Wall clock time and date at job start Tue Mar 31 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39235 * 119.15480 * 2 1 4 4 C 1.36635 * 119.90609 * 180.02562 * 3 2 1 5 5 C 1.40796 * 118.15834 * 359.97438 * 4 3 2 6 6 C 1.40477 * 121.27370 * 179.97438 * 5 4 3 7 7 C 1.36314 * 120.08795 * 180.02562 * 6 5 4 8 8 C 1.38906 * 121.06039 * 0.02562 * 7 6 5 9 9 C 1.38706 * 120.72243 * 0.02562 * 8 7 6 10 10 C 1.47440 * 120.33333 * 180.02562 * 9 8 7 11 11 O 1.21604 * 120.00205 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99819 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00025 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47107 * 180.02562 * 13 12 10 15 15 H 1.08990 * 110.64496 * 305.70165 * 14 13 12 16 16 C 1.55164 * 110.71943 * 182.56051 * 14 13 12 17 17 C 1.54906 * 101.57987 * 206.13820 * 16 14 13 18 18 N 1.47429 * 104.83558 * 37.01107 * 17 16 14 19 19 C 1.36930 * 125.64861 * 155.90429 * 18 17 16 20 20 H 1.08004 * 119.99800 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00092 * 359.97438 * 19 18 17 22 22 N 1.31616 * 120.00317 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99946 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46737 * 89.99924 * 23 21 19 25 25 H 1.48496 * 109.47347 * 210.00164 * 23 21 19 26 26 H 1.48501 * 109.47120 * 330.00112 * 23 21 19 27 27 C 1.47317 * 108.73206 * 335.71669 * 18 17 16 28 28 C 1.41548 * 118.93486 * 0.02562 * 5 4 3 29 29 N 1.31230 * 119.15991 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47356 * 90.00146 * 1 2 3 31 31 H 1.08999 * 109.47153 * 210.00233 * 1 2 3 32 32 H 1.09006 * 109.47567 * 329.99741 * 1 2 3 33 33 H 1.08000 * 120.04744 * 359.74341 * 3 2 1 34 34 H 1.08003 * 120.92263 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95122 * 0.05600 * 6 5 4 36 36 H 1.08003 * 119.46929 * 180.02562 * 7 6 5 37 37 H 1.07994 * 119.63926 * 180.02562 * 8 7 6 38 38 H 0.96996 * 119.99860 * 0.02562 * 12 10 9 39 39 H 1.09005 * 109.47435 * 300.00401 * 13 12 10 40 40 H 1.09002 * 109.47082 * 60.00522 * 13 12 10 41 41 H 1.08997 * 111.00274 * 324.21131 * 16 14 13 42 42 H 1.08994 * 111.00445 * 88.02536 * 16 14 13 43 43 H 1.09000 * 110.36678 * 155.84560 * 17 16 14 44 44 H 1.09000 * 110.36863 * 278.05921 * 17 16 14 45 45 H 0.96999 * 120.00478 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.06124 * 241.87254 * 27 18 17 47 47 H 1.08994 * 109.85371 * 120.61486 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2322 0.0014 -0.0005 6 6 5.6357 -0.0566 -0.0016 7 6 6.2699 -1.2632 -0.0021 8 6 5.5500 -2.4512 -0.0020 9 6 4.1630 -2.4393 -0.0021 10 6 3.4074 -3.7053 -0.0015 11 8 2.1915 -3.6878 -0.0010 12 7 4.0644 -4.8821 -0.0014 13 6 3.3137 -6.1402 -0.0003 14 6 4.2911 -7.3173 0.0001 15 1 4.9942 -7.2333 -0.8284 16 6 3.5264 -8.6658 -0.0635 17 6 4.5349 -9.6274 0.6132 18 7 5.1502 -8.8317 1.6910 19 6 5.7310 -9.3365 2.8237 20 1 6.1563 -8.6670 3.5567 21 6 5.7732 -10.7086 3.0297 22 7 5.2554 -11.5245 2.1361 23 14 6.5662 -11.3972 4.5746 24 1 5.5431 -11.5184 5.6442 25 1 7.1383 -12.7361 4.2827 26 1 7.6475 -10.4844 5.0250 27 6 5.0411 -7.4036 1.3461 28 6 3.4788 -1.1970 -0.0005 29 7 2.1464 -1.1460 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6323 2.1436 -0.0042 34 1 4.0943 2.1676 -0.0001 35 1 6.2131 0.8562 -0.0015 36 1 7.3494 -1.2961 -0.0025 37 1 6.0759 -3.3944 -0.0020 38 1 5.0343 -4.8961 -0.0014 39 1 2.6869 -6.1885 0.8902 40 1 2.6857 -6.1893 -0.8899 41 1 2.5960 -8.6144 0.5019 42 1 3.3379 -8.9598 -1.0960 43 1 4.0154 -10.4910 1.0285 44 1 5.2914 -9.9489 -0.1026 45 1 5.2845 -12.4833 2.2802 46 1 6.0345 -6.9663 1.2457 47 1 4.4789 -6.8783 2.1181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028624041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:11 Heat of formation + Delta-G solvation = 48.322453 kcal Electronic energy + Delta-G solvation = -28242.713809 eV Core-core repulsion = 24391.041456 eV Total energy + Delta-G solvation = -3851.672353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25110 -39.37379 -37.66326 -37.29520 -34.56480 -33.72286 -32.55430 -32.17178 -30.73007 -29.57874 -28.23465 -28.02840 -25.61492 -24.29041 -24.00971 -22.73508 -22.68606 -20.63990 -19.93488 -19.60798 -18.37430 -17.95565 -16.82645 -16.70803 -16.20497 -15.65321 -15.31394 -15.05928 -14.97054 -14.66932 -14.34005 -14.16663 -14.02322 -13.65192 -13.27045 -13.17176 -13.14152 -12.66156 -12.49471 -12.45232 -12.32068 -11.78024 -11.68712 -11.61909 -11.59699 -11.44851 -10.93901 -10.78970 -10.75443 -10.38353 -10.13093 -10.02411 -9.95386 -9.77784 -9.52462 -9.23188 -8.99753 -8.86279 -8.63652 -8.49719 -6.81904 -5.64012 -3.05523 -0.11629 0.51622 1.49922 2.47848 3.20002 3.24654 3.40890 3.45617 3.47570 3.91182 3.93577 4.24209 4.34472 4.47589 4.49991 4.54150 4.70204 4.78343 4.96628 5.03299 5.15052 5.24536 5.30931 5.38741 5.39685 5.43939 5.55113 5.56723 5.61466 5.73365 5.74488 5.81325 5.87953 5.93097 6.01675 6.12956 6.16357 6.21788 6.37905 6.48725 6.53307 6.58013 6.62340 6.77033 6.94110 7.53313 7.63643 7.64239 7.83963 7.87459 8.38014 8.41726 9.23604 9.84399 10.49605 11.39993 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.002207 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.159867 B =12683.250684 C =13329.503670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 C -0.173 4.173 4 C -0.057 4.057 5 C -0.118 4.118 6 C -0.072 4.072 7 C -0.127 4.127 8 C -0.061 4.061 9 C -0.107 4.107 10 C 0.550 3.450 11 O -0.502 6.502 12 N -0.726 5.726 13 C 0.135 3.865 14 C -0.115 4.115 15 H 0.075 0.925 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.141 3.859 28 C 0.168 3.832 29 N -0.438 5.438 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.012 0.988 45 H 0.252 0.748 46 H 0.018 0.982 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 27.284 -7.962 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.005 3.995 3 C -0.193 4.193 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.091 4.091 7 C -0.145 4.145 8 C -0.082 4.082 9 C -0.111 4.111 10 C 0.335 3.665 11 O -0.376 6.376 12 N -0.379 5.379 13 C 0.012 3.988 14 C -0.134 4.134 15 H 0.094 0.906 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.015 3.985 28 C 0.045 3.955 29 N -0.146 5.146 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.430 26.200 -7.854 27.566 hybrid contribution 1.641 0.484 0.759 1.872 sum -1.789 26.684 -7.095 27.669 Atomic orbital electron populations 1.20790 0.88537 1.03779 1.03346 1.21723 0.97580 0.88052 0.92143 1.21784 0.95068 0.99408 1.03008 1.21443 0.94494 0.96991 0.95307 1.18824 0.94806 0.94007 1.04341 1.21148 0.92547 0.98704 0.96654 1.20850 1.00739 0.91878 1.01018 1.21517 0.92581 0.99340 0.94725 1.19973 0.93156 0.92659 1.05300 1.17903 0.87617 0.83020 0.77942 1.90843 1.12669 1.86912 1.47223 1.46026 1.10347 1.05783 1.75708 1.21437 0.94153 0.81055 1.02144 1.22446 0.97383 0.94523 0.99037 0.90645 1.23001 0.99557 0.94703 1.00155 1.21924 0.92417 0.94368 0.88569 1.44577 1.68224 0.99307 1.20978 1.19078 1.29677 0.90568 0.95705 0.90564 1.24790 1.01476 0.95853 0.98644 1.69795 1.50442 1.02305 1.34586 0.86074 0.78767 0.78300 0.82368 1.21584 1.21661 1.20781 1.21389 0.96107 0.88201 0.92832 1.18575 0.89379 0.91340 0.96234 1.68172 1.07718 1.27693 1.11049 0.90105 0.89838 0.90657 0.84498 0.84213 0.84901 0.84681 0.84564 0.76827 0.91202 0.91617 0.91808 0.92121 0.87546 0.97040 0.93738 0.96440 0.95676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.14 36.00 0.37 -0.53 16 2 C 0.16 1.76 6.78 -82.48 -0.56 1.20 16 3 C -0.17 -1.42 9.64 -39.79 -0.38 -1.80 16 4 C -0.06 -0.45 9.90 -39.19 -0.39 -0.84 16 5 C -0.12 -1.22 5.74 -106.83 -0.61 -1.83 16 6 C -0.07 -0.56 9.75 -39.43 -0.38 -0.94 16 7 C -0.13 -0.99 9.93 -40.03 -0.40 -1.39 16 8 C -0.06 -0.60 9.52 -39.16 -0.37 -0.97 16 9 C -0.11 -1.44 5.91 -104.61 -0.62 -2.06 16 10 C 0.55 8.71 7.76 -12.51 -0.10 8.61 16 11 O -0.50 -9.74 15.19 5.27 0.08 -9.66 16 12 N -0.73 -10.20 5.38 -61.38 -0.33 -10.53 16 13 C 0.14 2.11 5.00 -4.04 -0.02 2.09 16 14 C -0.11 -1.94 2.98 -88.78 -0.26 -2.21 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 16 C -0.13 -2.55 6.54 -24.58 -0.16 -2.71 16 17 C 0.15 3.70 5.89 -2.53 -0.01 3.68 16 18 N -0.60 -15.58 3.40 -169.83 -0.58 -16.16 16 19 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 20 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.14 2.89 6.66 -2.90 -0.02 2.87 16 28 C 0.17 2.32 6.61 -84.58 -0.56 1.76 16 29 N -0.44 -6.52 8.33 -7.01 -0.06 -6.58 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.14 1.06 6.36 -52.49 -0.33 0.72 16 38 H 0.40 4.63 6.42 -40.82 -0.26 4.36 16 39 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.11 2.92 5.87 -51.93 -0.31 2.62 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.03 0.53 7.73 -51.93 -0.40 0.13 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -35.78 383.65 -11.06 -46.84 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.75 Total: 1.53 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -4.74 Total: -1.90 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.41 Total: -59.78 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.78 -11.06 -46.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028624041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.161 kcal (2) G-P(sol) polarization free energy of solvation -35.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds