Wall clock time and date at job start Tue Mar 31 2020 22:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36614 * 120.92229 * 2 1 4 4 C 1.39268 * 119.90538 * 179.69594 * 3 2 1 5 5 N 1.31139 * 121.77380 * 0.25962 * 4 3 2 6 6 C 1.33620 * 121.39119 * 0.02562 * 5 4 3 7 7 C 1.40763 * 120.83742 * 179.97438 * 6 5 4 8 8 C 1.35695 * 120.11095 * 180.02562 * 7 6 5 9 9 C 1.40632 * 120.93241 * 359.95803 * 8 7 6 10 10 C 1.47767 * 119.80522 * 180.02562 * 9 8 7 11 11 O 1.21563 * 119.99524 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99933 * 359.97438 * 10 9 8 13 13 C 1.46497 * 119.99728 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47027 * 179.97438 * 13 12 10 15 15 H 1.09008 * 110.63675 * 305.69588 * 14 13 12 16 16 C 1.55160 * 110.72016 * 182.55867 * 14 13 12 17 17 C 1.54907 * 101.57872 * 206.13059 * 16 14 13 18 18 N 1.47423 * 104.83268 * 37.00847 * 17 16 14 19 19 C 1.36945 * 125.64511 * 155.90131 * 18 17 16 20 20 H 1.07988 * 120.00186 * 342.05189 * 19 18 17 21 21 C 1.38809 * 119.99491 * 162.05314 * 19 18 17 22 22 N 1.31622 * 120.00037 * 156.24593 * 21 19 18 23 23 Si 1.86806 * 120.00177 * 336.24229 * 21 19 18 24 24 H 1.48504 * 109.47069 * 84.67259 * 23 21 19 25 25 H 1.48504 * 109.47208 * 204.66970 * 23 21 19 26 26 H 1.48496 * 109.47085 * 324.67151 * 23 21 19 27 27 C 1.47320 * 108.73689 * 335.71347 * 18 17 16 28 28 C 1.38548 * 120.38956 * 0.02562 * 9 8 7 29 29 C 1.40185 * 119.40335 * 0.02562 * 28 9 8 30 30 H 1.08994 * 109.47321 * 89.99785 * 1 2 3 31 31 H 1.08998 * 109.47396 * 210.00292 * 1 2 3 32 32 H 1.09004 * 109.46705 * 330.00051 * 1 2 3 33 33 H 1.08002 * 120.04632 * 359.97184 * 3 2 1 34 34 H 1.08000 * 119.11283 * 180.27013 * 4 3 2 35 35 H 1.07996 * 119.94373 * 0.02659 * 7 6 5 36 36 H 1.08007 * 119.53153 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00272 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46935 * 299.99534 * 13 12 10 39 39 H 1.08994 * 109.47676 * 59.99473 * 13 12 10 40 40 H 1.08999 * 111.00064 * 324.20275 * 16 14 13 41 41 H 1.08998 * 111.00369 * 88.01922 * 16 14 13 42 42 H 1.09004 * 110.36239 * 155.84533 * 17 16 14 43 43 H 1.09001 * 110.36684 * 278.05504 * 17 16 14 44 44 H 0.96997 * 120.00179 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.06475 * 241.86965 * 27 18 17 46 46 H 1.08995 * 109.84644 * 120.61163 * 27 18 17 47 47 H 1.08004 * 120.29670 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1720 0.0000 4 6 3.6015 1.1473 0.0064 5 7 4.2722 0.0203 0.0075 6 6 3.6479 -1.1611 0.0019 7 6 4.3795 -2.3637 0.0026 8 6 3.7304 -3.5553 -0.0036 9 6 2.3252 -3.6131 -0.0099 10 6 1.6441 -4.9244 -0.0160 11 8 0.4297 -4.9784 -0.0209 12 7 2.3692 -6.0604 -0.0160 13 6 1.6939 -7.3604 -0.0226 14 6 2.7389 -8.4780 -0.0219 15 1 3.4393 -8.3496 -0.8472 16 6 2.0551 -9.8690 -0.0936 17 6 3.1156 -10.7721 0.5841 18 7 3.6785 -9.9455 1.6673 19 6 4.2834 -10.4195 2.8009 20 1 4.1308 -11.4441 3.1062 21 6 5.0925 -9.5829 3.5573 22 7 5.2926 -9.8380 4.8330 23 14 5.8974 -8.0951 2.7649 24 1 4.9453 -6.9555 2.7705 25 1 7.1160 -7.7258 3.5291 26 1 6.2709 -8.4212 1.3651 27 6 3.4871 -8.5250 1.3270 28 6 1.5759 -2.4478 -0.0104 29 6 2.2308 -1.2084 -0.0051 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6849 2.1163 -0.0005 34 1 4.1436 2.0813 0.0108 35 1 5.4591 -2.3379 0.0081 36 1 4.3010 -4.4724 -0.0034 37 1 3.3382 -6.0173 -0.0124 38 1 1.0666 -7.4485 0.8645 39 1 1.0742 -7.4435 -0.9154 40 1 1.1209 -9.8744 0.4680 41 1 1.8885 -10.1696 -1.1280 42 1 2.6461 -11.6663 0.9941 43 1 3.8927 -11.0458 -0.1295 44 1 5.8583 -9.2537 5.3615 45 1 4.4533 -8.0296 1.2324 46 1 2.8917 -8.0367 2.0984 47 1 0.4968 -2.4939 -0.0148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028565724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:30 Heat of formation + Delta-G solvation = 21.983001 kcal Electronic energy + Delta-G solvation = -28448.467240 eV Core-core repulsion = 24595.652723 eV Total energy + Delta-G solvation = -3852.814517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11084 -40.91352 -39.54326 -37.81429 -36.20482 -35.69511 -34.52552 -32.56799 -31.63594 -31.47307 -30.17290 -28.87822 -27.53293 -25.98649 -24.90204 -24.57695 -22.48928 -22.07651 -21.86081 -21.51602 -19.47607 -19.00162 -18.88779 -17.88506 -17.70968 -17.13257 -16.77570 -16.47390 -16.07076 -15.61128 -15.50166 -15.39989 -15.16030 -15.03098 -14.96689 -14.60866 -14.36298 -14.21962 -13.99927 -13.82159 -13.50534 -13.48572 -13.25361 -13.02163 -12.79723 -12.74528 -12.63328 -12.44367 -12.40950 -12.12166 -11.85252 -11.60283 -11.25319 -11.24976 -11.15066 -10.77345 -10.55569 -10.27225 -9.89436 -9.33159 -9.08838 -8.20879 -5.45273 -0.88718 -0.42452 0.78414 1.24969 1.30697 1.34812 1.45919 2.00426 2.20723 2.39297 2.99173 2.99491 3.20337 3.29887 3.42127 3.50320 3.59070 3.69625 3.76035 3.80417 3.85798 3.90831 3.96548 4.19487 4.35667 4.41714 4.45899 4.47162 4.54244 4.63128 4.69484 4.70896 4.74890 4.81344 4.84776 4.87667 4.95613 5.02619 5.09213 5.10052 5.11230 5.16156 5.26383 5.31392 5.43648 5.45706 5.67205 5.70582 6.07795 6.34698 6.74774 6.84514 7.01301 7.52529 8.08987 8.99469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.002770 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.230904 B =10105.879923 C =11365.309448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.019 4.019 3 C -0.179 4.179 4 C 0.145 3.855 5 N -0.514 5.514 6 C 0.130 3.870 7 C -0.106 4.106 8 C -0.077 4.077 9 C -0.152 4.152 10 C 0.559 3.441 11 O -0.571 6.571 12 N -0.717 5.717 13 C 0.138 3.862 14 C -0.100 4.100 15 H 0.107 0.893 16 C -0.106 4.106 17 C 0.122 3.878 18 N -0.631 5.631 19 C -0.237 4.237 20 H 0.059 0.941 21 C -0.044 4.044 22 N -0.957 5.957 23 Si 0.952 3.048 24 H -0.270 1.270 25 H -0.312 1.312 26 H -0.264 1.264 27 C 0.117 3.883 28 C -0.024 4.024 29 C -0.132 4.132 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.177 0.823 34 H 0.194 0.806 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.408 0.592 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.261 0.739 45 H 0.018 0.982 46 H 0.020 0.980 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 23.786 -16.971 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.026 4.026 5 N -0.224 5.224 6 C 0.008 3.992 7 C -0.125 4.125 8 C -0.097 4.097 9 C -0.155 4.155 10 C 0.348 3.652 11 O -0.452 6.452 12 N -0.369 5.369 13 C 0.015 3.985 14 C -0.119 4.119 15 H 0.125 0.875 16 C -0.145 4.145 17 C -0.002 4.002 18 N -0.358 5.358 19 C -0.365 4.365 20 H 0.077 0.923 21 C -0.238 4.238 22 N -0.604 5.604 23 Si 0.781 3.219 24 H -0.196 1.196 25 H -0.241 1.241 26 H -0.190 1.190 27 C -0.007 4.007 28 C -0.044 4.044 29 C -0.134 4.134 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.194 0.806 34 H 0.211 0.789 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.245 0.755 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.038 0.962 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.368 23.579 -16.773 30.122 hybrid contribution 0.551 0.105 0.606 0.826 sum -7.816 23.683 -16.167 29.722 Atomic orbital electron populations 1.21022 0.87879 1.04758 1.04383 1.20634 0.98233 0.91546 0.92326 1.22192 0.95280 0.99861 1.02481 1.23711 0.92569 0.96801 0.89566 1.68120 1.40785 0.98296 1.15165 1.19237 0.90135 0.93173 0.96618 1.20875 1.01323 0.89758 1.00523 1.21097 0.92664 0.99255 0.96714 1.19906 0.94363 0.93035 1.08160 1.18378 0.86575 0.84532 0.75750 1.90738 1.14554 1.88036 1.51900 1.45971 1.10999 1.05787 1.74096 1.21383 0.94393 0.79954 1.02798 1.22404 0.97329 0.95630 0.96574 0.87482 1.22704 0.97409 0.91954 1.02405 1.21888 0.94769 0.94421 0.89155 1.45011 1.68429 1.01855 1.20496 1.18639 1.22038 0.97689 0.98163 0.92328 1.25677 1.00453 1.01865 0.95827 1.69998 1.41901 1.41999 1.06499 0.85844 0.77586 0.80375 0.78055 1.19587 1.24100 1.18972 1.21874 0.96648 0.86243 0.95945 1.21574 1.00923 0.89826 0.92062 1.18878 0.94178 0.94763 1.05585 0.88725 0.91146 0.88138 0.80553 0.78916 0.83061 0.83544 0.75513 0.92537 0.88881 0.90794 0.86813 0.93681 0.94500 0.92971 0.96492 0.96209 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.58 71.24 0.68 -0.53 16 2 C -0.02 -0.30 5.92 -19.60 -0.12 -0.41 16 3 C -0.18 -2.01 9.72 22.14 0.22 -1.80 16 4 C 0.14 2.04 11.14 85.04 0.95 2.98 16 5 N -0.51 -11.16 10.33 -188.47 -1.95 -13.11 16 6 C 0.13 3.04 6.61 40.37 0.27 3.31 16 7 C -0.11 -2.38 9.95 22.30 0.22 -2.16 16 8 C -0.08 -1.71 9.44 22.27 0.21 -1.50 16 9 C -0.15 -3.79 5.87 -20.10 -0.12 -3.90 16 10 C 0.56 15.89 7.77 86.76 0.67 16.57 16 11 O -0.57 -19.33 16.31 -3.91 -0.06 -19.39 16 12 N -0.72 -18.59 5.38 -466.06 -2.51 -21.10 16 13 C 0.14 3.60 5.00 86.38 0.43 4.03 16 14 C -0.10 -2.78 2.98 -9.61 -0.03 -2.81 16 15 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 16 C -0.11 -2.78 6.54 31.99 0.21 -2.57 16 17 C 0.12 4.40 7.23 86.85 0.63 5.03 16 18 N -0.63 -29.88 3.22 -691.27 -2.22 -32.10 16 19 C -0.24 -13.79 10.57 84.03 0.89 -12.91 16 20 H 0.06 3.70 8.06 -2.92 -0.02 3.68 16 21 C -0.04 -2.63 5.43 84.86 0.46 -2.17 16 22 N -0.96 -61.66 13.97 21.65 0.30 -61.35 16 23 Si 0.95 46.95 24.39 68.60 1.67 48.62 16 24 H -0.27 -12.42 6.84 99.48 0.68 -11.74 16 25 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 26 H -0.26 -12.20 6.87 99.48 0.68 -11.51 16 27 C 0.12 4.74 4.55 86.67 0.39 5.14 16 28 C -0.02 -0.56 8.88 22.82 0.20 -0.36 16 29 C -0.13 -2.84 5.74 -21.29 -0.12 -2.96 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.83 6.53 -2.39 -0.02 0.81 16 32 H 0.10 0.53 8.10 -2.38 -0.02 0.51 16 33 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 34 H 0.19 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.15 2.70 6.35 -2.91 -0.02 2.68 16 37 H 0.41 9.35 6.39 -92.71 -0.59 8.76 16 38 H 0.06 1.71 8.01 -2.39 -0.02 1.69 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 41 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 45 H 0.02 0.73 3.55 -2.39 -0.01 0.73 16 46 H 0.02 0.89 7.73 -2.39 -0.02 0.87 16 47 H 0.15 3.23 6.01 -2.91 -0.02 3.21 16 Total: -1.00 -80.31 377.41 1.64 -78.66 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.36 Total: 16.79 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.05 Total: 2.98 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -6.38 Total: -127.67 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.06 Total: -19.39 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.67 Total: 48.62 kcal Total: -80.31 1.64 -78.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028565724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.647 kcal (2) G-P(sol) polarization free energy of solvation -80.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds