Wall clock time and date at job start Tue Mar 31 2020 22:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36614 * 120.92118 * 2 1 4 4 C 1.39282 * 119.90690 * 180.02562 * 3 2 1 5 5 N 1.31137 * 121.76971 * 0.02562 * 4 3 2 6 6 C 1.33624 * 121.39069 * 359.96482 * 5 4 3 7 7 C 1.40770 * 120.82585 * 180.02562 * 6 5 4 8 8 C 1.35700 * 120.10833 * 179.97438 * 7 6 5 9 9 C 1.40630 * 120.92515 * 0.04050 * 8 7 6 10 10 C 1.47770 * 119.80247 * 179.97438 * 9 8 7 11 11 O 1.21561 * 120.00065 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99443 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99638 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47097 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.63669 * 51.85851 * 14 13 12 16 16 C 1.55156 * 110.71830 * 174.99627 * 14 13 12 17 17 C 1.54906 * 101.61451 * 154.02508 * 16 14 13 18 18 N 1.47471 * 104.81210 * 323.04512 * 17 16 14 19 19 C 1.36937 * 125.62509 * 204.14198 * 18 17 16 20 20 H 1.08004 * 119.99479 * 179.91598 * 19 18 17 21 21 C 1.38806 * 120.00537 * 359.91425 * 19 18 17 22 22 N 1.31628 * 120.00035 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00199 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47139 * 59.99880 * 23 21 19 25 25 H 1.48502 * 109.47021 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46988 * 299.99649 * 23 21 19 27 27 C 1.47017 * 108.71970 * 24.07007 * 18 17 16 28 28 C 1.38547 * 120.39837 * 0.23532 * 9 8 7 29 29 C 1.40197 * 119.40051 * 359.47630 * 28 9 8 30 30 H 1.09000 * 109.47678 * 269.98557 * 1 2 3 31 31 H 1.09000 * 109.47338 * 29.98143 * 1 2 3 32 32 H 1.09000 * 109.47378 * 149.98286 * 1 2 3 33 33 H 1.07996 * 120.04902 * 0.03233 * 3 2 1 34 34 H 1.07998 * 119.11389 * 180.02562 * 4 3 2 35 35 H 1.08001 * 119.94628 * 0.02562 * 7 6 5 36 36 H 1.07993 * 119.53439 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00552 * 359.97438 * 12 10 9 38 38 H 1.09006 * 109.47066 * 59.99373 * 13 12 10 39 39 H 1.09000 * 109.47236 * 299.99784 * 13 12 10 40 40 H 1.09002 * 111.00677 * 272.12092 * 16 14 13 41 41 H 1.09002 * 111.00564 * 35.93350 * 16 14 13 42 42 H 1.09008 * 110.36753 * 81.85112 * 17 16 14 43 43 H 1.09001 * 110.37094 * 204.16995 * 17 16 14 44 44 H 0.96994 * 120.00079 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.88206 * 239.55467 * 27 18 17 46 46 H 1.09007 * 109.88177 * 118.39340 * 27 18 17 47 47 H 1.08005 * 120.30182 * 179.71983 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0204 -0.0016 6 6 3.6478 -1.1610 -0.0014 7 6 4.3796 -2.3636 -0.0020 8 6 3.7306 -3.5554 -0.0013 9 6 2.3255 -3.6131 -0.0009 10 6 1.6443 -4.9245 -0.0007 11 8 0.4299 -4.9786 -0.0009 12 7 2.3696 -6.0604 -0.0005 13 6 1.6943 -7.3606 0.0003 14 6 2.7394 -8.4780 -0.0002 15 1 3.4625 -8.3281 0.8016 16 6 2.0585 -9.8664 0.1271 17 6 3.1014 -10.7887 -0.5521 18 7 3.6373 -9.9918 -1.6713 19 6 4.2125 -10.4970 -2.8066 20 1 4.5747 -9.8271 -3.5725 21 6 4.3302 -11.8700 -2.9732 22 7 3.8893 -12.6865 -2.0396 23 14 5.1156 -12.5591 -4.5217 24 1 6.5111 -12.0635 -4.6316 25 1 5.1215 -14.0427 -4.4556 26 1 4.3390 -12.1191 -5.7085 27 6 3.4501 -8.5656 -1.3671 28 6 1.5759 -2.4479 -0.0061 29 6 2.2307 -1.2083 -0.0006 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6849 2.1163 0.0005 34 1 4.1436 2.0814 -0.0001 35 1 5.4593 -2.3377 -0.0021 36 1 4.3012 -4.4722 -0.0013 37 1 3.3386 -6.0172 -0.0007 38 1 1.0705 -7.4465 -0.8895 39 1 1.0711 -7.4458 0.8904 40 1 1.9187 -10.1386 1.1733 41 1 1.1101 -9.8872 -0.4098 42 1 3.8974 -11.0416 0.1484 43 1 2.6218 -11.6936 -0.9252 44 1 3.9713 -13.6459 -2.1561 45 1 2.8334 -8.1005 -2.1361 46 1 4.4184 -8.0677 -1.3141 47 1 0.4969 -2.4941 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028565727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:37 Heat of formation + Delta-G solvation = 39.139032 kcal Electronic energy + Delta-G solvation = -27885.319121 eV Core-core repulsion = 24033.248545 eV Total energy + Delta-G solvation = -3852.070576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.35515 -39.80879 -37.76834 -36.94543 -35.14296 -34.71565 -32.60810 -31.21728 -30.71885 -29.75856 -28.48835 -28.07263 -25.83375 -24.74484 -23.99406 -23.27201 -21.46285 -21.15657 -20.14967 -19.78600 -18.47673 -18.10865 -17.00991 -16.82580 -16.29421 -15.85667 -15.47517 -15.06592 -14.76789 -14.66563 -14.51902 -14.42091 -13.98109 -13.89827 -13.63411 -13.49562 -13.19488 -12.92324 -12.89673 -12.52228 -12.09496 -11.95769 -11.85923 -11.72633 -11.69593 -11.51045 -10.97096 -10.79704 -10.58554 -10.46796 -10.19336 -10.08227 -9.99152 -9.87555 -9.78522 -9.52921 -9.23864 -9.01108 -8.65756 -8.55976 -6.84770 -5.66393 -3.08172 -0.13045 0.30998 1.53662 2.13989 3.08848 3.13722 3.40047 3.44196 3.45519 3.76299 3.87849 4.08866 4.20056 4.35371 4.46635 4.50223 4.64847 4.71918 4.81313 4.96045 5.05431 5.09058 5.10371 5.22467 5.27888 5.37545 5.50424 5.51331 5.55985 5.60874 5.66666 5.68956 5.85729 5.90163 5.95858 6.04646 6.08916 6.12761 6.32666 6.35535 6.41000 6.53354 6.56684 6.69654 6.88464 7.45288 7.49850 7.52015 7.61241 7.84476 8.12566 8.35286 9.21054 9.81997 10.46636 11.37551 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002024 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.412428 B =13829.629120 C =14608.811424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.187 4.187 4 C 0.143 3.857 5 N -0.482 5.482 6 C 0.146 3.854 7 C -0.097 4.097 8 C -0.074 4.074 9 C -0.131 4.131 10 C 0.556 3.444 11 O -0.540 6.540 12 N -0.717 5.717 13 C 0.132 3.868 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.915 3.085 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.141 3.859 28 C -0.028 4.028 29 C -0.113 4.113 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.012 0.988 43 H 0.107 0.893 44 H 0.253 0.747 45 H 0.024 0.976 46 H 0.018 0.982 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 26.856 7.761 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.019 4.019 3 C -0.207 4.207 4 C -0.029 4.029 5 N -0.191 5.191 6 C 0.025 3.975 7 C -0.116 4.116 8 C -0.094 4.094 9 C -0.134 4.134 10 C 0.342 3.658 11 O -0.419 6.419 12 N -0.368 5.368 13 C 0.009 3.991 14 C -0.134 4.134 15 H 0.095 0.905 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.015 3.985 28 C -0.048 4.048 29 C -0.116 4.116 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.178 0.822 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.030 0.970 43 H 0.125 0.875 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.036 0.964 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.196 26.448 7.656 27.851 hybrid contribution 0.191 -0.257 -0.769 0.833 sum -4.006 26.190 6.887 27.375 Atomic orbital electron populations 1.20957 0.89671 1.04063 1.03542 1.20264 0.96858 0.91993 0.92813 1.21776 0.95630 0.98822 1.04500 1.23009 0.91531 0.96502 0.91827 1.68081 1.39891 0.97708 1.13388 1.19009 0.89550 0.92619 0.96350 1.20700 1.00722 0.89696 1.00436 1.21011 0.93050 0.98623 0.96712 1.20002 0.93798 0.93755 1.05836 1.18152 0.86957 0.83898 0.76756 1.90771 1.13381 1.87555 1.50207 1.46020 1.10538 1.06014 1.74267 1.21520 0.95108 0.80136 1.02351 1.22453 0.97033 0.94850 0.99114 0.90534 1.23009 1.00037 0.94254 1.00136 1.21947 0.92446 0.95137 0.87777 1.44504 1.70369 0.99120 1.19061 1.19027 1.31166 0.90491 0.94503 0.90595 1.24793 1.01561 0.95866 0.98480 1.69785 1.51833 1.02310 1.33190 0.86145 0.79018 0.77903 0.82384 1.21224 1.21553 1.21149 1.21335 0.96190 0.88254 0.92728 1.21474 1.00780 0.89678 0.92863 1.18675 0.94113 0.93964 1.04799 0.89801 0.90382 0.90266 0.84347 0.82217 0.83966 0.84628 0.76330 0.90965 0.91370 0.92088 0.91800 0.96974 0.87515 0.93663 0.95774 0.96409 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 9.60 36.00 0.35 -0.36 16 2 C -0.01 -0.09 5.92 -104.22 -0.62 -0.71 16 3 C -0.19 -1.25 9.72 -39.78 -0.39 -1.64 16 4 C 0.14 1.10 11.14 -17.46 -0.19 0.90 16 5 N -0.48 -5.11 10.33 -10.92 -0.11 -5.23 16 6 C 0.15 1.61 6.61 -84.78 -0.56 1.05 16 7 C -0.10 -0.97 9.95 -39.53 -0.39 -1.36 16 8 C -0.07 -0.72 9.44 -39.59 -0.37 -1.09 16 9 C -0.13 -1.51 5.87 -104.98 -0.62 -2.12 16 10 C 0.56 7.62 7.77 -12.36 -0.10 7.52 16 11 O -0.54 -9.09 16.31 5.31 0.09 -9.00 16 12 N -0.72 -9.11 5.42 -61.27 -0.33 -9.44 16 13 C 0.13 1.90 5.02 -4.04 -0.02 1.88 16 14 C -0.12 -1.87 2.95 -88.79 -0.26 -2.13 16 15 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 16 C -0.14 -2.46 6.53 -24.58 -0.16 -2.62 16 17 C 0.15 3.62 5.89 -2.50 -0.01 3.61 16 18 N -0.60 -15.32 3.40 -170.04 -0.58 -15.89 16 19 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 23 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.14 2.82 6.76 -3.07 -0.02 2.80 16 28 C -0.03 -0.31 8.89 -38.73 -0.34 -0.65 16 29 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.08 0.48 6.51 -51.93 -0.34 0.14 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 34 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 1.03 6.35 -52.49 -0.33 0.70 16 37 H 0.40 4.25 6.46 -40.82 -0.26 3.99 16 38 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 42 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 43 H 0.11 2.88 5.88 -51.93 -0.31 2.58 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.02 0.50 7.69 -51.93 -0.40 0.10 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.15 1.50 5.99 -52.48 -0.31 1.18 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -33.90 382.10 -10.78 -44.67 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.56 Total: 1.81 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -4.58 Total: -3.48 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.46 Total: -56.80 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.90 -10.78 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028565727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.814 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds