Wall clock time and date at job start Tue Mar 31 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39235 * 119.15480 * 2 1 4 4 C 1.36635 * 119.90609 * 180.02562 * 3 2 1 5 5 C 1.40796 * 118.15834 * 359.97438 * 4 3 2 6 6 C 1.40477 * 121.27370 * 179.97438 * 5 4 3 7 7 C 1.36314 * 120.08795 * 180.02562 * 6 5 4 8 8 C 1.38906 * 121.06039 * 0.02562 * 7 6 5 9 9 C 1.38706 * 120.72243 * 0.02562 * 8 7 6 10 10 C 1.47440 * 120.33333 * 180.02562 * 9 8 7 11 11 O 1.21604 * 120.00205 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99819 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00025 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47107 * 180.02562 * 13 12 10 15 15 H 1.08990 * 110.64496 * 305.70165 * 14 13 12 16 16 C 1.55164 * 110.71943 * 182.56051 * 14 13 12 17 17 C 1.54906 * 101.57987 * 206.13820 * 16 14 13 18 18 N 1.47429 * 104.83558 * 37.01107 * 17 16 14 19 19 C 1.36930 * 125.64861 * 155.90429 * 18 17 16 20 20 H 1.08004 * 119.99800 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00092 * 359.97438 * 19 18 17 22 22 N 1.31616 * 120.00317 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99946 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46737 * 89.99924 * 23 21 19 25 25 H 1.48496 * 109.47347 * 210.00164 * 23 21 19 26 26 H 1.48501 * 109.47120 * 330.00112 * 23 21 19 27 27 C 1.47317 * 108.73206 * 335.71669 * 18 17 16 28 28 C 1.41548 * 118.93486 * 0.02562 * 5 4 3 29 29 N 1.31230 * 119.15991 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47356 * 90.00146 * 1 2 3 31 31 H 1.08999 * 109.47153 * 210.00233 * 1 2 3 32 32 H 1.09006 * 109.47567 * 329.99741 * 1 2 3 33 33 H 1.08000 * 120.04744 * 359.74341 * 3 2 1 34 34 H 1.08003 * 120.92263 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95122 * 0.05600 * 6 5 4 36 36 H 1.08003 * 119.46929 * 180.02562 * 7 6 5 37 37 H 1.07994 * 119.63926 * 180.02562 * 8 7 6 38 38 H 0.96996 * 119.99860 * 0.02562 * 12 10 9 39 39 H 1.09005 * 109.47435 * 300.00401 * 13 12 10 40 40 H 1.09002 * 109.47082 * 60.00522 * 13 12 10 41 41 H 1.08997 * 111.00274 * 324.21131 * 16 14 13 42 42 H 1.08994 * 111.00445 * 88.02536 * 16 14 13 43 43 H 1.09000 * 110.36678 * 155.84560 * 17 16 14 44 44 H 1.09000 * 110.36863 * 278.05921 * 17 16 14 45 45 H 0.96999 * 120.00478 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.06124 * 241.87254 * 27 18 17 47 47 H 1.08994 * 109.85371 * 120.61486 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2322 0.0014 -0.0005 6 6 5.6357 -0.0566 -0.0016 7 6 6.2699 -1.2632 -0.0021 8 6 5.5500 -2.4512 -0.0020 9 6 4.1630 -2.4393 -0.0021 10 6 3.4074 -3.7053 -0.0015 11 8 2.1915 -3.6878 -0.0010 12 7 4.0644 -4.8821 -0.0014 13 6 3.3137 -6.1402 -0.0003 14 6 4.2911 -7.3173 0.0001 15 1 4.9942 -7.2333 -0.8284 16 6 3.5264 -8.6658 -0.0635 17 6 4.5349 -9.6274 0.6132 18 7 5.1502 -8.8317 1.6910 19 6 5.7310 -9.3365 2.8237 20 1 6.1563 -8.6670 3.5567 21 6 5.7732 -10.7086 3.0297 22 7 5.2554 -11.5245 2.1361 23 14 6.5662 -11.3972 4.5746 24 1 5.5431 -11.5184 5.6442 25 1 7.1383 -12.7361 4.2827 26 1 7.6475 -10.4844 5.0250 27 6 5.0411 -7.4036 1.3461 28 6 3.4788 -1.1970 -0.0005 29 7 2.1464 -1.1460 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6323 2.1436 -0.0042 34 1 4.0943 2.1676 -0.0001 35 1 6.2131 0.8562 -0.0015 36 1 7.3494 -1.2961 -0.0025 37 1 6.0759 -3.3944 -0.0020 38 1 5.0343 -4.8961 -0.0014 39 1 2.6869 -6.1885 0.8902 40 1 2.6857 -6.1893 -0.8899 41 1 2.5960 -8.6144 0.5019 42 1 3.3379 -8.9598 -1.0960 43 1 4.0154 -10.4910 1.0285 44 1 5.2914 -9.9489 -0.1026 45 1 5.2845 -12.4833 2.2802 46 1 6.0345 -6.9663 1.2457 47 1 4.4789 -6.8783 2.1181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028624041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:10 Heat of formation + Delta-G solvation = 25.224734 kcal Electronic energy + Delta-G solvation = -28243.715401 eV Core-core repulsion = 24391.041456 eV Total energy + Delta-G solvation = -3852.673945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.01031 -40.52682 -39.19953 -38.12280 -36.03996 -34.53420 -34.23952 -32.91167 -31.92320 -31.07840 -29.71330 -28.82547 -27.34895 -25.61953 -24.89528 -23.85629 -23.37753 -22.17491 -21.42929 -20.98625 -19.11003 -19.02708 -18.66891 -17.59078 -17.19244 -16.86651 -16.67039 -16.37722 -16.05123 -15.67807 -15.57559 -15.45212 -15.01448 -14.74621 -14.34133 -14.28743 -14.04540 -13.82651 -13.77012 -13.55186 -13.37472 -13.16163 -13.07628 -12.97194 -12.82547 -12.66725 -12.30929 -12.28221 -12.01982 -11.90010 -11.83742 -11.59665 -11.48343 -11.38898 -11.05157 -10.74431 -10.11968 -10.10628 -9.68130 -9.25016 -8.88607 -7.77653 -5.21823 -0.82655 -0.17598 0.76258 1.45828 1.48101 1.56517 1.77065 2.12693 2.21917 2.49251 3.14046 3.23645 3.31778 3.53452 3.63280 3.70150 3.78885 3.84215 3.95501 3.97488 3.98854 4.06024 4.19233 4.36657 4.43211 4.45125 4.60688 4.63972 4.69417 4.71301 4.76017 4.82243 4.89813 4.95084 4.97655 5.04723 5.09242 5.11691 5.17410 5.22479 5.33653 5.37083 5.43054 5.47884 5.59881 5.65507 5.82336 5.85317 6.31448 6.55520 7.10538 7.10908 7.28801 7.78368 8.42308 9.24399 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.002207 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.159867 B =12683.250684 C =13329.503670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.140 3.860 3 C -0.177 4.177 4 C -0.046 4.046 5 C -0.137 4.137 6 C -0.052 4.052 7 C -0.134 4.134 8 C -0.046 4.046 9 C -0.154 4.154 10 C 0.547 3.453 11 O -0.551 6.551 12 N -0.716 5.716 13 C 0.148 3.852 14 C -0.093 4.093 15 H 0.099 0.901 16 C -0.123 4.123 17 C 0.153 3.847 18 N -0.628 5.628 19 C -0.239 4.239 20 H 0.080 0.920 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.980 3.020 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.138 3.862 28 C 0.137 3.863 29 N -0.500 5.500 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.174 0.826 34 H 0.184 0.816 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.153 0.847 38 H 0.409 0.591 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.071 0.929 44 H -0.007 1.007 45 H 0.247 0.753 46 H 0.033 0.967 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 30.961 -8.308 32.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.012 4.012 3 C -0.196 4.196 4 C -0.071 4.071 5 C -0.140 4.140 6 C -0.071 4.071 7 C -0.152 4.152 8 C -0.066 4.066 9 C -0.158 4.158 10 C 0.335 3.665 11 O -0.430 6.430 12 N -0.370 5.370 13 C 0.024 3.976 14 C -0.112 4.112 15 H 0.117 0.883 16 C -0.162 4.162 17 C 0.028 3.972 18 N -0.355 5.355 19 C -0.368 4.368 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.013 3.987 28 C 0.014 3.986 29 N -0.209 5.209 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.191 0.809 34 H 0.202 0.798 35 H 0.193 0.807 36 H 0.189 0.811 37 H 0.171 0.829 38 H 0.247 0.753 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.011 0.989 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.199 29.910 -8.207 31.038 hybrid contribution 0.983 -0.545 0.866 1.418 sum -0.216 29.365 -7.341 30.269 Atomic orbital electron populations 1.20854 0.87549 1.03988 1.03834 1.22272 0.98673 0.88675 0.91590 1.22122 0.95705 0.99436 1.02378 1.21981 0.94566 0.97666 0.92917 1.19183 0.96131 0.93780 1.04857 1.21675 0.91558 1.00449 0.93375 1.21272 1.02397 0.90989 1.00524 1.21826 0.91209 1.01291 0.92282 1.19893 0.94509 0.91410 1.10018 1.18416 0.87327 0.84114 0.76633 1.90800 1.14799 1.87645 1.49709 1.45872 1.10875 1.04917 1.75328 1.21157 0.93677 0.81332 1.01453 1.22281 0.97222 0.93878 0.97802 0.88288 1.22852 0.97942 0.94271 1.01143 1.21719 0.92679 0.94676 0.88129 1.44896 1.68201 1.01602 1.20769 1.19455 1.29571 0.91057 0.96717 0.90256 1.25648 1.02503 0.96261 1.01728 1.70053 1.51562 1.02078 1.36224 0.85047 0.78021 0.77380 0.78696 1.21441 1.21888 1.19383 1.21547 0.97204 0.85544 0.94414 1.18939 0.89607 0.92782 0.97299 1.68105 1.09074 1.29983 1.13770 0.89418 0.92511 0.87435 0.80863 0.79831 0.80682 0.81096 0.82930 0.75317 0.93364 0.91007 0.92187 0.89166 0.91130 0.98907 0.94327 0.94901 0.96451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.14 71.23 0.72 -1.09 16 2 C 0.14 3.16 6.78 42.89 0.29 3.45 16 3 C -0.18 -2.51 9.64 22.13 0.21 -2.30 16 4 C -0.05 -0.58 9.90 22.52 0.22 -0.35 16 5 C -0.14 -2.55 5.74 -21.29 -0.12 -2.67 16 6 C -0.05 -0.60 9.75 22.37 0.22 -0.38 16 7 C -0.13 -1.61 9.93 21.98 0.22 -1.39 16 8 C -0.05 -0.82 9.52 22.54 0.21 -0.61 16 9 C -0.15 -4.22 5.91 -19.86 -0.12 -4.34 16 10 C 0.55 18.13 7.76 86.67 0.67 18.80 16 11 O -0.55 -23.00 15.19 -4.04 -0.06 -23.06 16 12 N -0.72 -20.18 5.38 -466.35 -2.51 -22.69 16 13 C 0.15 4.62 5.00 86.38 0.43 5.05 16 14 C -0.09 -3.06 2.98 -9.60 -0.03 -3.09 16 15 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 16 C -0.12 -4.61 6.54 31.99 0.21 -4.40 16 17 C 0.15 7.63 5.89 86.85 0.51 8.14 16 18 N -0.63 -32.87 3.40 -691.23 -2.35 -35.22 16 19 C -0.24 -13.64 10.28 84.04 0.86 -12.77 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 22 N -0.95 -57.39 10.09 21.65 0.22 -57.17 16 23 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 27 C 0.14 5.63 6.66 86.67 0.58 6.20 16 28 C 0.14 3.84 6.61 40.62 0.27 4.11 16 29 N -0.50 -15.75 8.33 -176.10 -1.47 -17.22 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.06 8.07 -2.38 -0.02 1.04 16 33 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 35 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 36 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.15 2.03 6.36 -2.91 -0.02 2.01 16 38 H 0.41 9.11 6.42 -92.71 -0.60 8.51 16 39 H 0.05 1.73 8.00 -2.38 -0.02 1.71 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.06 2.29 8.05 -2.39 -0.02 2.27 16 42 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.02 0.74 7.73 -2.39 -0.02 0.72 16 Total: -1.00 -84.95 383.65 2.08 -82.86 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.39 Total: 15.36 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.83 Total: 8.85 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -6.11 Total: -132.31 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -84.95 2.08 -82.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028624041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.087 kcal (2) G-P(sol) polarization free energy of solvation -84.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds