Wall clock time and date at job start Tue Mar 31 2020 22:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39319 * 119.11630 * 2 1 4 4 C 1.36577 * 119.89875 * 180.02562 * 3 2 1 5 5 C 1.40888 * 118.16385 * 359.97438 * 4 3 2 6 6 C 1.40179 * 121.21818 * 180.30388 * 5 4 3 7 7 C 1.38543 * 119.40461 * 180.22374 * 6 5 4 8 8 C 1.47764 * 119.80731 * 179.77158 * 7 6 5 9 9 O 1.21568 * 119.99704 * 359.72387 * 8 7 6 10 10 N 1.34771 * 120.00256 * 179.72619 * 8 7 6 11 11 C 1.46507 * 120.00043 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47016 * 185.93627 * 11 10 8 13 13 H 1.09006 * 109.99687 * 295.55286 * 12 11 10 14 14 C 1.54324 * 109.88392 * 174.45734 * 12 11 10 15 15 C 1.55275 * 103.00539 * 218.46734 * 14 12 11 16 16 C 1.54909 * 101.52833 * 35.36134 * 15 14 12 17 17 N 1.47023 * 109.88179 * 56.64506 * 12 11 10 18 18 C 1.36932 * 125.64842 * 298.33500 * 17 12 11 19 19 H 1.07996 * 120.00616 * 332.00565 * 18 17 12 20 20 C 1.38813 * 119.99746 * 152.00563 * 18 17 12 21 21 N 1.31622 * 120.00178 * 162.94911 * 20 18 17 22 22 Si 1.86802 * 120.00047 * 342.94810 * 20 18 17 23 23 H 1.48496 * 109.47126 * 85.18948 * 22 20 18 24 24 H 1.48501 * 109.47374 * 205.19434 * 22 20 18 25 25 H 1.48504 * 109.46988 * 325.18941 * 22 20 18 26 26 C 1.40633 * 120.38662 * 359.49823 * 7 6 5 27 27 C 1.35694 * 120.92491 * 0.22939 * 26 7 6 28 28 C 1.40763 * 120.11420 * 0.02562 * 27 26 7 29 29 N 1.31121 * 119.11389 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46529 * 269.97933 * 1 2 3 31 31 H 1.08995 * 109.47296 * 29.97414 * 1 2 3 32 32 H 1.08989 * 109.47262 * 149.97888 * 1 2 3 33 33 H 1.08000 * 120.04378 * 0.04680 * 3 2 1 34 34 H 1.08007 * 120.91665 * 179.97438 * 4 3 2 35 35 H 1.08008 * 120.29479 * 359.97438 * 6 5 4 36 36 H 0.97005 * 120.00135 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47207 * 65.93885 * 11 10 8 38 38 H 1.08995 * 109.47024 * 305.93417 * 11 10 8 39 39 H 1.08997 * 110.71560 * 336.74865 * 14 12 11 40 40 H 1.08994 * 110.71951 * 100.02451 * 14 12 11 41 41 H 1.09001 * 110.96023 * 277.32949 * 15 14 12 42 42 H 1.09006 * 111.09821 * 153.44561 * 15 14 12 43 43 H 1.09001 * 110.36050 * 204.23346 * 16 15 14 44 44 H 1.08995 * 110.36839 * 82.01994 * 16 15 14 45 45 H 0.96999 * 119.99655 * 179.97438 * 21 20 18 46 46 H 1.08007 * 119.53404 * 180.25284 * 26 7 6 47 47 H 1.07996 * 119.94351 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2358 -0.0005 5 6 4.2324 0.0029 -0.0005 6 6 5.6331 -0.0527 0.0053 7 6 6.2649 -1.2856 0.0004 8 6 7.7410 -1.3545 0.0014 9 8 8.3972 -0.3312 0.0014 10 7 8.3597 -2.5518 0.0022 11 6 9.8232 -2.6201 0.0037 12 6 10.2659 -4.0771 -0.1448 13 1 9.9454 -4.6544 0.7226 14 6 11.8012 -4.1476 -0.2840 15 6 12.0056 -5.2731 -1.3341 16 6 10.7889 -5.0508 -2.2669 17 7 9.6897 -4.6525 -1.3689 18 6 8.3533 -4.7952 -1.6313 19 1 7.6529 -4.9140 -0.8178 20 6 7.8988 -4.7873 -2.9429 21 7 6.6997 -5.2500 -3.2267 22 14 8.9889 -4.1199 -4.3051 23 1 9.8988 -5.1926 -4.7812 24 1 8.1426 -3.6522 -5.4321 25 1 9.7920 -2.9843 -3.7848 26 6 5.5097 -2.4720 0.0003 27 6 4.1533 -2.4352 0.0003 28 6 3.4804 -1.1988 -0.0001 29 7 2.1449 -1.1455 -0.0005 30 1 -0.3632 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5141 33 1 1.6312 2.1444 0.0008 34 1 4.0928 2.1699 -0.0010 35 1 6.2145 0.8576 0.0095 36 1 7.8361 -3.3684 0.0025 37 1 10.2047 -2.2184 0.9424 38 1 10.2151 -2.0348 -0.8280 39 1 12.1988 -3.2020 -0.6524 40 1 12.2626 -4.4172 0.6660 41 1 11.9640 -6.2561 -0.8651 42 1 12.9423 -5.1394 -1.8752 43 1 10.5372 -5.9742 -2.7883 44 1 11.0002 -4.2569 -2.9832 45 1 6.3821 -5.2441 -4.1432 46 1 6.0166 -3.4257 0.0006 47 1 3.5891 -3.3560 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028213729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:50 Heat of formation + Delta-G solvation = 21.873701 kcal Electronic energy + Delta-G solvation = -29219.068379 eV Core-core repulsion = 25366.249123 eV Total energy + Delta-G solvation = -3852.819257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99046 -40.81254 -39.49562 -37.94385 -35.58737 -34.66826 -34.53203 -33.12491 -31.80339 -31.14884 -30.96018 -28.97034 -26.66407 -25.74738 -24.92002 -24.01657 -23.08521 -22.57748 -21.57936 -21.11317 -19.45284 -19.04736 -18.50171 -17.57004 -17.32572 -17.09326 -16.67965 -16.58816 -16.08892 -15.64622 -15.46819 -15.25667 -15.06873 -14.85347 -14.79047 -14.46980 -14.38649 -14.14190 -13.91163 -13.81282 -13.42107 -13.10278 -13.01890 -13.00383 -12.80688 -12.73032 -12.46074 -12.31307 -12.24091 -12.05454 -11.80282 -11.64023 -11.62256 -11.31391 -11.01761 -10.80333 -10.51795 -10.01571 -9.70478 -9.32208 -8.94121 -8.18842 -5.49684 -0.81516 -0.36047 0.85320 1.23641 1.34783 1.38783 1.40301 2.19885 2.34357 2.39726 3.03117 3.11652 3.15755 3.28653 3.52350 3.65331 3.69619 3.85028 3.87287 3.97059 3.99633 4.04075 4.15171 4.25840 4.32609 4.39129 4.45322 4.64913 4.67891 4.72949 4.79390 4.80621 4.82684 4.86246 4.94448 5.00302 5.02120 5.03306 5.15075 5.18916 5.22729 5.24700 5.28171 5.48409 5.49066 5.56594 5.73975 5.76593 6.09497 6.60215 6.76603 6.90601 7.20249 7.54238 8.16155 8.99156 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.003223 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.666350 B = 8685.039555 C = 9600.784970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.157 3.843 3 C -0.170 4.170 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.024 4.024 7 C -0.151 4.151 8 C 0.549 3.451 9 O -0.587 6.587 10 N -0.697 5.697 11 C 0.115 3.885 12 C 0.139 3.861 13 H 0.061 0.939 14 C -0.114 4.114 15 C -0.117 4.117 16 C 0.099 3.901 17 N -0.619 5.619 18 C -0.218 4.218 19 H 0.075 0.925 20 C -0.013 4.013 21 N -0.940 5.940 22 Si 0.928 3.072 23 H -0.274 1.274 24 H -0.319 1.319 25 H -0.281 1.281 26 C -0.065 4.065 27 C -0.110 4.110 28 C 0.134 3.866 29 N -0.513 5.513 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.411 0.589 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.038 0.962 44 H 0.010 0.990 45 H 0.258 0.742 46 H 0.129 0.871 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 10.836 9.669 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.005 3.995 3 C -0.189 4.189 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.044 4.044 7 C -0.154 4.154 8 C 0.337 3.663 9 O -0.471 6.471 10 N -0.349 5.349 11 C -0.011 4.011 12 C 0.033 3.967 13 H 0.079 0.921 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.025 4.025 17 N -0.345 5.345 18 C -0.347 4.347 19 H 0.092 0.908 20 C -0.210 4.210 21 N -0.586 5.586 22 Si 0.760 3.240 23 H -0.200 1.200 24 H -0.249 1.249 25 H -0.207 1.207 26 C -0.085 4.085 27 C -0.128 4.128 28 C 0.013 3.987 29 N -0.224 5.224 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.200 0.800 34 H 0.191 0.809 35 H 0.170 0.830 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.056 0.944 44 H 0.027 0.973 45 H 0.068 0.932 46 H 0.146 0.854 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.230 10.574 9.541 14.857 hybrid contribution 0.554 0.260 -1.463 1.586 sum -3.677 10.834 8.078 14.005 Atomic orbital electron populations 1.20928 0.85906 1.04799 1.04552 1.22374 0.99095 0.88185 0.89886 1.22159 0.94623 1.00256 1.01881 1.21937 0.95291 0.96984 0.92816 1.18976 0.93934 0.95450 1.05390 1.21528 0.92880 0.97506 0.92481 1.19975 0.92708 0.95016 1.07689 1.18467 0.87840 0.83745 0.76226 1.90656 1.67587 1.35197 1.53673 1.46213 1.08657 1.08478 1.71552 1.21985 0.79438 0.99108 1.00543 1.21604 0.94689 0.90244 0.90155 0.92083 1.22584 0.92362 0.99311 1.00914 1.22698 0.96631 0.99541 0.96622 1.22063 0.89808 0.96545 0.94116 1.45014 1.01271 1.70149 1.18040 1.18353 0.82001 1.42198 0.92110 0.90794 1.25561 0.96135 1.00240 0.99024 1.69855 1.19890 1.49458 1.19421 0.86205 0.78302 0.79477 0.80057 1.20015 1.24855 1.20722 1.20984 0.94171 0.97683 0.95699 1.20732 0.93634 0.97230 1.01250 1.19085 0.89823 0.93142 0.96662 1.67932 1.07990 1.30699 1.15740 0.88492 0.87421 0.91131 0.79998 0.80896 0.82972 0.74714 0.90356 0.94247 0.90815 0.87464 0.90014 0.88926 0.94360 0.97271 0.93229 0.85355 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.14 71.24 0.72 -0.68 16 2 C 0.16 3.45 6.78 42.92 0.29 3.74 16 3 C -0.17 -2.92 9.64 22.14 0.21 -2.71 16 4 C -0.05 -0.93 9.89 22.53 0.22 -0.71 16 5 C -0.14 -4.03 5.74 -21.29 -0.12 -4.15 16 6 C -0.02 -0.79 9.34 22.81 0.21 -0.58 16 7 C -0.15 -5.70 5.87 -20.10 -0.12 -5.81 16 8 C 0.55 22.74 7.77 86.76 0.67 23.41 16 9 O -0.59 -26.33 16.29 -3.93 -0.06 -26.40 16 10 N -0.70 -27.94 4.77 -466.05 -2.22 -30.17 16 11 C 0.11 4.18 5.27 86.38 0.46 4.64 16 12 C 0.14 4.77 3.42 45.34 0.15 4.93 16 13 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 14 C -0.11 -2.94 6.48 31.82 0.21 -2.73 16 15 C -0.12 -3.24 7.10 32.03 0.23 -3.02 16 16 C 0.10 3.97 4.78 86.86 0.42 4.39 16 17 N -0.62 -26.96 2.82 -668.26 -1.89 -28.85 16 18 C -0.22 -11.19 8.45 84.03 0.71 -10.48 16 19 H 0.07 3.94 6.58 -2.91 -0.02 3.92 16 20 C -0.01 -0.73 5.46 84.86 0.46 -0.27 16 21 N -0.94 -56.37 13.97 21.65 0.30 -56.07 16 22 Si 0.93 47.65 24.36 68.60 1.67 49.32 16 23 H -0.27 -13.33 6.84 99.48 0.68 -12.65 16 24 H -0.32 -17.06 7.11 99.48 0.71 -16.35 16 25 H -0.28 -14.55 6.64 99.48 0.66 -13.89 16 26 C -0.07 -2.44 9.44 22.27 0.21 -2.23 16 27 C -0.11 -3.92 9.95 22.30 0.22 -3.70 16 28 C 0.13 4.48 6.61 40.36 0.27 4.75 16 29 N -0.51 -15.68 10.23 -176.57 -1.81 -17.49 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.15 4.50 7.62 -2.91 -0.02 4.48 16 36 H 0.41 16.87 3.51 -92.70 -0.33 16.55 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 39 H 0.07 1.86 7.79 -2.39 -0.02 1.84 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.04 1.65 7.40 -2.39 -0.02 1.63 16 44 H 0.01 0.41 5.24 -2.39 -0.01 0.40 16 45 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.13 5.00 6.21 -2.91 -0.02 4.98 16 47 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -73.91 375.10 2.02 -71.89 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.60 Total: 28.98 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.43 Total: 8.78 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -5.61 Total: -132.57 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.06 Total: -26.40 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.67 Total: 49.32 kcal Total: -73.91 2.02 -71.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028213729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.762 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds