Wall clock time and date at job start Tue Mar 31 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30824 * 119.23056 * 2 1 4 4 C 1.33785 * 121.72259 * 179.97438 * 3 2 1 5 5 C 1.40532 * 120.82849 * 179.97438 * 4 3 2 6 6 C 1.36129 * 119.81306 * 180.02562 * 5 4 3 7 7 C 1.39346 * 121.09846 * 359.97438 * 6 5 4 8 8 C 1.36132 * 120.83569 * 0.04815 * 7 6 5 9 9 C 1.40555 * 119.61581 * 359.70115 * 8 7 6 10 10 C 1.40495 * 121.22060 * 179.73152 * 9 8 7 11 11 C 1.39050 * 117.96395 * 180.29202 * 10 9 8 12 12 C 1.47759 * 120.26917 * 180.27046 * 11 10 9 13 13 O 1.21562 * 119.99948 * 173.69129 * 12 11 10 14 14 N 1.34777 * 119.99835 * 353.69279 * 12 11 10 15 15 C 1.46504 * 120.00023 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47147 * 179.97438 * 15 14 12 17 17 H 1.09000 * 110.88978 * 51.11589 * 16 15 14 18 18 C 1.55159 * 111.00498 * 174.99689 * 16 15 14 19 19 C 1.54322 * 102.94795 * 153.57526 * 18 16 15 20 20 N 1.47031 * 107.26509 * 337.80683 * 19 18 16 21 21 C 1.36941 * 125.64425 * 178.91486 * 20 19 18 22 22 H 1.07999 * 119.99944 * 180.02562 * 21 20 19 23 23 C 1.38816 * 119.99990 * 0.03081 * 21 20 19 24 24 N 1.31614 * 119.99783 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99747 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47340 * 89.99907 * 25 23 21 27 27 H 1.48505 * 109.46852 * 210.00213 * 25 23 21 28 28 H 1.48505 * 109.47151 * 329.99740 * 25 23 21 29 29 C 1.47418 * 108.70330 * 358.94283 * 20 19 18 30 30 H 1.08999 * 109.47054 * 263.32921 * 1 2 3 31 31 H 1.08990 * 109.47240 * 23.33284 * 1 2 3 32 32 H 1.09000 * 109.46990 * 143.33899 * 1 2 3 33 33 H 1.07997 * 120.09002 * 0.04018 * 5 4 3 34 34 H 1.07999 * 119.45090 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.58075 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.19342 * 180.02562 * 8 7 6 37 37 H 1.08007 * 121.01761 * 0.56751 * 10 9 8 38 38 H 0.97000 * 120.00554 * 359.97438 * 14 12 11 39 39 H 1.09008 * 109.46423 * 299.99429 * 15 14 12 40 40 H 1.09000 * 109.47011 * 59.99230 * 15 14 12 41 41 H 1.09003 * 110.72247 * 271.94272 * 18 16 15 42 42 H 1.09007 * 110.72118 * 35.03479 * 18 16 15 43 43 H 1.08995 * 109.88426 * 97.22292 * 19 18 16 44 44 H 1.09001 * 109.88434 * 218.39292 * 19 18 16 45 45 H 0.97008 * 119.99598 * 180.02562 * 24 23 21 46 46 H 1.09003 * 110.36436 * 265.28207 * 29 20 19 47 47 H 1.09007 * 110.36604 * 142.96610 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1495 2.4368 0.0000 6 6 5.5103 2.4718 0.0000 7 6 6.2606 1.2976 0.0010 8 6 5.6512 0.0802 0.0011 9 6 4.2477 0.0060 0.0065 10 6 3.5839 -1.2322 0.0012 11 6 2.1934 -1.2266 0.0007 12 6 1.4434 -2.4997 0.0012 13 8 0.2333 -2.4923 0.1166 14 7 2.1011 -3.6692 -0.1261 15 6 1.3575 -4.9316 -0.1262 16 6 2.3340 -6.0987 -0.2843 17 1 3.1453 -6.0275 0.4402 18 6 1.5985 -7.4595 -0.1635 19 6 2.4930 -8.4103 -0.9865 20 7 3.2710 -7.5803 -1.9180 21 6 4.2009 -8.0410 -2.8115 22 1 4.7214 -7.3473 -3.4551 23 6 4.4745 -9.3997 -2.8900 24 7 3.8404 -10.2450 -2.1053 25 14 5.7425 -10.0281 -4.1092 26 1 7.0805 -10.0488 -3.4655 27 1 5.3782 -11.4024 -4.5381 28 1 5.7767 -9.1328 -5.2935 29 6 2.8846 -6.1701 -1.7304 30 1 -0.3633 -0.1194 1.0207 31 1 -0.3633 0.9435 -0.4070 32 1 -0.3633 -0.8244 -0.6136 33 1 3.5840 3.3569 -0.0002 34 1 6.0169 3.4256 -0.0009 35 1 7.3391 1.3540 0.0014 36 1 6.2429 -0.8233 0.0024 37 1 4.1367 -2.1601 0.0019 38 1 3.0666 -3.6752 -0.2185 39 1 0.8167 -5.0346 0.8146 40 1 0.6493 -4.9360 -0.9548 41 1 1.5494 -7.7804 0.8770 42 1 0.5989 -7.3971 -0.5939 43 1 3.1661 -8.9531 -0.3229 44 1 1.8733 -9.1122 -1.5444 45 1 4.0319 -11.1944 -2.1600 46 1 2.1107 -5.8905 -2.4453 47 1 3.7538 -5.5211 -1.8379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028576377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:07 Heat of formation + Delta-G solvation = 43.146228 kcal Electronic energy + Delta-G solvation = -28228.538047 eV Core-core repulsion = 24376.641237 eV Total energy + Delta-G solvation = -3851.896811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35813 -39.69778 -37.86272 -37.23268 -34.96994 -33.89837 -32.53476 -32.08602 -30.75035 -29.71064 -28.43284 -27.86321 -25.77678 -24.85316 -23.52608 -22.86432 -22.34982 -21.09984 -20.04262 -19.97406 -18.61737 -17.82028 -17.12020 -16.78893 -16.05338 -15.84790 -15.58490 -15.08749 -14.87680 -14.67335 -14.59969 -14.36551 -13.89818 -13.75344 -13.54354 -13.29404 -13.17833 -12.95660 -12.43127 -12.27696 -12.12112 -12.01839 -11.80369 -11.77160 -11.62095 -11.45161 -10.94331 -10.86267 -10.82877 -10.44624 -10.18930 -10.10527 -10.01549 -9.91708 -9.70042 -9.54809 -9.19673 -8.91376 -8.63847 -8.60425 -6.87410 -5.75059 -3.08796 -0.13027 0.33454 1.51306 2.29586 2.99079 3.05352 3.36822 3.42048 3.44126 3.76750 3.88501 4.16752 4.25060 4.34454 4.43435 4.45873 4.73927 4.76044 4.88267 5.03059 5.09763 5.16550 5.28986 5.36488 5.37986 5.50461 5.53205 5.58318 5.63961 5.65903 5.76420 5.83399 5.94545 5.96541 6.00033 6.02817 6.04717 6.22219 6.29930 6.37133 6.44134 6.48321 6.49112 6.62815 6.85354 7.37023 7.52101 7.59408 7.62688 7.79009 8.07245 8.22249 9.18288 9.78671 10.44464 11.36657 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002453 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.569971 B =11410.520829 C =13154.809684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.213 3.787 3 N -0.484 5.484 4 C 0.150 3.850 5 C -0.103 4.103 6 C -0.090 4.090 7 C -0.125 4.125 8 C -0.083 4.083 9 C -0.119 4.119 10 C -0.012 4.012 11 C -0.185 4.185 12 C 0.560 3.440 13 O -0.529 6.529 14 N -0.718 5.718 15 C 0.133 3.867 16 C -0.119 4.119 17 H 0.079 0.921 18 C -0.134 4.134 19 C 0.177 3.823 20 N -0.606 5.606 21 C -0.230 4.230 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.142 3.858 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.399 0.601 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.020 0.980 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 23.160 7.331 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.060 3.940 3 N -0.192 5.192 4 C 0.029 3.971 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.143 4.143 8 C -0.102 4.102 9 C -0.122 4.122 10 C -0.039 4.039 11 C -0.191 4.191 12 C 0.347 3.653 13 O -0.407 6.407 14 N -0.369 5.369 15 C 0.009 3.991 16 C -0.138 4.138 17 H 0.098 0.902 18 C -0.173 4.173 19 C 0.052 3.948 20 N -0.333 5.333 21 C -0.358 4.358 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.016 3.984 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.235 0.765 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.486 23.756 7.333 24.866 hybrid contribution 1.836 -1.242 -0.666 2.315 sum 1.350 22.514 6.666 23.519 Atomic orbital electron populations 1.21117 0.87225 1.04024 1.04436 1.21606 0.97710 0.86178 0.88508 1.67916 1.08197 1.28119 1.15016 1.19021 0.89179 0.93035 0.95901 1.20819 0.94225 0.96398 1.00705 1.20995 0.93692 0.98892 0.97377 1.20947 1.00562 0.92249 1.00554 1.21102 0.92441 0.98903 0.97764 1.18777 0.95026 0.93576 1.04774 1.22056 0.93259 0.97844 0.90703 1.20851 0.94040 0.95445 1.08733 1.17913 0.87169 0.83201 0.77025 1.90735 1.13372 1.86927 1.49688 1.46020 1.11180 1.06087 1.73599 1.21472 0.94434 0.80915 1.02242 1.22629 0.97694 0.93906 0.99617 0.90228 1.22859 0.99217 0.94737 1.00517 1.21153 0.92036 0.90768 0.90814 1.44481 1.45637 1.00104 1.43041 1.19045 1.13226 0.91356 1.12188 0.90509 1.24809 1.00057 0.95918 0.99668 1.69964 1.44202 1.01988 1.40739 0.86123 0.80933 0.78173 0.80549 1.21603 1.21635 1.20694 1.21583 0.96452 0.88289 0.92113 0.89749 0.91230 0.87607 0.84555 0.85128 0.85234 0.84754 0.83623 0.76547 0.91289 0.90963 0.91948 0.92119 0.93530 0.93857 0.93721 0.96254 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 8.82 36.01 0.32 -0.94 16 2 C 0.21 2.66 6.82 -82.15 -0.56 2.10 16 3 N -0.48 -6.12 10.20 -6.94 -0.07 -6.19 16 4 C 0.15 1.71 6.61 -84.79 -0.56 1.15 16 5 C -0.10 -0.92 9.97 -39.48 -0.39 -1.32 16 6 C -0.09 -0.62 9.94 -39.93 -0.40 -1.02 16 7 C -0.13 -0.86 9.96 -39.93 -0.40 -1.25 16 8 C -0.08 -0.66 9.77 -39.47 -0.39 -1.05 16 9 C -0.12 -1.23 5.74 -106.81 -0.61 -1.84 16 10 C -0.01 -0.12 9.38 -38.43 -0.36 -0.48 16 11 C -0.19 -2.20 5.89 -104.83 -0.62 -2.82 16 12 C 0.56 7.30 7.69 -12.37 -0.10 7.21 16 13 O -0.53 -8.08 13.31 5.31 0.07 -8.01 16 14 N -0.72 -8.60 5.45 -61.28 -0.33 -8.93 16 15 C 0.13 1.78 5.13 -4.04 -0.02 1.76 16 16 C -0.12 -1.86 3.05 -88.48 -0.27 -2.13 16 17 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.13 -2.35 6.42 -24.90 -0.16 -2.51 16 19 C 0.18 4.17 5.37 -3.06 -0.02 4.15 16 20 N -0.61 -15.04 3.39 -170.07 -0.58 -15.61 16 21 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 22 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 24 N -0.92 -26.76 10.31 55.49 0.57 -26.18 16 25 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C 0.14 2.74 6.65 -2.54 -0.02 2.73 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 1.31 5.81 -51.93 -0.30 1.01 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.15 1.06 6.53 -52.48 -0.34 0.72 16 38 H 0.40 4.03 6.59 -40.82 -0.27 3.76 16 39 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 40 H 0.07 1.05 7.96 -51.93 -0.41 0.63 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 43 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 44 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -32.81 381.45 -11.11 -43.93 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.70 Total: 1.50 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -4.80 Total: -3.02 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.41 Total: -56.92 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.81 -11.11 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028576377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.073 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds