Wall clock time and date at job start Tue Mar 31 2020 22:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36614 * 120.92229 * 2 1 4 4 C 1.39268 * 119.90538 * 179.69594 * 3 2 1 5 5 N 1.31139 * 121.77380 * 0.25962 * 4 3 2 6 6 C 1.33620 * 121.39119 * 0.02562 * 5 4 3 7 7 C 1.40763 * 120.83742 * 179.97438 * 6 5 4 8 8 C 1.35695 * 120.11095 * 180.02562 * 7 6 5 9 9 C 1.40632 * 120.93241 * 359.95803 * 8 7 6 10 10 C 1.47767 * 119.80522 * 180.02562 * 9 8 7 11 11 O 1.21563 * 119.99524 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99933 * 359.97438 * 10 9 8 13 13 C 1.46497 * 119.99728 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47027 * 179.97438 * 13 12 10 15 15 H 1.09008 * 110.63675 * 305.69588 * 14 13 12 16 16 C 1.55160 * 110.72016 * 182.55867 * 14 13 12 17 17 C 1.54907 * 101.57872 * 206.13059 * 16 14 13 18 18 N 1.47423 * 104.83268 * 37.00847 * 17 16 14 19 19 C 1.36945 * 125.64511 * 155.90131 * 18 17 16 20 20 H 1.07988 * 120.00186 * 342.05189 * 19 18 17 21 21 C 1.38809 * 119.99491 * 162.05314 * 19 18 17 22 22 N 1.31622 * 120.00037 * 156.24593 * 21 19 18 23 23 Si 1.86806 * 120.00177 * 336.24229 * 21 19 18 24 24 H 1.48504 * 109.47069 * 84.67259 * 23 21 19 25 25 H 1.48504 * 109.47208 * 204.66970 * 23 21 19 26 26 H 1.48496 * 109.47085 * 324.67151 * 23 21 19 27 27 C 1.47320 * 108.73689 * 335.71347 * 18 17 16 28 28 C 1.38548 * 120.38956 * 0.02562 * 9 8 7 29 29 C 1.40185 * 119.40335 * 0.02562 * 28 9 8 30 30 H 1.08994 * 109.47321 * 89.99785 * 1 2 3 31 31 H 1.08998 * 109.47396 * 210.00292 * 1 2 3 32 32 H 1.09004 * 109.46705 * 330.00051 * 1 2 3 33 33 H 1.08002 * 120.04632 * 359.97184 * 3 2 1 34 34 H 1.08000 * 119.11283 * 180.27013 * 4 3 2 35 35 H 1.07996 * 119.94373 * 0.02659 * 7 6 5 36 36 H 1.08007 * 119.53153 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00272 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46935 * 299.99534 * 13 12 10 39 39 H 1.08994 * 109.47676 * 59.99473 * 13 12 10 40 40 H 1.08999 * 111.00064 * 324.20275 * 16 14 13 41 41 H 1.08998 * 111.00369 * 88.01922 * 16 14 13 42 42 H 1.09004 * 110.36239 * 155.84533 * 17 16 14 43 43 H 1.09001 * 110.36684 * 278.05504 * 17 16 14 44 44 H 0.96997 * 120.00179 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.06475 * 241.86965 * 27 18 17 46 46 H 1.08995 * 109.84644 * 120.61163 * 27 18 17 47 47 H 1.08004 * 120.29670 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1720 0.0000 4 6 3.6015 1.1473 0.0064 5 7 4.2722 0.0203 0.0075 6 6 3.6479 -1.1611 0.0019 7 6 4.3795 -2.3637 0.0026 8 6 3.7304 -3.5553 -0.0036 9 6 2.3252 -3.6131 -0.0099 10 6 1.6441 -4.9244 -0.0160 11 8 0.4297 -4.9784 -0.0209 12 7 2.3692 -6.0604 -0.0160 13 6 1.6939 -7.3604 -0.0226 14 6 2.7389 -8.4780 -0.0219 15 1 3.4393 -8.3496 -0.8472 16 6 2.0551 -9.8690 -0.0936 17 6 3.1156 -10.7721 0.5841 18 7 3.6785 -9.9455 1.6673 19 6 4.2834 -10.4195 2.8009 20 1 4.1308 -11.4441 3.1062 21 6 5.0925 -9.5829 3.5573 22 7 5.2926 -9.8380 4.8330 23 14 5.8974 -8.0951 2.7649 24 1 4.9453 -6.9555 2.7705 25 1 7.1160 -7.7258 3.5291 26 1 6.2709 -8.4212 1.3651 27 6 3.4871 -8.5250 1.3270 28 6 1.5759 -2.4478 -0.0104 29 6 2.2308 -1.2084 -0.0051 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6849 2.1163 -0.0005 34 1 4.1436 2.0813 0.0108 35 1 5.4591 -2.3379 0.0081 36 1 4.3010 -4.4724 -0.0034 37 1 3.3382 -6.0173 -0.0124 38 1 1.0666 -7.4485 0.8645 39 1 1.0742 -7.4435 -0.9154 40 1 1.1209 -9.8744 0.4680 41 1 1.8885 -10.1696 -1.1280 42 1 2.6461 -11.6663 0.9941 43 1 3.8927 -11.0458 -0.1295 44 1 5.8583 -9.2537 5.3615 45 1 4.4533 -8.0296 1.2324 46 1 2.8917 -8.0367 2.0984 47 1 0.4968 -2.4939 -0.0148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028565724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:32 Heat of formation + Delta-G solvation = 45.712655 kcal Electronic energy + Delta-G solvation = -28447.438245 eV Core-core repulsion = 24595.652723 eV Total energy + Delta-G solvation = -3851.785522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.33671 -39.85013 -38.10329 -36.95862 -35.13758 -34.76997 -32.64692 -31.34865 -30.69926 -30.27629 -28.77274 -28.23247 -26.08716 -24.68914 -23.97196 -23.41222 -21.46533 -21.17134 -20.33704 -20.23982 -18.50644 -18.11708 -16.99018 -16.95792 -16.31855 -16.18143 -15.72174 -15.24871 -14.85161 -14.64050 -14.61408 -14.35667 -13.95027 -13.88586 -13.54615 -13.50754 -13.33883 -13.18020 -12.88114 -12.85815 -12.51219 -12.09771 -12.06359 -11.85219 -11.75244 -11.58696 -11.33575 -10.99228 -10.75107 -10.60578 -10.56225 -10.26515 -10.02293 -9.90019 -9.84551 -9.37838 -9.23023 -9.03825 -8.65391 -8.54105 -7.09447 -5.97273 -3.25695 -0.11027 0.33234 1.55850 2.15275 3.04827 3.13957 3.28491 3.40875 3.46617 3.78217 3.90211 4.10996 4.22137 4.37387 4.47719 4.51551 4.66724 4.73288 4.75466 4.87853 4.98027 4.99286 5.03874 5.08281 5.11360 5.21604 5.29831 5.41454 5.52247 5.57755 5.59423 5.62953 5.69060 5.77248 5.82813 5.92847 5.97243 6.01424 6.04987 6.14796 6.23879 6.30888 6.40380 6.44160 6.56506 6.70254 6.75970 7.40636 7.54737 7.68479 8.09224 8.29121 8.81083 9.66669 10.15360 11.19356 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.002770 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.230904 B =10105.879923 C =11365.309448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.187 4.187 4 C 0.143 3.857 5 N -0.482 5.482 6 C 0.147 3.853 7 C -0.096 4.096 8 C -0.075 4.075 9 C -0.131 4.131 10 C 0.558 3.442 11 O -0.539 6.539 12 N -0.720 5.720 13 C 0.132 3.868 14 C -0.117 4.117 15 H 0.081 0.919 16 C -0.121 4.121 17 C 0.132 3.868 18 N -0.610 5.610 19 C -0.243 4.243 20 H 0.093 0.907 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 0.885 3.115 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.280 1.280 27 C 0.124 3.876 28 C -0.027 4.027 29 C -0.114 4.114 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.401 0.599 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.025 0.975 44 H 0.263 0.737 45 H 0.023 0.977 46 H 0.043 0.957 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 20.939 -14.187 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.019 4.019 3 C -0.207 4.207 4 C -0.028 4.028 5 N -0.190 5.190 6 C 0.026 3.974 7 C -0.115 4.115 8 C -0.095 4.095 9 C -0.135 4.135 10 C 0.345 3.655 11 O -0.418 6.418 12 N -0.371 5.371 13 C 0.009 3.991 14 C -0.137 4.137 15 H 0.099 0.901 16 C -0.160 4.160 17 C 0.007 3.993 18 N -0.337 5.337 19 C -0.370 4.370 20 H 0.111 0.889 21 C -0.178 4.178 22 N -0.550 5.550 23 Si 0.717 3.283 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.207 1.207 27 C -0.001 4.001 28 C -0.047 4.047 29 C -0.116 4.116 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.178 0.822 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.237 0.763 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.041 0.959 46 H 0.061 0.939 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.623 20.737 -13.934 26.120 hybrid contribution 0.396 0.945 -0.280 1.063 sum -7.226 21.683 -14.214 26.914 Atomic orbital electron populations 1.20956 0.89658 1.04078 1.03507 1.20262 0.96855 0.91965 0.92829 1.21773 0.95624 0.98812 1.04501 1.23013 0.91538 0.96497 0.91801 1.68082 1.39892 0.97700 1.13353 1.18996 0.89545 0.92586 0.96273 1.20702 1.00783 0.89687 1.00320 1.21015 0.93119 0.98649 0.96714 1.19973 0.93757 0.93728 1.05991 1.18128 0.86921 0.83853 0.76583 1.90765 1.13268 1.87559 1.50197 1.45990 1.10606 1.06026 1.74476 1.21474 0.94845 0.80189 1.02624 1.22476 0.97162 0.94798 0.99227 0.90112 1.22727 0.99098 0.93753 1.00384 1.21615 0.93481 0.94149 0.90071 1.44859 1.68849 0.99592 1.20390 1.18674 1.22556 0.99017 0.96720 0.88917 1.24966 0.99311 0.98015 0.95533 1.69857 1.40314 1.39882 1.04927 0.86907 0.79034 0.83611 0.78725 1.21311 1.23175 1.20672 1.21767 0.96621 0.88292 0.93427 1.21457 1.00746 0.89630 0.92823 1.18677 0.94113 0.93981 1.04844 0.89818 0.90266 0.90369 0.84323 0.82195 0.83930 0.84810 0.76330 0.90666 0.91057 0.90839 0.91184 0.93117 0.95756 0.92701 0.95941 0.93898 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 9.58 36.01 0.35 -0.42 16 2 C -0.01 -0.10 5.92 -104.22 -0.62 -0.71 16 3 C -0.19 -1.36 9.72 -39.79 -0.39 -1.75 16 4 C 0.14 1.20 11.14 -17.46 -0.19 1.01 16 5 N -0.48 -5.55 10.33 -10.92 -0.11 -5.67 16 6 C 0.15 1.78 6.61 -84.78 -0.56 1.22 16 7 C -0.10 -1.10 9.95 -39.54 -0.39 -1.49 16 8 C -0.07 -0.85 9.44 -39.59 -0.37 -1.23 16 9 C -0.13 -1.67 5.87 -104.98 -0.62 -2.28 16 10 C 0.56 8.12 7.77 -12.37 -0.10 8.03 16 11 O -0.54 -9.22 16.31 5.31 0.09 -9.13 16 12 N -0.72 -9.92 5.38 -61.28 -0.33 -10.25 16 13 C 0.13 1.87 5.00 -4.04 -0.02 1.85 16 14 C -0.12 -1.81 2.98 -88.79 -0.26 -2.07 16 15 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 16 C -0.12 -1.79 6.54 -24.58 -0.16 -1.95 16 17 C 0.13 2.50 7.23 -2.53 -0.02 2.48 16 18 N -0.61 -14.54 3.22 -169.84 -0.55 -15.08 16 19 C -0.24 -6.88 10.57 -15.06 -0.16 -7.04 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 21 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 22 N -0.91 -28.07 13.97 55.49 0.78 -27.30 16 23 Si 0.89 22.39 24.39 -169.99 -4.15 18.24 16 24 H -0.29 -6.87 6.84 56.52 0.39 -6.49 16 25 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 26 H -0.28 -6.88 6.87 56.52 0.39 -6.50 16 27 C 0.12 2.59 4.55 -2.90 -0.01 2.57 16 28 C -0.03 -0.31 8.88 -38.74 -0.34 -0.66 16 29 C -0.11 -1.28 5.74 -106.82 -0.61 -1.89 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.52 6.53 -51.93 -0.34 0.18 16 32 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.13 1.31 6.35 -52.48 -0.33 0.98 16 37 H 0.40 5.01 6.39 -40.82 -0.26 4.74 16 38 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.07 8.05 -51.93 -0.42 0.66 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.02 0.51 3.55 -51.93 -0.18 0.32 16 46 H 0.04 0.97 7.73 -51.93 -0.40 0.56 16 47 H 0.15 1.59 6.01 -52.48 -0.32 1.27 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -35.21 377.41 -9.65 -44.86 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.48 Total: 2.47 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.58 Total: -3.83 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.21 Total: -58.30 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.15 Total: 18.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.21 -9.65 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028565724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.570 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds