Wall clock time and date at job start Tue Mar 31 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39310 * 119.11524 * 2 1 4 4 C 1.36583 * 119.90424 * 179.97438 * 3 2 1 5 5 C 1.40893 * 118.15831 * 359.97438 * 4 3 2 6 6 C 1.40183 * 121.22580 * 180.02562 * 5 4 3 7 7 C 1.38544 * 119.40096 * 179.97438 * 6 5 4 8 8 C 1.47768 * 119.80172 * 179.72195 * 7 6 5 9 9 O 1.21561 * 119.99899 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00144 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47172 * 185.13765 * 11 10 8 13 13 H 1.08997 * 109.87411 * 303.57508 * 12 11 10 14 14 C 1.54321 * 109.88279 * 64.58995 * 12 11 10 15 15 C 1.55162 * 102.93996 * 141.61115 * 14 12 11 16 16 C 1.54902 * 101.58141 * 324.49641 * 15 14 12 17 17 N 1.47027 * 109.88166 * 182.40011 * 12 11 10 18 18 C 1.36936 * 125.64804 * 61.61978 * 17 12 11 19 19 H 1.08003 * 120.00181 * 14.76126 * 18 17 12 20 20 C 1.38813 * 119.99860 * 194.75687 * 18 17 12 21 21 N 1.31612 * 119.99880 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47461 * 119.99886 * 22 20 18 25 25 H 1.48502 * 109.47340 * 240.00371 * 22 20 18 26 26 C 1.40629 * 120.39468 * 359.97438 * 7 6 5 27 27 C 1.35703 * 120.92380 * 0.03159 * 26 7 6 28 28 C 1.40758 * 120.10897 * 359.94417 * 27 26 7 29 29 N 1.31118 * 119.11086 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47023 * 89.99839 * 1 2 3 31 31 H 1.08996 * 109.47493 * 210.00672 * 1 2 3 32 32 H 1.09007 * 109.46921 * 330.00126 * 1 2 3 33 33 H 1.07993 * 120.05345 * 359.95112 * 3 2 1 34 34 H 1.07992 * 120.92346 * 180.02562 * 4 3 2 35 35 H 1.07998 * 120.29468 * 0.02562 * 6 5 4 36 36 H 0.97000 * 119.99750 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.47517 * 305.13659 * 11 10 8 38 38 H 1.09006 * 109.47402 * 65.13681 * 11 10 8 39 39 H 1.08998 * 110.71970 * 259.97201 * 14 12 11 40 40 H 1.09003 * 110.72169 * 23.25181 * 14 12 11 41 41 H 1.08993 * 111.00450 * 82.57359 * 15 14 12 42 42 H 1.09005 * 111.00236 * 206.42082 * 15 14 12 43 43 H 1.09003 * 110.36442 * 155.84929 * 16 15 14 44 44 H 1.09002 * 110.37289 * 278.05947 * 16 15 14 45 45 H 0.97012 * 119.99878 * 180.02562 * 21 20 18 46 46 H 1.08007 * 119.53872 * 179.97438 * 26 7 6 47 47 H 1.07993 * 119.94684 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2359 0.0005 5 6 4.2325 0.0030 0.0016 6 6 5.6332 -0.0528 0.0027 7 6 6.2648 -1.2858 0.0043 8 6 7.7409 -1.3549 -0.0007 9 8 8.3972 -0.3317 -0.0057 10 7 8.3595 -2.5523 0.0014 11 6 9.8228 -2.6208 -0.0042 12 6 10.2647 -4.0803 -0.1296 13 1 9.8287 -4.6700 0.6767 14 6 9.8203 -4.6477 -1.4942 15 6 11.0199 -5.5416 -1.9060 16 6 12.2171 -4.7310 -1.3501 17 7 11.7316 -4.1648 -0.0784 18 6 12.5168 -3.7808 0.9757 19 1 12.0721 -3.6028 1.9437 20 6 13.8844 -3.6203 0.8001 21 7 14.4263 -3.8367 -0.3797 22 14 14.9557 -3.0972 2.2381 23 1 14.1103 -2.9184 3.4459 24 1 15.9784 -4.1417 2.4993 25 1 15.6299 -1.8147 1.9124 26 6 5.5096 -2.4721 0.0054 27 6 4.1531 -2.4352 0.0042 28 6 3.4804 -1.1988 0.0031 29 7 2.1449 -1.1456 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5139 33 1 1.6314 2.1444 -0.0008 34 1 4.0927 2.1698 0.0010 35 1 6.2147 0.8574 0.0032 36 1 7.8358 -3.3688 0.0058 37 1 10.2102 -2.0502 -0.8483 38 1 10.2097 -2.2027 0.9252 39 1 8.9140 -5.2438 -1.3874 40 1 9.6722 -3.8446 -2.2161 41 1 10.9578 -6.5213 -1.4324 42 1 11.0821 -5.6368 -2.9901 43 1 13.0694 -5.3868 -1.1725 44 1 12.4901 -3.9344 -2.0422 45 1 15.3821 -3.7249 -0.5023 46 1 6.0163 -3.4260 0.0062 47 1 3.5887 -3.3559 0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028213730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:54 Heat of formation + Delta-G solvation = 37.441795 kcal Electronic energy + Delta-G solvation = -28021.896232 eV Core-core repulsion = 24169.752059 eV Total energy + Delta-G solvation = -3852.144173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22497 -39.63059 -37.77592 -37.03982 -34.44373 -33.80509 -32.57626 -32.32580 -30.36771 -29.79288 -29.04016 -27.96259 -25.04575 -24.27200 -24.16687 -22.97584 -22.30625 -20.82483 -20.19189 -19.62146 -18.39749 -18.07024 -16.72885 -16.72032 -16.08060 -15.68222 -15.21662 -14.96007 -14.81354 -14.66215 -14.43130 -14.10976 -13.89082 -13.73297 -13.53804 -13.41913 -13.24555 -13.00518 -12.61247 -12.32255 -12.11489 -11.92009 -11.83198 -11.71086 -11.51369 -11.30764 -10.95421 -10.91384 -10.81818 -10.26798 -10.11608 -9.99309 -9.87168 -9.84373 -9.78111 -9.68249 -9.05175 -8.75318 -8.61089 -8.48207 -6.86000 -5.78732 -3.15477 -0.04735 0.36769 1.62452 2.21846 3.27193 3.31090 3.39383 3.45439 3.47097 3.78273 3.84310 4.21505 4.30855 4.44460 4.46295 4.62016 4.70689 4.82533 4.89155 5.03668 5.12943 5.16751 5.31023 5.37932 5.43942 5.47537 5.54058 5.57291 5.60595 5.68663 5.72330 5.78871 5.95481 6.00154 6.05020 6.12908 6.18855 6.22300 6.43670 6.44879 6.52405 6.58640 6.66938 6.78422 7.02864 7.49706 7.57637 7.59568 7.71227 7.77750 8.23314 8.38535 9.15527 9.76030 10.43221 11.33316 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002116 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.862912 B =13230.612039 C =14014.038253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.164 3.836 3 C -0.179 4.179 4 C -0.043 4.043 5 C -0.118 4.118 6 C -0.027 4.027 7 C -0.129 4.129 8 C 0.550 3.450 9 O -0.538 6.538 10 N -0.715 5.715 11 C 0.108 3.892 12 C 0.151 3.849 13 H 0.038 0.962 14 C -0.127 4.127 15 C -0.149 4.149 16 C 0.172 3.828 17 N -0.588 5.588 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C -0.072 4.072 27 C -0.101 4.101 28 C 0.148 3.852 29 N -0.480 5.480 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.395 0.605 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.253 0.747 46 H 0.135 0.865 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.757 5.106 -1.556 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.011 3.989 3 C -0.199 4.199 4 C -0.068 4.068 5 C -0.120 4.120 6 C -0.047 4.047 7 C -0.132 4.132 8 C 0.336 3.664 9 O -0.416 6.416 10 N -0.366 5.366 11 C -0.017 4.017 12 C 0.043 3.957 13 H 0.055 0.945 14 C -0.165 4.165 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.362 4.362 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.561 5.561 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.092 4.092 27 C -0.119 4.119 28 C 0.026 3.974 29 N -0.190 5.190 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.153 0.847 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.350 4.990 -1.515 26.861 hybrid contribution 0.909 0.806 0.690 1.397 sum -25.441 5.796 -0.825 26.106 Atomic orbital electron populations 1.20807 0.88512 1.03787 1.03410 1.21565 0.97242 0.88237 0.91811 1.21718 0.94983 0.99333 1.03848 1.21582 0.94513 0.97373 0.93366 1.18808 0.94376 0.94332 1.04529 1.21459 0.92193 0.98245 0.92753 1.20086 0.93768 0.94017 1.05350 1.18176 0.86778 0.84184 0.77270 1.90791 1.66646 1.34206 1.49978 1.46074 1.09146 1.07437 1.73950 1.22306 0.76103 1.00524 1.02727 1.21137 0.87628 0.91745 0.95204 0.94456 1.22618 0.97689 0.99036 0.97159 1.23006 0.97580 0.98691 0.99449 1.21452 0.93024 0.94619 0.86174 1.44487 0.98636 1.72662 1.15447 1.19031 0.88924 1.39854 0.88421 0.90569 1.24927 0.97220 1.00891 0.96865 1.69948 1.10925 1.53979 1.21207 0.86070 0.80426 0.78014 0.81399 1.20356 1.21703 1.21593 1.20999 0.93779 0.97794 0.96647 1.20651 0.93698 0.96569 1.00992 1.18957 0.89074 0.92926 0.96446 1.67896 1.08338 1.28751 1.13975 0.89992 0.90181 0.90402 0.84342 0.83908 0.83673 0.77031 0.91357 0.91305 0.92387 0.91779 0.92273 0.92319 0.90976 0.95561 0.93629 0.84724 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.14 36.01 0.37 -0.20 16 2 C 0.16 1.42 6.78 -82.50 -0.56 0.86 16 3 C -0.18 -1.32 9.64 -39.78 -0.38 -1.70 16 4 C -0.04 -0.36 9.89 -39.18 -0.39 -0.75 16 5 C -0.12 -1.30 5.74 -106.81 -0.61 -1.91 16 6 C -0.03 -0.32 9.35 -38.74 -0.36 -0.68 16 7 C -0.13 -1.63 5.87 -104.99 -0.62 -2.25 16 8 C 0.55 8.75 7.77 -12.36 -0.10 8.66 16 9 O -0.54 -10.71 16.30 5.31 0.09 -10.62 16 10 N -0.72 -10.69 5.28 -61.27 -0.32 -11.01 16 11 C 0.11 2.07 5.07 -4.04 -0.02 2.05 16 12 C 0.15 2.93 3.22 -66.95 -0.22 2.72 16 13 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 14 C -0.13 -2.07 6.10 -24.90 -0.15 -2.22 16 15 C -0.15 -2.68 7.08 -24.58 -0.17 -2.86 16 16 C 0.17 4.06 5.41 -2.53 -0.01 4.05 16 17 N -0.59 -14.43 3.13 -162.57 -0.51 -14.94 16 18 C -0.23 -6.36 9.76 -15.06 -0.15 -6.51 16 19 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 20 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 21 N -0.91 -26.54 10.58 55.49 0.59 -25.95 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C -0.07 -0.73 9.44 -39.59 -0.37 -1.11 16 27 C -0.10 -1.03 9.95 -39.54 -0.39 -1.42 16 28 C 0.15 1.70 6.61 -84.77 -0.56 1.14 16 29 N -0.48 -5.33 10.23 -7.16 -0.07 -5.40 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 33 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.68 7.62 -52.49 -0.40 1.28 16 36 H 0.40 4.61 6.32 -40.82 -0.26 4.35 16 37 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 38 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.05 7.81 -51.93 -0.41 0.64 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 44 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 45 H 0.25 7.14 8.31 -40.81 -0.34 6.80 16 46 H 0.14 1.05 6.35 -52.48 -0.33 0.71 16 47 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -33.64 385.98 -11.01 -44.66 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.78 Total: 2.69 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -4.80 Total: -2.28 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.32 Total: -57.31 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.64 -11.01 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028213730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.098 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds