Wall clock time and date at job start Tue Mar 31 2020 22:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39319 * 119.05618 * 2 1 4 4 C 1.38853 * 119.57493 * 180.02562 * 3 2 1 5 5 C 1.47907 * 121.10866 * 180.02562 * 4 3 2 6 6 O 1.21545 * 119.99767 * 174.54938 * 5 4 3 7 7 N 1.34774 * 120.00362 * 354.54938 * 5 4 3 8 8 C 1.46495 * 120.00440 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47489 * 184.87480 * 8 7 5 10 10 H 1.09000 * 109.99663 * 53.44659 * 9 8 7 11 11 C 1.54319 * 109.88354 * 292.35600 * 9 8 7 12 12 C 1.55279 * 103.00806 * 218.46665 * 11 9 8 13 13 C 1.54914 * 101.52727 * 35.35978 * 12 11 9 14 14 N 1.47022 * 109.88475 * 174.54315 * 9 8 7 15 15 C 1.36941 * 125.64879 * 298.33649 * 14 9 8 16 16 H 1.08006 * 119.99917 * 351.04753 * 15 14 9 17 17 C 1.38812 * 120.00154 * 171.04333 * 15 14 9 18 18 N 1.31622 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47184 * 60.00317 * 19 17 15 21 21 H 1.48505 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47157 * 299.99842 * 19 17 15 23 23 C 1.41830 * 117.77931 * 0.26697 * 4 3 2 24 24 C 1.40092 * 121.36362 * 180.34256 * 23 4 3 25 25 C 1.36262 * 119.64097 * 179.74861 * 24 23 4 26 26 C 1.39348 * 120.83259 * 359.68291 * 25 24 23 27 27 C 1.36063 * 121.05006 * 359.97438 * 26 25 24 28 28 C 1.40711 * 119.74246 * 0.02681 * 27 26 25 29 29 N 1.30963 * 119.06135 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47280 * 90.00100 * 1 2 3 31 31 H 1.09002 * 109.46959 * 210.00238 * 1 2 3 32 32 H 1.08995 * 109.47155 * 330.00098 * 1 2 3 33 33 H 1.07998 * 120.20830 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99320 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.46919 * 64.87273 * 8 7 5 36 36 H 1.09008 * 109.47098 * 304.87598 * 8 7 5 37 37 H 1.09002 * 110.72041 * 336.74845 * 11 9 8 38 38 H 1.08998 * 110.72711 * 100.02182 * 11 9 8 39 39 H 1.08996 * 110.96104 * 277.33575 * 12 11 9 40 40 H 1.08994 * 111.10263 * 153.44276 * 12 11 9 41 41 H 1.09006 * 110.36429 * 204.23939 * 13 12 11 42 42 H 1.08997 * 110.36968 * 82.02287 * 13 12 11 43 43 H 0.97001 * 120.00132 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.18535 * 359.43061 * 24 23 4 45 45 H 1.07997 * 119.58242 * 179.69476 * 25 24 23 46 46 H 1.07993 * 119.47300 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.12963 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5721 1.2304 -0.0005 5 6 4.3248 2.5036 0.0000 6 8 5.5361 2.4934 0.0995 7 7 3.6676 3.6751 -0.1098 8 6 4.4131 4.9362 -0.1098 9 6 3.4311 6.1093 -0.1230 10 1 2.7176 6.0073 0.6947 11 6 2.6815 6.1511 -1.4713 12 6 2.5815 7.6719 -1.7686 13 6 3.9270 8.1876 -1.1998 14 7 4.1644 7.3768 0.0083 15 6 4.9391 7.7437 1.0762 16 1 4.9364 7.1462 1.9759 17 6 5.7282 8.8833 1.0023 18 7 5.7320 9.6111 -0.0945 19 14 6.7856 9.3833 2.4587 20 1 7.7514 8.2977 2.7651 21 1 7.5276 10.6265 2.1281 22 1 5.9190 9.6231 3.6404 23 6 4.2445 -0.0184 -0.0069 24 6 5.6434 -0.0933 -0.0007 25 6 6.2529 -1.3120 -0.0020 26 6 5.5023 -2.4860 -0.0027 27 6 4.1422 -2.4494 -0.0017 28 6 3.4773 -1.2093 -0.0004 29 7 2.1432 -1.1447 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5138 33 1 1.6317 2.1461 0.0004 34 1 2.7008 3.6832 -0.1888 35 1 5.0473 4.9833 -0.9951 36 1 5.0333 4.9916 0.7849 37 1 3.2556 5.6452 -2.2476 38 1 1.6893 5.7103 -1.3749 39 1 1.7380 8.1176 -1.2413 40 1 2.5132 7.8587 -2.8402 41 1 3.8489 9.2431 -0.9390 42 1 4.7281 8.0345 -1.9229 43 1 6.2831 10.4077 -0.1460 44 1 6.2356 0.8098 -0.0002 45 1 7.3314 -1.3687 -0.0022 46 1 6.0082 -3.4401 -0.0033 47 1 3.5751 -3.3685 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028303194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:57 Heat of formation + Delta-G solvation = 46.172615 kcal Electronic energy + Delta-G solvation = -28692.958194 eV Core-core repulsion = 24841.192618 eV Total energy + Delta-G solvation = -3851.765577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29711 -39.36636 -37.71016 -37.55159 -34.53380 -33.60306 -32.54059 -32.23805 -30.48582 -29.62859 -28.67519 -27.96364 -25.37213 -24.63829 -23.92886 -22.79236 -22.49321 -20.69164 -20.18247 -19.54860 -18.21477 -17.62788 -17.52810 -16.70084 -15.91544 -15.48335 -15.36122 -15.04978 -14.94952 -14.65964 -14.57515 -14.11084 -13.88548 -13.68422 -13.36640 -13.25962 -13.16516 -13.03252 -12.54771 -12.15417 -11.94218 -11.87901 -11.77120 -11.57904 -11.54994 -11.42908 -11.01607 -10.81644 -10.64026 -10.37896 -10.29700 -10.16750 -9.96461 -9.87957 -9.70398 -9.34289 -8.92695 -8.89403 -8.64949 -8.38633 -6.93851 -5.78321 -3.16342 -0.07447 0.57408 1.57697 2.58620 3.08443 3.11006 3.38433 3.43092 3.43951 3.88101 3.93537 4.26390 4.40940 4.46041 4.55572 4.65036 4.87669 4.98518 5.09540 5.16239 5.25349 5.27415 5.29906 5.31728 5.41916 5.48864 5.54605 5.56260 5.67275 5.73893 5.86712 5.93474 5.94043 6.04586 6.14733 6.15920 6.32198 6.34662 6.38782 6.46409 6.53290 6.61289 6.69250 6.73075 6.95356 7.49149 7.52298 7.55256 7.65633 7.76491 8.20296 8.23676 9.13029 9.73563 10.38223 11.31022 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.002720 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.781935 B =10290.181811 C =11550.522242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.153 3.847 3 C -0.139 4.139 4 C -0.060 4.060 5 C 0.552 3.448 6 O -0.526 6.526 7 N -0.709 5.709 8 C 0.106 3.894 9 C 0.152 3.848 10 H 0.039 0.961 11 C -0.129 4.129 12 C -0.148 4.148 13 C 0.166 3.834 14 N -0.588 5.588 15 C -0.234 4.234 16 H 0.077 0.923 17 C -0.003 4.003 18 N -0.918 5.918 19 Si 0.912 3.088 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.284 1.284 23 C -0.073 4.073 24 C -0.095 4.095 25 C -0.124 4.124 26 C -0.095 4.095 27 C -0.104 4.104 28 C 0.130 3.870 29 N -0.464 5.464 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.396 0.604 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.021 0.979 43 H 0.254 0.746 44 H 0.171 0.829 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 -20.265 -2.552 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.001 3.999 3 C -0.160 4.160 4 C -0.071 4.071 5 C 0.338 3.662 6 O -0.404 6.404 7 N -0.359 5.359 8 C -0.019 4.019 9 C 0.043 3.957 10 H 0.057 0.943 11 C -0.167 4.167 12 C -0.187 4.187 13 C 0.041 3.959 14 N -0.313 5.313 15 C -0.362 4.362 16 H 0.095 0.905 17 C -0.199 4.199 18 N -0.564 5.564 19 Si 0.742 3.258 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.076 4.076 24 C -0.113 4.113 25 C -0.142 4.142 26 C -0.115 4.115 27 C -0.123 4.123 28 C 0.008 3.992 29 N -0.174 5.174 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.187 0.813 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.682 -20.826 -2.426 22.693 hybrid contribution 0.666 0.968 0.670 1.353 sum -8.016 -19.858 -1.755 21.486 Atomic orbital electron populations 1.20801 0.88085 1.03954 1.03532 1.21400 0.97283 0.87638 0.93597 1.22260 0.93555 0.99842 1.00359 1.20500 0.93698 0.93671 0.99212 1.18058 0.87230 0.83315 0.77589 1.90605 1.13531 1.86468 1.49788 1.46086 1.10875 1.06322 1.72657 1.22398 0.96001 0.80554 1.02900 1.21118 0.92474 0.86819 0.95267 0.94340 1.22666 0.98915 0.97861 0.97240 1.23027 1.01043 0.94897 0.99684 1.21614 0.89936 0.97377 0.86926 1.44503 1.56128 1.11850 1.18774 1.18971 1.17629 1.07800 0.91801 0.90536 1.24840 0.99294 0.98315 0.97500 1.69910 1.42805 1.17581 1.26119 0.86195 0.80293 0.77755 0.81516 1.20961 1.21523 1.21053 1.18687 0.95205 0.92050 1.01627 1.22131 0.93480 1.00614 0.95075 1.21108 1.00596 0.92242 1.00281 1.20989 0.93739 0.98859 0.97937 1.20734 0.94204 0.95970 1.01347 1.18832 0.88745 0.92969 0.98605 1.67618 1.08835 1.28827 1.12129 0.89918 0.90143 0.90182 0.83959 0.76897 0.91573 0.90643 0.91805 0.92345 0.92235 0.92287 0.89637 0.96098 0.93527 0.81262 0.85364 0.85330 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.14 36.01 0.37 -0.35 16 2 C 0.15 1.61 6.78 -82.56 -0.56 1.05 16 3 C -0.14 -1.47 9.21 -38.95 -0.36 -1.83 16 4 C -0.06 -0.80 5.94 -104.34 -0.62 -1.42 16 5 C 0.55 8.60 7.75 -12.30 -0.10 8.50 16 6 O -0.53 -9.85 13.52 5.33 0.07 -9.77 16 7 N -0.71 -10.14 5.37 -61.23 -0.33 -10.47 16 8 C 0.11 1.94 5.11 -4.05 -0.02 1.92 16 9 C 0.15 2.85 3.21 -66.96 -0.22 2.63 16 10 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.13 -2.01 6.12 -24.83 -0.15 -2.16 16 12 C -0.15 -2.60 7.10 -24.51 -0.17 -2.77 16 13 C 0.17 3.85 5.54 -2.53 -0.01 3.84 16 14 N -0.59 -14.16 3.13 -162.57 -0.51 -14.66 16 15 C -0.23 -6.27 9.73 -15.06 -0.15 -6.42 16 16 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 17 C 0.00 -0.07 5.48 -17.43 -0.10 -0.17 16 18 N -0.92 -26.21 10.36 55.49 0.57 -25.64 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.07 -1.02 5.76 -106.52 -0.61 -1.64 16 24 C -0.10 -1.30 9.25 -39.60 -0.37 -1.66 16 25 C -0.12 -1.35 9.96 -39.88 -0.40 -1.75 16 26 C -0.10 -0.91 9.94 -39.95 -0.40 -1.30 16 27 C -0.10 -1.12 9.98 -39.43 -0.39 -1.51 16 28 C 0.13 1.70 6.61 -84.87 -0.56 1.14 16 29 N -0.46 -5.78 10.19 -7.25 -0.07 -5.85 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.14 1.06 6.55 -52.49 -0.34 0.72 16 34 H 0.40 4.38 6.45 -40.82 -0.26 4.12 16 35 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 36 H 0.08 1.59 7.83 -51.92 -0.41 1.18 16 37 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 2.23 6.51 -51.93 -0.34 1.89 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.17 2.60 4.98 -52.49 -0.26 2.34 16 45 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -32.16 380.51 -10.99 -43.15 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.62 Total: 4.61 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -4.81 Total: -3.91 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.34 Total: -56.63 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.16 -10.99 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028303194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.322 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds