Wall clock time and date at job start Tue Mar 31 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30824 * 119.23056 * 2 1 4 4 C 1.33785 * 121.72259 * 179.97438 * 3 2 1 5 5 C 1.40532 * 120.82849 * 179.97438 * 4 3 2 6 6 C 1.36129 * 119.81306 * 180.02562 * 5 4 3 7 7 C 1.39346 * 121.09846 * 359.97438 * 6 5 4 8 8 C 1.36132 * 120.83569 * 0.04815 * 7 6 5 9 9 C 1.40555 * 119.61581 * 359.70115 * 8 7 6 10 10 C 1.40495 * 121.22060 * 179.73152 * 9 8 7 11 11 C 1.39050 * 117.96395 * 180.29202 * 10 9 8 12 12 C 1.47759 * 120.26917 * 180.27046 * 11 10 9 13 13 O 1.21562 * 119.99948 * 173.69129 * 12 11 10 14 14 N 1.34777 * 119.99835 * 353.69279 * 12 11 10 15 15 C 1.46504 * 120.00023 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47147 * 179.97438 * 15 14 12 17 17 H 1.09000 * 110.88978 * 51.11589 * 16 15 14 18 18 C 1.55159 * 111.00498 * 174.99689 * 16 15 14 19 19 C 1.54322 * 102.94795 * 153.57526 * 18 16 15 20 20 N 1.47031 * 107.26509 * 337.80683 * 19 18 16 21 21 C 1.36941 * 125.64425 * 178.91486 * 20 19 18 22 22 H 1.07999 * 119.99944 * 180.02562 * 21 20 19 23 23 C 1.38816 * 119.99990 * 0.03081 * 21 20 19 24 24 N 1.31614 * 119.99783 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99747 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47340 * 89.99907 * 25 23 21 27 27 H 1.48505 * 109.46852 * 210.00213 * 25 23 21 28 28 H 1.48505 * 109.47151 * 329.99740 * 25 23 21 29 29 C 1.47418 * 108.70330 * 358.94283 * 20 19 18 30 30 H 1.08999 * 109.47054 * 263.32921 * 1 2 3 31 31 H 1.08990 * 109.47240 * 23.33284 * 1 2 3 32 32 H 1.09000 * 109.46990 * 143.33899 * 1 2 3 33 33 H 1.07997 * 120.09002 * 0.04018 * 5 4 3 34 34 H 1.07999 * 119.45090 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.58075 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.19342 * 180.02562 * 8 7 6 37 37 H 1.08007 * 121.01761 * 0.56751 * 10 9 8 38 38 H 0.97000 * 120.00554 * 359.97438 * 14 12 11 39 39 H 1.09008 * 109.46423 * 299.99429 * 15 14 12 40 40 H 1.09000 * 109.47011 * 59.99230 * 15 14 12 41 41 H 1.09003 * 110.72247 * 271.94272 * 18 16 15 42 42 H 1.09007 * 110.72118 * 35.03479 * 18 16 15 43 43 H 1.08995 * 109.88426 * 97.22292 * 19 18 16 44 44 H 1.09001 * 109.88434 * 218.39292 * 19 18 16 45 45 H 0.97008 * 119.99598 * 180.02562 * 24 23 21 46 46 H 1.09003 * 110.36436 * 265.28207 * 29 20 19 47 47 H 1.09007 * 110.36604 * 142.96610 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1495 2.4368 0.0000 6 6 5.5103 2.4718 0.0000 7 6 6.2606 1.2976 0.0010 8 6 5.6512 0.0802 0.0011 9 6 4.2477 0.0060 0.0065 10 6 3.5839 -1.2322 0.0012 11 6 2.1934 -1.2266 0.0007 12 6 1.4434 -2.4997 0.0012 13 8 0.2333 -2.4923 0.1166 14 7 2.1011 -3.6692 -0.1261 15 6 1.3575 -4.9316 -0.1262 16 6 2.3340 -6.0987 -0.2843 17 1 3.1453 -6.0275 0.4402 18 6 1.5985 -7.4595 -0.1635 19 6 2.4930 -8.4103 -0.9865 20 7 3.2710 -7.5803 -1.9180 21 6 4.2009 -8.0410 -2.8115 22 1 4.7214 -7.3473 -3.4551 23 6 4.4745 -9.3997 -2.8900 24 7 3.8404 -10.2450 -2.1053 25 14 5.7425 -10.0281 -4.1092 26 1 7.0805 -10.0488 -3.4655 27 1 5.3782 -11.4024 -4.5381 28 1 5.7767 -9.1328 -5.2935 29 6 2.8846 -6.1701 -1.7304 30 1 -0.3633 -0.1194 1.0207 31 1 -0.3633 0.9435 -0.4070 32 1 -0.3633 -0.8244 -0.6136 33 1 3.5840 3.3569 -0.0002 34 1 6.0169 3.4256 -0.0009 35 1 7.3391 1.3540 0.0014 36 1 6.2429 -0.8233 0.0024 37 1 4.1367 -2.1601 0.0019 38 1 3.0666 -3.6752 -0.2185 39 1 0.8167 -5.0346 0.8146 40 1 0.6493 -4.9360 -0.9548 41 1 1.5494 -7.7804 0.8770 42 1 0.5989 -7.3971 -0.5939 43 1 3.1661 -8.9531 -0.3229 44 1 1.8733 -9.1122 -1.5444 45 1 4.0319 -11.1944 -2.1600 46 1 2.1107 -5.8905 -2.4453 47 1 3.7538 -5.5211 -1.8379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028576377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:06 Heat of formation + Delta-G solvation = 23.335948 kcal Electronic energy + Delta-G solvation = -28229.397085 eV Core-core repulsion = 24376.641237 eV Total energy + Delta-G solvation = -3852.755849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14115 -40.65545 -39.29495 -38.05667 -36.19181 -34.87075 -34.13622 -32.84863 -31.86699 -31.10328 -29.83538 -28.75683 -27.31356 -25.99102 -24.87788 -23.59108 -23.06292 -22.26471 -21.67947 -21.28557 -19.50393 -18.81958 -18.56872 -17.84173 -17.16985 -16.71595 -16.61314 -16.52846 -16.15703 -15.61170 -15.51317 -15.44166 -15.29883 -14.68422 -14.58574 -14.37012 -14.02721 -13.97953 -13.88672 -13.78754 -13.42472 -13.12650 -12.98008 -12.77118 -12.70106 -12.62123 -12.42151 -12.33805 -12.02254 -11.86984 -11.82330 -11.62351 -11.53319 -11.44441 -11.02210 -10.69641 -10.48442 -10.16803 -9.71435 -9.26928 -8.88621 -7.84331 -5.19600 -0.84448 -0.41360 0.82651 1.46443 1.48149 1.51269 1.56716 2.02685 2.19520 2.50107 3.03096 3.13553 3.34096 3.43901 3.48879 3.59968 3.63294 3.77661 3.83427 4.02777 4.04458 4.09436 4.21785 4.31772 4.39925 4.46122 4.57563 4.64062 4.66089 4.72707 4.76562 4.83298 4.84078 4.92829 4.94481 5.04352 5.06392 5.10309 5.20791 5.35850 5.36532 5.45159 5.46843 5.47749 5.51452 5.69726 5.79749 5.86137 6.21293 6.43348 6.82024 7.11128 7.11504 7.79487 8.43568 9.26159 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002453 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.569971 B =11410.520829 C =13154.809684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.194 3.806 3 N -0.504 5.504 4 C 0.125 3.875 5 C -0.125 4.125 6 C -0.075 4.075 7 C -0.122 4.122 8 C -0.088 4.088 9 C -0.135 4.135 10 C 0.000 4.000 11 C -0.205 4.205 12 C 0.564 3.436 13 O -0.556 6.556 14 N -0.710 5.710 15 C 0.145 3.855 16 C -0.095 4.095 17 H 0.092 0.908 18 C -0.122 4.122 19 C 0.182 3.818 20 N -0.629 5.629 21 C -0.241 4.241 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.977 3.023 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.269 1.269 29 C 0.137 3.863 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.410 0.590 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.013 0.987 44 H 0.002 0.998 45 H 0.246 0.754 46 H 0.017 0.983 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 25.120 7.656 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.041 3.959 3 N -0.213 5.213 4 C 0.004 3.996 5 C -0.144 4.144 6 C -0.095 4.095 7 C -0.140 4.140 8 C -0.107 4.107 9 C -0.137 4.137 10 C -0.026 4.026 11 C -0.211 4.211 12 C 0.351 3.649 13 O -0.437 6.437 14 N -0.362 5.362 15 C 0.021 3.979 16 C -0.115 4.115 17 H 0.111 0.889 18 C -0.161 4.161 19 C 0.057 3.943 20 N -0.355 5.355 21 C -0.370 4.370 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.806 3.194 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.194 1.194 29 C 0.012 3.988 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.191 0.809 38 H 0.247 0.753 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.031 0.969 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.035 0.965 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.838 25.761 7.656 26.938 hybrid contribution 1.234 -1.718 -0.787 2.257 sum 3.072 24.043 6.869 25.193 Atomic orbital electron populations 1.21007 0.87223 1.03726 1.04109 1.21729 0.98054 0.86700 0.89403 1.67887 1.09288 1.28297 1.15870 1.19463 0.89018 0.94589 0.96562 1.21022 0.95371 0.95860 1.02109 1.21418 0.92869 1.00579 0.94635 1.21393 1.02202 0.91640 0.98717 1.21435 0.91445 1.00564 0.97246 1.19027 0.96269 0.93201 1.05243 1.22362 0.92561 0.98995 0.88703 1.20711 0.94853 0.94458 1.11036 1.18050 0.86858 0.83637 0.76319 1.90723 1.14606 1.87319 1.51033 1.45858 1.11655 1.05308 1.73370 1.21229 0.93607 0.80550 1.02484 1.22425 0.98033 0.93695 0.97336 0.88935 1.22718 0.98464 0.94205 1.00738 1.20923 0.91560 0.91507 0.90291 1.44810 1.45315 1.02643 1.42764 1.19465 1.13340 0.91730 1.12428 0.89865 1.25656 1.02365 0.96342 1.01764 1.70193 1.45809 1.01706 1.42434 0.85096 0.78526 0.77102 0.78720 1.21052 1.22389 1.19409 1.21782 0.97029 0.85651 0.94363 0.89865 0.90650 0.88869 0.84131 0.82012 0.82129 0.82405 0.80942 0.75285 0.90208 0.91854 0.89556 0.91033 0.96874 0.97934 0.94488 0.96483 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 8.82 71.24 0.63 -1.81 16 2 C 0.19 4.93 6.82 43.28 0.30 5.23 16 3 N -0.50 -12.92 10.20 -175.86 -1.79 -14.72 16 4 C 0.12 2.76 6.61 40.29 0.27 3.03 16 5 C -0.13 -2.07 9.97 22.34 0.22 -1.85 16 6 C -0.08 -0.80 9.94 22.05 0.22 -0.58 16 7 C -0.12 -1.18 9.96 22.05 0.22 -0.97 16 8 C -0.09 -1.12 9.77 22.34 0.22 -0.90 16 9 C -0.14 -2.53 5.74 -21.28 -0.12 -2.66 16 10 C 0.00 0.00 9.38 23.02 0.22 0.21 16 11 C -0.21 -4.75 5.89 -20.00 -0.12 -4.87 16 12 C 0.56 14.19 7.69 86.76 0.67 14.85 16 13 O -0.56 -16.93 13.31 -3.91 -0.05 -16.98 16 14 N -0.71 -15.52 5.45 -466.05 -2.54 -18.06 16 15 C 0.14 3.57 5.13 86.38 0.44 4.02 16 16 C -0.10 -2.77 3.05 -9.41 -0.03 -2.80 16 17 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 18 C -0.12 -4.13 6.42 31.78 0.20 -3.93 16 19 C 0.18 8.77 5.37 86.73 0.47 9.24 16 20 N -0.63 -31.27 3.39 -691.98 -2.35 -33.62 16 21 C -0.24 -13.20 10.28 84.03 0.86 -12.33 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 23 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 24 N -0.95 -57.03 10.31 21.65 0.22 -56.81 16 25 Si 0.98 45.15 29.55 68.60 2.03 47.17 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 C 0.14 5.08 6.65 86.85 0.58 5.66 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.42 5.81 -2.39 -0.01 2.40 16 33 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 35 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.17 1.97 6.53 -2.91 -0.02 1.95 16 38 H 0.41 7.10 6.59 -92.71 -0.61 6.49 16 39 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.06 1.72 7.96 -2.39 -0.02 1.71 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.07 2.27 8.04 -2.38 -0.02 2.25 16 43 H 0.01 0.70 7.38 -2.39 -0.02 0.69 16 44 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 45 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 46 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 47 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -74.29 381.45 1.60 -72.69 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.38 Total: 14.16 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.70 Total: 6.16 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -6.46 Total: -123.20 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.05 Total: -16.98 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.29 1.60 -72.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028576377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.028 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds