 7.10321 7.73926 8.40447 9.21478 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.002569 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.544441 B =10894.936328 C =11915.252145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.057 4.057 4 C -0.095 4.095 5 C -0.105 4.105 6 C -0.101 4.101 7 C -0.095 4.095 8 C -0.105 4.105 9 C 0.092 3.908 10 N -0.453 5.453 11 C 0.095 3.905 12 C 0.556 3.444 13 O -0.557 6.557 14 N -0.691 5.691 15 C 0.129 3.871 16 C 0.149 3.851 17 H 0.049 0.951 18 C -0.113 4.113 19 C -0.132 4.132 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.240 4.240 23 H 0.076 0.924 24 C -0.059 4.059 25 N -0.945 5.945 26 Si 0.973 3.027 27 H -0.267 1.267 28 H -0.288 1.288 29 H -0.294 1.294 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.416 0.584 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.038 0.962 46 H -0.007 1.007 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.067 27.707 1.372 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.083 4.083 4 C -0.097 4.097 5 C -0.123 4.123 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.124 4.124 9 C -0.033 4.033 10 N -0.164 5.164 11 C -0.057 4.057 12 C 0.342 3.658 13 O -0.436 6.436 14 N -0.342 5.342 15 C 0.003 3.997 16 C 0.042 3.958 17 H 0.066 0.934 18 C -0.151 4.151 19 C -0.171 4.171 20 C 0.050 3.950 21 N -0.334 5.334 22 C -0.369 4.369 23 H 0.094 0.906 24 C -0.253 4.253 25 N -0.593 5.593 26 Si 0.801 3.199 27 H -0.192 1.192 28 H -0.214 1.214 29 H -0.221 1.221 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.198 0.802 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.159 0.841 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.056 0.944 46 H 0.011 0.989 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.568 26.693 1.393 30.442 hybrid contribution -1.315 -0.410 -0.587 1.497 sum 13.253 26.283 0.806 29.447 Atomic orbital electron populations 1.20963 0.88736 1.03686 1.03258 1.20654 0.98820 0.92316 0.99111 1.21731 0.92475 0.98811 0.95268 1.19291 0.94695 0.95105 1.00584 1.21364 0.94589 0.97193 0.99180 1.21482 0.94662 0.99161 0.96561 1.21358 1.02045 0.91432 0.96664 1.21091 0.90214 1.00945 1.00155 1.19310 0.95255 0.87975 1.00725 1.67714 1.06175 1.32115 1.10445 1.21011 0.90053 0.93322 1.01336 1.18386 0.86648 0.83884 0.76892 1.90728 1.14467 1.87118 1.51278 1.45799 1.11871 1.04815 1.71708 1.21790 0.95384 0.82563 0.99998 1.21294 0.92022 0.84753 0.97763 0.93377 1.22575 1.00198 0.96794 0.95513 1.22876 0.97403 0.95622 1.01166 1.21261 0.91949 0.95051 0.86783 1.44745 1.53045 1.14559 1.21018 1.19331 1.12541 1.12864 0.92135 0.90608 1.25696 1.00343 0.99895 0.99383 1.70147 1.40486 1.23860 1.24804 0.85098 0.78280 0.77689 0.78819 1.19188 1.21444 1.22109 0.91193 0.89267 0.91071 0.80192 0.82037 0.81864 0.82153 0.84083 0.74666 0.93878 0.94152 0.88301 0.91897 0.91029 0.89846 0.94373 0.98892 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 8.68 71.24 0.62 -1.99 16 2 C -0.11 -2.61 5.89 -19.77 -0.12 -2.73 16 3 C -0.06 -1.01 9.50 22.48 0.21 -0.80 16 4 C -0.09 -1.71 5.75 -21.22 -0.12 -1.84 16 5 C -0.10 -1.11 9.77 22.31 0.22 -0.90 16 6 C -0.10 -0.81 9.95 22.07 0.22 -0.59 16 7 C -0.10 -0.97 9.94 22.04 0.22 -0.75 16 8 C -0.11 -1.76 9.99 22.38 0.22 -1.54 16 9 C 0.09 2.06 6.61 40.49 0.27 2.32 16 10 N -0.45 -12.37 9.48 -177.79 -1.69 -14.06 16 11 C 0.10 2.82 6.75 42.29 0.29 3.11 16 12 C 0.56 19.74 7.75 86.91 0.67 20.41 16 13 O -0.56 -22.81 13.21 -3.71 -0.05 -22.86 16 14 N -0.69 -23.65 5.33 -465.58 -2.48 -26.13 16 15 C 0.13 5.33 5.08 86.38 0.44 5.77 16 16 C 0.15 6.09 3.21 45.34 0.15 6.23 16 17 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 18 C -0.11 -3.76 6.14 31.79 0.20 -3.57 16 19 C -0.13 -4.79 7.08 31.99 0.23 -4.57 16 20 C 0.17 8.71 5.41 86.86 0.47 9.18 16 21 N -0.61 -31.51 3.13 -668.27 -2.09 -33.60 16 22 C -0.24 -13.64 9.74 84.03 0.82 -12.82 16 23 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.06 -3.45 5.47 84.86 0.46 -2.99 16 25 N -0.95 -57.80 10.58 21.65 0.23 -57.57 16 26 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 29 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 1.47 8.04 -2.39 -0.02 1.45 16 32 H 0.07 2.16 5.80 -2.39 -0.01 2.14 16 33 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.16 0.21 8.06 -2.91 -0.02 0.18 16 36 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 37 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.42 12.35 7.68 -92.70 -0.71 11.64 16 39 H 0.04 1.99 8.06 -2.39 -0.02 1.97 16 40 H 0.04 1.89 7.90 -2.39 -0.02 1.87 16 41 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.06 2.12 7.80 -2.39 -0.02 2.10 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 45 H 0.04 2.13 6.93 -2.39 -0.02 2.11 16 46 H -0.01 -0.39 8.06 -2.39 -0.02 -0.41 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -75.60 382.70 1.69 -73.91 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.28 Total: 19.22 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.46 Total: 11.95 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -6.03 Total: -131.36 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -75.60 1.69 -73.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028035867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.363 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds