Wall clock time and date at job start Tue Mar 31 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39310 * 119.11524 * 2 1 4 4 C 1.36583 * 119.90424 * 179.97438 * 3 2 1 5 5 C 1.40893 * 118.15831 * 359.97438 * 4 3 2 6 6 C 1.40183 * 121.22580 * 180.02562 * 5 4 3 7 7 C 1.38544 * 119.40096 * 179.97438 * 6 5 4 8 8 C 1.47768 * 119.80172 * 179.72195 * 7 6 5 9 9 O 1.21561 * 119.99899 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00144 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47172 * 185.13765 * 11 10 8 13 13 H 1.08997 * 109.87411 * 303.57508 * 12 11 10 14 14 C 1.54321 * 109.88279 * 64.58995 * 12 11 10 15 15 C 1.55162 * 102.93996 * 141.61115 * 14 12 11 16 16 C 1.54902 * 101.58141 * 324.49641 * 15 14 12 17 17 N 1.47027 * 109.88166 * 182.40011 * 12 11 10 18 18 C 1.36936 * 125.64804 * 61.61978 * 17 12 11 19 19 H 1.08003 * 120.00181 * 14.76126 * 18 17 12 20 20 C 1.38813 * 119.99860 * 194.75687 * 18 17 12 21 21 N 1.31612 * 119.99880 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47461 * 119.99886 * 22 20 18 25 25 H 1.48502 * 109.47340 * 240.00371 * 22 20 18 26 26 C 1.40629 * 120.39468 * 359.97438 * 7 6 5 27 27 C 1.35703 * 120.92380 * 0.03159 * 26 7 6 28 28 C 1.40758 * 120.10897 * 359.94417 * 27 26 7 29 29 N 1.31118 * 119.11086 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47023 * 89.99839 * 1 2 3 31 31 H 1.08996 * 109.47493 * 210.00672 * 1 2 3 32 32 H 1.09007 * 109.46921 * 330.00126 * 1 2 3 33 33 H 1.07993 * 120.05345 * 359.95112 * 3 2 1 34 34 H 1.07992 * 120.92346 * 180.02562 * 4 3 2 35 35 H 1.07998 * 120.29468 * 0.02562 * 6 5 4 36 36 H 0.97000 * 119.99750 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.47517 * 305.13659 * 11 10 8 38 38 H 1.09006 * 109.47402 * 65.13681 * 11 10 8 39 39 H 1.08998 * 110.71970 * 259.97201 * 14 12 11 40 40 H 1.09003 * 110.72169 * 23.25181 * 14 12 11 41 41 H 1.08993 * 111.00450 * 82.57359 * 15 14 12 42 42 H 1.09005 * 111.00236 * 206.42082 * 15 14 12 43 43 H 1.09003 * 110.36442 * 155.84929 * 16 15 14 44 44 H 1.09002 * 110.37289 * 278.05947 * 16 15 14 45 45 H 0.97012 * 119.99878 * 180.02562 * 21 20 18 46 46 H 1.08007 * 119.53872 * 179.97438 * 26 7 6 47 47 H 1.07993 * 119.94684 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2359 0.0005 5 6 4.2325 0.0030 0.0016 6 6 5.6332 -0.0528 0.0027 7 6 6.2648 -1.2858 0.0043 8 6 7.7409 -1.3549 -0.0007 9 8 8.3972 -0.3317 -0.0057 10 7 8.3595 -2.5523 0.0014 11 6 9.8228 -2.6208 -0.0042 12 6 10.2647 -4.0803 -0.1296 13 1 9.8287 -4.6700 0.6767 14 6 9.8203 -4.6477 -1.4942 15 6 11.0199 -5.5416 -1.9060 16 6 12.2171 -4.7310 -1.3501 17 7 11.7316 -4.1648 -0.0784 18 6 12.5168 -3.7808 0.9757 19 1 12.0721 -3.6028 1.9437 20 6 13.8844 -3.6203 0.8001 21 7 14.4263 -3.8367 -0.3797 22 14 14.9557 -3.0972 2.2381 23 1 14.1103 -2.9184 3.4459 24 1 15.9784 -4.1417 2.4993 25 1 15.6299 -1.8147 1.9124 26 6 5.5096 -2.4721 0.0054 27 6 4.1531 -2.4352 0.0042 28 6 3.4804 -1.1988 0.0031 29 7 2.1449 -1.1456 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5139 33 1 1.6314 2.1444 -0.0008 34 1 4.0927 2.1698 0.0010 35 1 6.2147 0.8574 0.0032 36 1 7.8358 -3.3688 0.0058 37 1 10.2102 -2.0502 -0.8483 38 1 10.2097 -2.2027 0.9252 39 1 8.9140 -5.2438 -1.3874 40 1 9.6722 -3.8446 -2.2161 41 1 10.9578 -6.5213 -1.4324 42 1 11.0821 -5.6368 -2.9901 43 1 13.0694 -5.3868 -1.1725 44 1 12.4901 -3.9344 -2.0422 45 1 15.3821 -3.7249 -0.5023 46 1 6.0163 -3.4260 0.0062 47 1 3.5887 -3.3559 0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028213730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:53 Heat of formation + Delta-G solvation = 16.348705 kcal Electronic energy + Delta-G solvation = -28022.810897 eV Core-core repulsion = 24169.752059 eV Total energy + Delta-G solvation = -3853.058838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.00661 -40.85110 -39.33068 -37.96576 -35.89844 -34.57782 -34.40368 -33.12788 -31.45622 -31.14022 -30.53914 -28.88158 -26.75175 -25.82058 -24.93615 -23.99356 -23.07599 -22.14318 -21.72301 -21.18722 -19.48902 -18.98047 -18.52533 -17.66123 -17.11273 -16.94935 -16.51770 -16.43140 -15.94759 -15.72352 -15.64550 -15.45128 -14.87566 -14.77673 -14.70130 -14.47649 -13.99859 -13.92617 -13.84195 -13.67435 -13.41788 -13.12914 -13.01818 -12.99030 -12.86479 -12.70200 -12.45600 -12.26824 -11.99123 -11.88918 -11.73626 -11.62597 -11.49680 -11.40253 -11.14974 -10.69919 -10.53795 -10.18894 -9.73504 -9.32862 -8.86896 -7.89822 -5.27290 -0.83856 -0.36685 0.83548 1.36732 1.42861 1.45055 1.54311 2.04689 2.24151 2.48355 3.03126 3.14557 3.29967 3.53132 3.55443 3.65150 3.77717 3.84502 3.95254 3.96181 3.98232 4.02385 4.23421 4.28417 4.38481 4.44875 4.53826 4.67412 4.72549 4.81065 4.82171 4.85879 4.93171 4.96567 4.99770 5.00387 5.13946 5.17674 5.20010 5.20184 5.25214 5.32366 5.46685 5.51372 5.56124 5.66163 5.74394 5.77952 6.22034 6.50161 6.88168 7.07967 7.15476 7.75137 8.40982 9.21323 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002116 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.862912 B =13230.612039 C =14014.038253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.172 4.172 4 C -0.050 4.050 5 C -0.135 4.135 6 C -0.028 4.028 7 C -0.146 4.146 8 C 0.551 3.449 9 O -0.587 6.587 10 N -0.699 5.699 11 C 0.129 3.871 12 C 0.147 3.853 13 H 0.055 0.945 14 C -0.114 4.114 15 C -0.133 4.133 16 C 0.173 3.827 17 N -0.610 5.610 18 C -0.238 4.238 19 H 0.078 0.922 20 C -0.062 4.062 21 N -0.945 5.945 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.296 1.296 26 C -0.067 4.067 27 C -0.102 4.102 28 C 0.131 3.869 29 N -0.507 5.507 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.415 0.585 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.036 0.964 44 H -0.009 1.009 45 H 0.247 0.753 46 H 0.161 0.839 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.726 4.762 -1.327 31.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.008 3.992 3 C -0.191 4.191 4 C -0.076 4.076 5 C -0.138 4.138 6 C -0.048 4.048 7 C -0.149 4.149 8 C 0.339 3.661 9 O -0.469 6.469 10 N -0.351 5.351 11 C 0.002 3.998 12 C 0.040 3.960 13 H 0.073 0.927 14 C -0.152 4.152 15 C -0.172 4.172 16 C 0.048 3.952 17 N -0.334 5.334 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.215 1.215 25 H -0.223 1.223 26 C -0.087 4.087 27 C -0.120 4.120 28 C 0.010 3.990 29 N -0.218 5.218 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.193 0.807 34 H 0.182 0.818 35 H 0.157 0.843 36 H 0.254 0.746 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.009 0.991 45 H 0.057 0.943 46 H 0.178 0.822 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -30.390 4.611 -1.278 30.764 hybrid contribution 1.926 1.014 0.623 2.264 sum -28.464 5.626 -0.654 29.022 Atomic orbital electron populations 1.20929 0.86080 1.04877 1.04458 1.22280 0.98962 0.88171 0.89833 1.22131 0.94645 1.00400 1.01949 1.21926 0.95341 0.97357 0.92948 1.18955 0.93830 0.95554 1.05422 1.21512 0.92910 0.97937 0.92467 1.19840 0.91442 0.95504 1.08110 1.18682 0.88160 0.83415 0.75797 1.90762 1.68032 1.35843 1.52231 1.45739 1.07350 1.08394 1.73625 1.21750 0.78490 0.99802 0.99734 1.21358 0.84839 0.91817 0.97970 0.92722 1.22621 0.98765 0.99087 0.94709 1.22872 0.95126 0.98428 1.00743 1.21267 0.94631 0.93636 0.85658 1.44749 1.00913 1.72823 1.14962 1.19342 0.89506 1.38449 0.89424 0.90465 1.25699 0.98652 1.01952 0.99222 1.70148 1.10599 1.55632 1.22957 0.85114 0.78747 0.77045 0.79081 1.19113 1.21513 1.22294 1.21131 0.93774 0.97733 0.96096 1.20881 0.93700 0.97019 1.00426 1.19284 0.89689 0.93555 0.96496 1.67968 1.08081 1.30138 1.15588 0.88762 0.90620 0.87822 0.80710 0.81795 0.84272 0.74642 0.94369 0.94560 0.87419 0.91779 0.90951 0.89976 0.94587 0.99114 0.94327 0.82165 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.14 71.24 0.72 -0.04 16 2 C 0.16 2.34 6.78 42.92 0.29 2.63 16 3 C -0.17 -2.00 9.64 22.14 0.21 -1.78 16 4 C -0.05 -0.76 9.89 22.53 0.22 -0.53 16 5 C -0.14 -2.84 5.74 -21.28 -0.12 -2.97 16 6 C -0.03 -0.68 9.35 22.82 0.21 -0.46 16 7 C -0.15 -3.63 5.87 -20.10 -0.12 -3.74 16 8 C 0.55 17.70 7.77 86.76 0.67 18.37 16 9 O -0.59 -24.39 16.30 -3.91 -0.06 -24.46 16 10 N -0.70 -20.35 5.28 -466.04 -2.46 -22.81 16 11 C 0.13 5.00 5.07 86.38 0.44 5.43 16 12 C 0.15 5.57 3.22 45.34 0.15 5.72 16 13 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 14 C -0.11 -3.39 6.10 31.78 0.19 -3.19 16 15 C -0.13 -4.54 7.08 31.99 0.23 -4.32 16 16 C 0.17 8.41 5.41 86.85 0.47 8.88 16 17 N -0.61 -30.53 3.13 -668.26 -2.09 -32.62 16 18 C -0.24 -13.29 9.76 84.03 0.82 -12.47 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 20 C -0.06 -3.54 5.47 84.86 0.46 -3.08 16 21 N -0.95 -57.39 10.58 21.65 0.23 -57.16 16 22 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 C -0.07 -1.25 9.44 22.27 0.21 -1.04 16 27 C -0.10 -1.89 9.95 22.30 0.22 -1.67 16 28 C 0.13 2.84 6.61 40.36 0.27 3.11 16 29 N -0.51 -10.36 10.23 -176.57 -1.81 -12.17 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.22 8.07 -2.38 -0.02 0.20 16 33 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.14 3.36 7.62 -2.91 -0.02 3.34 16 36 H 0.42 8.59 6.32 -92.71 -0.59 8.00 16 37 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 38 H 0.04 1.63 7.92 -2.38 -0.02 1.61 16 39 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 1.94 7.81 -2.39 -0.02 1.92 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.04 1.97 6.94 -2.39 -0.02 1.96 16 44 H -0.01 -0.50 8.06 -2.39 -0.02 -0.52 16 45 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 46 H 0.16 1.97 6.35 -2.91 -0.02 1.95 16 47 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -78.94 385.98 1.79 -77.14 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.40 Total: 14.47 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 5.55 Total: 8.84 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.13 Total: -124.75 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.06 Total: -24.46 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -78.94 1.79 -77.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028213730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.491 kcal (2) G-P(sol) polarization free energy of solvation -78.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds