Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36355 * 119.95503 * 2 1 4 4 C 1.38866 * 121.05819 * 179.70195 * 3 2 1 5 5 C 1.38739 * 120.72270 * 0.60356 * 4 3 2 6 6 C 1.47437 * 120.33219 * 179.70084 * 5 4 3 7 7 O 1.21596 * 120.00300 * 179.72523 * 6 5 4 8 8 N 1.34774 * 119.99843 * 359.72232 * 6 5 4 9 9 C 1.46497 * 120.00008 * 180.28007 * 8 6 5 10 10 C 1.53003 * 109.47276 * 186.11476 * 9 8 6 11 11 H 1.08998 * 109.87175 * 300.88001 * 10 9 8 12 12 C 1.54319 * 109.88462 * 179.86198 * 10 9 8 13 13 C 1.55152 * 102.94641 * 218.38721 * 12 10 9 14 14 C 1.54912 * 101.57915 * 35.50365 * 13 12 10 15 15 N 1.47022 * 109.88204 * 62.05192 * 10 9 8 16 16 C 1.36935 * 125.65267 * 298.34216 * 15 10 9 17 17 H 1.08005 * 119.99460 * 335.89241 * 16 15 10 18 18 C 1.38804 * 120.00208 * 155.89979 * 16 15 10 19 19 N 1.31617 * 120.00252 * 159.38428 * 18 16 15 20 20 Si 1.86806 * 120.00113 * 339.37750 * 18 16 15 21 21 H 1.48501 * 109.46923 * 84.75786 * 20 18 16 22 22 H 1.48503 * 109.47075 * 204.75578 * 20 18 16 23 23 H 1.48502 * 109.46858 * 324.75561 * 20 18 16 24 24 C 1.41781 * 119.33761 * 359.42514 * 5 4 3 25 25 N 1.33349 * 121.05239 * 180.30152 * 24 5 4 26 26 C 1.31226 * 121.35318 * 179.97438 * 25 24 5 27 27 C 1.39232 * 121.69640 * 0.02562 * 26 25 24 28 28 C 1.36629 * 119.90737 * 359.97438 * 27 26 25 29 29 C 1.40440 * 119.96199 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47287 * 269.97630 * 1 2 3 31 31 H 1.08993 * 109.47443 * 29.98218 * 1 2 3 32 32 H 1.08999 * 109.46871 * 149.98107 * 1 2 3 33 33 H 1.08000 * 119.46905 * 0.02562 * 3 2 1 34 34 H 1.07994 * 119.63512 * 180.30614 * 4 3 2 35 35 H 0.97008 * 120.00064 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46905 * 306.11162 * 9 8 6 37 37 H 1.08994 * 109.47440 * 66.11056 * 9 8 6 38 38 H 1.09003 * 110.72237 * 336.75688 * 12 10 9 39 39 H 1.09008 * 110.72083 * 100.02361 * 12 10 9 40 40 H 1.08999 * 111.00893 * 153.57133 * 13 12 10 41 41 H 1.09001 * 111.00961 * 277.42937 * 13 12 10 42 42 H 1.09001 * 110.36905 * 81.82541 * 14 13 12 43 43 H 1.08997 * 110.36856 * 204.04383 * 14 13 12 44 44 H 0.97001 * 120.00477 * 179.97438 * 19 18 16 45 45 H 1.08004 * 119.15235 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.04777 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.92353 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1814 0.0000 4 6 3.5762 1.2081 0.0062 5 6 4.3079 0.0294 0.0000 6 6 5.7818 0.0679 0.0000 7 8 6.4171 -0.9689 -0.0004 8 7 6.4249 1.2522 0.0004 9 6 7.8894 1.2905 -0.0058 10 6 8.3624 2.7373 0.1497 11 1 7.9705 3.3449 -0.6659 12 6 9.9048 2.7882 0.1478 13 6 10.2179 3.8755 1.2094 14 6 9.0922 3.6319 2.2454 15 7 7.9094 3.2754 1.4407 16 6 6.6051 3.4217 1.8310 17 1 5.8261 3.5122 1.0882 18 6 6.2839 3.4539 3.1810 19 7 5.1459 3.9852 3.5743 20 14 7.4670 2.7428 4.4397 21 1 8.4826 3.7654 4.7974 22 1 6.7148 2.3452 5.6568 23 1 8.1441 1.5524 3.8653 24 6 3.6241 -1.2127 -0.0004 25 7 4.2932 -2.3662 -0.0003 26 6 3.6663 -3.5190 -0.0001 27 6 2.2761 -3.5959 -0.0007 28 6 1.5306 -2.4509 -0.0008 29 6 2.2084 -1.2167 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6385 2.1112 0.0004 34 1 4.0920 2.1569 0.0111 35 1 5.9181 2.0794 0.0010 36 1 8.2719 0.6924 0.8212 37 1 8.2594 0.8865 -0.9481 38 1 10.3228 1.8266 0.4457 39 1 10.2797 3.0861 -0.8315 40 1 11.1998 3.7156 1.6547 41 1 10.1437 4.8744 0.7794 42 1 9.3599 2.8109 2.9106 43 1 8.9028 4.5385 2.8201 44 1 4.9213 4.0074 4.5177 45 1 4.2437 -4.4318 0.0004 46 1 1.7878 -4.5591 -0.0010 47 1 0.4513 -2.4914 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028036097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = 29.229682 kcal Electronic energy + Delta-G solvation = -29712.238428 eV Core-core repulsion = 25859.738151 eV Total energy + Delta-G solvation = -3852.500277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.04642 -40.51495 -39.34341 -38.19124 -35.45513 -35.06112 -34.63255 -32.24955 -31.80115 -31.57109 -30.83824 -28.43274 -26.56959 -25.58678 -25.24271 -24.46946 -23.24498 -22.30306 -21.37902 -20.70332 -19.27231 -19.09030 -18.36672 -18.03842 -17.33374 -17.03526 -16.76011 -16.43036 -16.08839 -15.51416 -15.33803 -15.20864 -15.08006 -14.91105 -14.80947 -14.33339 -14.16101 -14.12504 -14.02653 -13.93141 -13.42139 -13.08335 -13.04478 -12.81811 -12.75918 -12.74648 -12.37900 -12.31841 -12.18598 -12.05021 -11.79591 -11.62908 -11.35105 -11.34370 -11.00741 -10.78414 -10.10756 -9.91824 -9.81654 -9.13314 -9.00364 -8.18714 -5.44320 -0.83457 -0.17129 0.76472 1.21373 1.32769 1.39492 1.74056 2.22078 2.35388 2.40761 3.10313 3.15000 3.27679 3.34046 3.55140 3.70924 3.83583 3.85281 3.93458 3.94475 4.00317 4.09089 4.14547 4.28691 4.42311 4.42834 4.44306 4.53853 4.64530 4.72068 4.76498 4.80587 4.83218 4.90091 4.99549 5.00204 5.01979 5.09663 5.14146 5.18223 5.20256 5.26756 5.42985 5.46835 5.56497 5.61851 5.72413 5.85545 6.09835 6.66828 6.76578 7.08298 7.36901 7.55055 8.14928 8.99805 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.003764 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.896925 B = 7436.706473 C = 8259.075906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.141 4.141 4 C -0.043 4.043 5 C -0.159 4.159 6 C 0.543 3.457 7 O -0.561 6.561 8 N -0.704 5.704 9 C 0.120 3.880 10 C 0.142 3.858 11 H 0.064 0.936 12 C -0.114 4.114 13 C -0.115 4.115 14 C 0.101 3.899 15 N -0.619 5.619 16 C -0.209 4.209 17 H 0.079 0.921 18 C -0.019 4.019 19 N -0.941 5.941 20 Si 0.922 3.078 21 H -0.270 1.270 22 H -0.317 1.317 23 H -0.292 1.292 24 C 0.138 3.862 25 N -0.498 5.498 26 C 0.118 3.882 27 C -0.172 4.172 28 C -0.051 4.051 29 C -0.130 4.130 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.406 0.594 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.006 0.994 43 H 0.041 0.959 44 H 0.258 0.742 45 H 0.176 0.824 46 H 0.182 0.818 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -8.430 -11.127 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.159 4.159 4 C -0.063 4.063 5 C -0.163 4.163 6 C 0.331 3.669 7 O -0.441 6.441 8 N -0.357 5.357 9 C -0.006 4.006 10 C 0.036 3.964 11 H 0.082 0.918 12 C -0.152 4.152 13 C -0.153 4.153 14 C -0.024 4.024 15 N -0.344 5.344 16 C -0.338 4.338 17 H 0.096 0.904 18 C -0.215 4.215 19 N -0.588 5.588 20 Si 0.754 3.246 21 H -0.196 1.196 22 H -0.246 1.246 23 H -0.219 1.219 24 C 0.016 3.984 25 N -0.206 5.206 26 C -0.054 4.054 27 C -0.192 4.192 28 C -0.076 4.076 29 C -0.132 4.132 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.177 0.823 34 H 0.149 0.851 35 H 0.245 0.755 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.024 0.976 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.193 0.807 46 H 0.199 0.801 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.488 -8.935 -10.982 15.574 hybrid contribution -0.237 -0.016 1.506 1.525 sum -6.725 -8.951 -9.476 14.668 Atomic orbital electron populations 1.21044 0.86821 1.05297 1.04229 1.20381 0.98555 0.90761 0.93106 1.21046 0.92779 0.99875 1.02177 1.21635 0.95740 0.96683 0.92284 1.19941 0.92845 0.93560 1.09929 1.18382 0.87881 0.83779 0.76840 1.90713 1.68582 1.33653 1.51169 1.46026 1.08049 1.08169 1.73447 1.21883 0.79653 0.99191 0.99846 1.21582 0.95616 0.90419 0.88833 0.91843 1.22564 0.92072 0.99525 1.01081 1.22676 0.97329 0.99773 0.95571 1.22037 0.88615 0.96640 0.95113 1.45101 1.01402 1.72288 1.15628 1.18450 0.82996 1.41265 0.91113 0.90386 1.25445 0.96847 1.00905 0.98317 1.69862 1.25574 1.47765 1.15606 0.86291 0.79321 0.79567 0.79407 1.19586 1.24640 1.21924 1.18826 0.90670 0.91503 0.97424 1.68248 1.41027 0.98642 1.12699 1.23726 0.93975 0.95824 0.91836 1.22326 0.94230 1.01433 1.01184 1.21980 1.02335 0.89805 0.93506 1.18996 0.92533 0.96640 1.05003 0.89182 0.89041 0.88797 0.82256 0.85111 0.75484 0.95175 0.90973 0.91070 0.87337 0.88889 0.89739 0.97631 0.94103 0.93261 0.80654 0.80104 0.79900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.53 71.24 0.68 -0.88 16 2 C -0.03 -0.65 5.89 -19.77 -0.12 -0.76 16 3 C -0.14 -3.91 9.57 21.98 0.21 -3.70 16 4 C -0.04 -1.52 9.52 22.54 0.21 -1.30 16 5 C -0.16 -6.57 5.91 -19.86 -0.12 -6.69 16 6 C 0.54 25.24 7.76 86.67 0.67 25.91 16 7 O -0.56 -29.22 15.17 -4.02 -0.06 -29.28 16 8 N -0.70 -30.17 4.75 -466.38 -2.21 -32.39 16 9 C 0.12 4.79 5.18 86.38 0.45 5.24 16 10 C 0.14 5.15 3.34 45.34 0.15 5.30 16 11 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 12 C -0.11 -3.17 6.48 31.78 0.21 -2.97 16 13 C -0.12 -3.36 7.09 31.99 0.23 -3.14 16 14 C 0.10 4.20 4.74 86.86 0.41 4.61 16 15 N -0.62 -28.14 2.87 -668.25 -1.91 -30.05 16 16 C -0.21 -11.11 8.87 84.03 0.75 -10.37 16 17 H 0.08 4.22 6.56 -2.91 -0.02 4.20 16 18 C -0.02 -1.12 5.45 84.86 0.46 -0.66 16 19 N -0.94 -57.06 13.97 21.65 0.30 -56.75 16 20 Si 0.92 49.05 24.34 68.60 1.67 50.72 16 21 H -0.27 -13.42 6.69 99.48 0.67 -12.76 16 22 H -0.32 -17.38 7.11 99.48 0.71 -16.68 16 23 H -0.29 -16.13 6.76 99.48 0.67 -15.46 16 24 C 0.14 5.30 6.61 40.61 0.27 5.57 16 25 N -0.50 -19.53 8.44 -187.97 -1.59 -21.12 16 26 C 0.12 3.23 11.15 85.02 0.95 4.18 16 27 C -0.17 -3.23 10.03 22.13 0.22 -3.01 16 28 C -0.05 -0.99 9.36 22.52 0.21 -0.78 16 29 C -0.13 -3.68 5.74 -21.29 -0.12 -3.80 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.09 0.81 6.42 -2.39 -0.02 0.79 16 33 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.13 4.69 6.37 -2.91 -0.02 4.67 16 35 H 0.41 16.98 4.00 -92.70 -0.37 16.61 16 36 H 0.03 1.39 8.12 -2.39 -0.02 1.37 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.07 1.97 7.85 -2.39 -0.02 1.95 16 39 H 0.11 2.24 8.14 -2.38 -0.02 2.23 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.01 0.27 5.45 -2.39 -0.01 0.26 16 43 H 0.04 1.82 7.19 -2.39 -0.02 1.80 16 44 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 46 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.18 1.82 6.42 -2.91 -0.02 1.80 16 Total: -1.00 -83.38 370.05 2.47 -80.91 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.56 Total: 25.22 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 5.72 Total: 12.74 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -5.41 Total: -140.31 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.06 Total: -29.28 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.67 Total: 50.72 kcal Total: -83.38 2.47 -80.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028036097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.136 kcal (2) G-P(sol) polarization free energy of solvation -83.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds