Wall clock time and date at job start Tue Mar 31 2020 22:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39319 * 119.05618 * 2 1 4 4 C 1.38853 * 119.57493 * 180.02562 * 3 2 1 5 5 C 1.47907 * 121.10866 * 180.02562 * 4 3 2 6 6 O 1.21545 * 119.99767 * 174.54938 * 5 4 3 7 7 N 1.34774 * 120.00362 * 354.54938 * 5 4 3 8 8 C 1.46495 * 120.00440 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47489 * 184.87480 * 8 7 5 10 10 H 1.09000 * 109.99663 * 53.44659 * 9 8 7 11 11 C 1.54319 * 109.88354 * 292.35600 * 9 8 7 12 12 C 1.55279 * 103.00806 * 218.46665 * 11 9 8 13 13 C 1.54914 * 101.52727 * 35.35978 * 12 11 9 14 14 N 1.47022 * 109.88475 * 174.54315 * 9 8 7 15 15 C 1.36941 * 125.64879 * 298.33649 * 14 9 8 16 16 H 1.08006 * 119.99917 * 351.04753 * 15 14 9 17 17 C 1.38812 * 120.00154 * 171.04333 * 15 14 9 18 18 N 1.31622 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47184 * 60.00317 * 19 17 15 21 21 H 1.48505 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47157 * 299.99842 * 19 17 15 23 23 C 1.41830 * 117.77931 * 0.26697 * 4 3 2 24 24 C 1.40092 * 121.36362 * 180.34256 * 23 4 3 25 25 C 1.36262 * 119.64097 * 179.74861 * 24 23 4 26 26 C 1.39348 * 120.83259 * 359.68291 * 25 24 23 27 27 C 1.36063 * 121.05006 * 359.97438 * 26 25 24 28 28 C 1.40711 * 119.74246 * 0.02681 * 27 26 25 29 29 N 1.30963 * 119.06135 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47280 * 90.00100 * 1 2 3 31 31 H 1.09002 * 109.46959 * 210.00238 * 1 2 3 32 32 H 1.08995 * 109.47155 * 330.00098 * 1 2 3 33 33 H 1.07998 * 120.20830 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99320 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.46919 * 64.87273 * 8 7 5 36 36 H 1.09008 * 109.47098 * 304.87598 * 8 7 5 37 37 H 1.09002 * 110.72041 * 336.74845 * 11 9 8 38 38 H 1.08998 * 110.72711 * 100.02182 * 11 9 8 39 39 H 1.08996 * 110.96104 * 277.33575 * 12 11 9 40 40 H 1.08994 * 111.10263 * 153.44276 * 12 11 9 41 41 H 1.09006 * 110.36429 * 204.23939 * 13 12 11 42 42 H 1.08997 * 110.36968 * 82.02287 * 13 12 11 43 43 H 0.97001 * 120.00132 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.18535 * 359.43061 * 24 23 4 45 45 H 1.07997 * 119.58242 * 179.69476 * 25 24 23 46 46 H 1.07993 * 119.47300 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.12963 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5721 1.2304 -0.0005 5 6 4.3248 2.5036 0.0000 6 8 5.5361 2.4934 0.0995 7 7 3.6676 3.6751 -0.1098 8 6 4.4131 4.9362 -0.1098 9 6 3.4311 6.1093 -0.1230 10 1 2.7176 6.0073 0.6947 11 6 2.6815 6.1511 -1.4713 12 6 2.5815 7.6719 -1.7686 13 6 3.9270 8.1876 -1.1998 14 7 4.1644 7.3768 0.0083 15 6 4.9391 7.7437 1.0762 16 1 4.9364 7.1462 1.9759 17 6 5.7282 8.8833 1.0023 18 7 5.7320 9.6111 -0.0945 19 14 6.7856 9.3833 2.4587 20 1 7.7514 8.2977 2.7651 21 1 7.5276 10.6265 2.1281 22 1 5.9190 9.6231 3.6404 23 6 4.2445 -0.0184 -0.0069 24 6 5.6434 -0.0933 -0.0007 25 6 6.2529 -1.3120 -0.0020 26 6 5.5023 -2.4860 -0.0027 27 6 4.1422 -2.4494 -0.0017 28 6 3.4773 -1.2093 -0.0004 29 7 2.1432 -1.1447 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5138 33 1 1.6317 2.1461 0.0004 34 1 2.7008 3.6832 -0.1888 35 1 5.0473 4.9833 -0.9951 36 1 5.0333 4.9916 0.7849 37 1 3.2556 5.6452 -2.2476 38 1 1.6893 5.7103 -1.3749 39 1 1.7380 8.1176 -1.2413 40 1 2.5132 7.8587 -2.8402 41 1 3.8489 9.2431 -0.9390 42 1 4.7281 8.0345 -1.9229 43 1 6.2831 10.4077 -0.1460 44 1 6.2356 0.8098 -0.0002 45 1 7.3314 -1.3687 -0.0022 46 1 6.0082 -3.4401 -0.0033 47 1 3.5751 -3.3685 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028303194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:57 Heat of formation + Delta-G solvation = 26.304521 kcal Electronic energy + Delta-G solvation = -28693.819740 eV Core-core repulsion = 24841.192618 eV Total energy + Delta-G solvation = -3852.627122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.23612 -40.59662 -39.26877 -38.38822 -35.95946 -34.63167 -34.35380 -32.97873 -31.64656 -31.18735 -30.13995 -28.69637 -26.86177 -26.19375 -25.13471 -23.75721 -23.44821 -22.12421 -21.60011 -21.09608 -19.11466 -18.91792 -18.45796 -18.32846 -17.33163 -16.64746 -16.55557 -16.44516 -16.07392 -15.78884 -15.70231 -15.55877 -15.29242 -14.68887 -14.53745 -14.22026 -14.06398 -13.96502 -13.87860 -13.62811 -13.45162 -13.06223 -13.05455 -12.90345 -12.68388 -12.59892 -12.35796 -12.30359 -12.07522 -11.85385 -11.70034 -11.59274 -11.45139 -11.42394 -11.40252 -10.70886 -10.39323 -10.25539 -9.72771 -9.29045 -8.90738 -7.86252 -5.24769 -0.99127 -0.26889 0.63578 1.43610 1.46638 1.52198 1.66031 1.87673 2.04225 2.48172 3.03678 3.14295 3.29553 3.32424 3.55451 3.64435 3.75178 3.81700 3.93953 3.97388 4.13471 4.15965 4.26078 4.36928 4.40116 4.42606 4.45749 4.54397 4.67964 4.71979 4.85405 4.89007 4.91303 4.99357 5.02794 5.05344 5.13987 5.17525 5.23685 5.29683 5.36960 5.47525 5.48484 5.52526 5.57033 5.68691 5.80324 5.86590 6.23927 6.38010 6.80054 7.04554 7.08835 7.76158 8.39569 9.21495 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.002720 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.781935 B =10290.181811 C =11550.522242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.148 3.852 3 C -0.119 4.119 4 C -0.086 4.086 5 C 0.552 3.448 6 O -0.566 6.566 7 N -0.692 5.692 8 C 0.127 3.873 9 C 0.148 3.852 10 H 0.054 0.946 11 C -0.115 4.115 12 C -0.133 4.133 13 C 0.166 3.834 14 N -0.611 5.611 15 C -0.238 4.238 16 H 0.077 0.923 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.971 3.029 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.274 1.274 23 C -0.094 4.094 24 C -0.130 4.130 25 C -0.117 4.117 26 C -0.090 4.090 27 C -0.106 4.106 28 C 0.109 3.891 29 N -0.475 5.475 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.178 0.822 34 H 0.416 0.584 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.048 0.952 42 H -0.013 1.013 43 H 0.247 0.753 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.166 0.834 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.376 -22.735 -2.561 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.005 4.005 3 C -0.139 4.139 4 C -0.097 4.097 5 C 0.340 3.660 6 O -0.447 6.447 7 N -0.344 5.344 8 C 0.001 3.999 9 C 0.041 3.959 10 H 0.072 0.928 11 C -0.153 4.153 12 C -0.171 4.171 13 C 0.041 3.959 14 N -0.335 5.335 15 C -0.367 4.367 16 H 0.095 0.905 17 C -0.254 4.254 18 N -0.594 5.594 19 Si 0.799 3.201 20 H -0.211 1.211 21 H -0.219 1.219 22 H -0.200 1.200 23 C -0.096 4.096 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.012 4.012 29 N -0.186 5.186 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.195 0.805 34 H 0.255 0.745 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.005 0.995 43 H 0.057 0.943 44 H 0.161 0.839 45 H 0.166 0.834 46 H 0.184 0.816 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.769 -23.338 -2.434 26.251 hybrid contribution 1.572 1.617 0.676 2.355 sum -10.197 -21.721 -1.757 24.060 Atomic orbital electron populations 1.20939 0.85010 1.05244 1.04863 1.22092 0.99155 0.86995 0.92281 1.22654 0.92271 1.01547 0.97464 1.20317 0.94876 0.92171 1.02315 1.18452 0.86907 0.84197 0.76457 1.90606 1.15538 1.87130 1.51424 1.45717 1.11580 1.04644 1.72487 1.21834 0.95588 0.82433 1.00045 1.21345 0.92133 0.84474 0.97975 0.92815 1.22676 1.01041 0.96678 0.94913 1.22885 0.97426 0.95947 1.00869 1.21428 0.92372 0.95797 0.86290 1.44758 1.56099 1.14405 1.18234 1.19279 1.17362 1.07331 0.92771 0.90526 1.25587 1.01027 0.98887 0.99904 1.70128 1.43684 1.17843 1.27776 0.85270 0.78750 0.76919 0.79135 1.21055 1.21912 1.19952 1.18877 0.95469 0.92872 1.02412 1.22000 0.93764 1.00856 0.98202 1.21413 1.01815 0.91864 0.98345 1.21348 0.93423 0.99721 0.96496 1.21085 0.94913 0.95966 1.00507 1.19147 0.89229 0.93380 0.99464 1.67705 1.08501 1.29889 1.12461 0.88356 0.90060 0.87737 0.80490 0.74528 0.93942 0.94265 0.91503 0.87257 0.91110 0.89935 0.93323 0.99488 0.94335 0.83879 0.83443 0.81607 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.14 71.24 0.72 -0.24 16 2 C 0.15 2.67 6.78 42.95 0.29 2.97 16 3 C -0.12 -2.19 9.21 22.68 0.21 -1.98 16 4 C -0.09 -2.27 5.94 -19.68 -0.12 -2.39 16 5 C 0.55 17.48 7.75 86.80 0.67 18.16 16 6 O -0.57 -22.60 13.52 -3.86 -0.05 -22.66 16 7 N -0.69 -19.13 5.37 -465.93 -2.50 -21.63 16 8 C 0.13 4.71 5.11 86.38 0.44 5.15 16 9 C 0.15 5.38 3.21 45.34 0.15 5.52 16 10 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 11 C -0.12 -3.22 6.12 31.82 0.19 -3.02 16 12 C -0.13 -4.37 7.10 32.03 0.23 -4.14 16 13 C 0.17 7.89 5.54 86.86 0.48 8.37 16 14 N -0.61 -29.90 3.13 -668.26 -2.09 -31.99 16 15 C -0.24 -13.13 9.73 84.03 0.82 -12.31 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 17 C -0.06 -3.44 5.48 84.86 0.46 -2.98 16 18 N -0.95 -56.47 10.36 21.65 0.22 -56.25 16 19 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 C -0.09 -2.65 5.76 -21.09 -0.12 -2.77 16 24 C -0.13 -3.71 9.25 22.26 0.21 -3.51 16 25 C -0.12 -2.48 9.96 22.08 0.22 -2.26 16 26 C -0.09 -1.54 9.94 22.03 0.22 -1.32 16 27 C -0.11 -2.10 9.98 22.37 0.22 -1.88 16 28 C 0.11 2.74 6.61 40.33 0.27 3.00 16 29 N -0.48 -10.94 10.19 -176.84 -1.80 -12.74 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.48 8.07 -2.39 -0.02 0.47 16 33 H 0.18 1.82 6.55 -2.91 -0.02 1.80 16 34 H 0.42 7.86 6.45 -92.71 -0.60 7.26 16 35 H 0.04 1.76 8.01 -2.39 -0.02 1.75 16 36 H 0.04 1.73 7.83 -2.38 -0.02 1.71 16 37 H 0.07 1.86 7.76 -2.39 -0.02 1.84 16 38 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 2.64 6.51 -2.38 -0.02 2.63 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.14 4.83 4.98 -2.91 -0.01 4.82 16 45 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 46 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 47 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -76.85 380.51 1.77 -75.08 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.40 Total: 17.55 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.56 Total: 4.37 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.17 Total: -122.60 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -76.85 1.77 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028303194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.389 kcal (2) G-P(sol) polarization free energy of solvation -76.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds