Wall clock time and date at job start Tue Mar 31 2020 22:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36535 * 120.88016 * 2 1 4 4 C 1.40243 * 119.81478 * 179.97438 * 3 2 1 5 5 C 1.48274 * 119.23343 * 179.97438 * 4 3 2 6 6 O 1.21503 * 120.00529 * 0.27382 * 5 4 3 7 7 N 1.34784 * 119.99594 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99971 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47267 * 180.02562 * 8 7 5 10 10 H 1.09003 * 110.63957 * 305.70126 * 9 8 7 11 11 C 1.55163 * 110.72266 * 182.56083 * 9 8 7 12 12 C 1.54906 * 101.58167 * 206.13578 * 11 9 8 13 13 N 1.47419 * 104.83330 * 37.00646 * 12 11 9 14 14 C 1.36944 * 125.65117 * 155.90670 * 13 12 11 15 15 H 1.07990 * 120.00578 * 179.97438 * 14 13 12 16 16 C 1.38815 * 119.99356 * 359.97438 * 14 13 12 17 17 N 1.31618 * 120.00241 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99620 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46837 * 60.00058 * 18 16 14 20 20 H 1.48502 * 109.46815 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47033 * 299.99701 * 18 16 14 22 22 C 1.47317 * 108.73874 * 335.71620 * 13 12 11 23 23 N 1.31906 * 121.52574 * 0.27256 * 4 3 2 24 24 C 1.33241 * 121.29453 * 359.43955 * 23 4 3 25 25 C 1.40828 * 120.99301 * 180.23475 * 24 23 4 26 26 C 1.36000 * 119.73339 * 180.29527 * 25 24 23 27 27 C 1.39438 * 121.09209 * 0.02562 * 26 25 24 28 28 C 1.36127 * 120.91610 * 0.02562 * 27 26 25 29 29 C 1.40422 * 119.65030 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46830 * 90.00642 * 1 2 3 31 31 H 1.08998 * 109.47011 * 210.00459 * 1 2 3 32 32 H 1.09000 * 109.47245 * 330.00349 * 1 2 3 33 33 H 1.07997 * 120.09416 * 359.97438 * 3 2 1 34 34 H 0.96999 * 120.00044 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.47024 * 300.00310 * 8 7 5 36 36 H 1.09005 * 109.47136 * 59.99926 * 8 7 5 37 37 H 1.08999 * 110.99892 * 324.21015 * 11 9 8 38 38 H 1.08994 * 111.00581 * 88.02019 * 11 9 8 39 39 H 1.08998 * 110.36689 * 155.84776 * 12 11 9 40 40 H 1.08999 * 110.36564 * 278.06124 * 12 11 9 41 41 H 0.96998 * 119.99840 * 179.97438 * 17 16 14 42 42 H 1.09003 * 110.06389 * 241.87053 * 22 13 12 43 43 H 1.08999 * 109.85313 * 120.61066 * 22 13 12 44 44 H 1.08002 * 120.13418 * 0.27932 * 25 24 23 45 45 H 1.08003 * 119.45416 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.53893 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.17286 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1718 0.0000 4 6 3.6099 1.1457 0.0005 5 6 4.3580 2.4259 0.0000 6 8 3.7561 3.4814 0.0040 7 7 5.7058 2.4188 -0.0001 8 6 6.4450 3.6836 -0.0001 9 6 7.9477 3.3962 -0.0007 10 1 8.2135 2.7391 0.8274 11 6 8.7593 4.7170 0.0641 12 6 10.0884 4.2988 -0.6129 13 7 9.6888 3.3766 -1.6914 14 6 10.4113 3.1126 -2.8243 15 1 10.0306 2.4176 -3.5579 16 6 11.6333 3.7384 -3.0297 17 7 12.0971 4.5858 -2.1358 18 14 12.6193 3.3777 -4.5748 19 1 11.8202 3.7497 -5.7699 20 1 13.8773 4.1665 -4.5545 21 1 12.9444 1.9297 -4.6277 22 6 8.3856 2.7822 -1.3471 23 7 4.2786 0.0087 -0.0043 24 6 3.6481 -1.1650 0.0012 25 6 4.3684 -2.3752 0.0010 26 6 3.6987 -3.5588 0.0006 27 6 2.3048 -3.5975 0.0000 28 6 1.5733 -2.4494 -0.0009 29 6 2.2292 -1.2078 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6837 2.1161 -0.0004 34 1 6.1864 1.5762 -0.0001 35 1 6.1846 4.2566 -0.8901 36 1 6.1847 4.2566 0.8900 37 1 8.2650 5.5074 -0.5007 38 1 8.9256 5.0231 1.0969 39 1 10.5939 5.1710 -1.0274 40 1 10.7351 3.7908 0.1026 41 1 12.9511 5.0228 -2.2792 42 1 8.4823 1.7010 -1.2476 43 1 7.6541 3.0215 -2.1190 44 1 5.4484 -2.3633 0.0008 45 1 4.2556 -4.4842 0.0008 46 1 1.7987 -4.5514 0.0001 47 1 0.4942 -2.4934 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028635435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:41 Heat of formation + Delta-G solvation = 19.609876 kcal Electronic energy + Delta-G solvation = -28087.167768 eV Core-core repulsion = 24234.250345 eV Total energy + Delta-G solvation = -3852.917423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17045 -40.72004 -39.29228 -37.89728 -36.24555 -35.73563 -34.31679 -32.08802 -31.49483 -31.28848 -29.88876 -28.78080 -27.50857 -26.20853 -24.74188 -24.48321 -22.62793 -22.11801 -21.42527 -21.10886 -19.26043 -19.04313 -18.73752 -18.14866 -17.24709 -16.83038 -16.68762 -16.43665 -16.19553 -15.65405 -15.55470 -15.42520 -15.16635 -14.91559 -14.36209 -14.32891 -14.29722 -13.94814 -13.90385 -13.56035 -13.40661 -13.17182 -13.00353 -12.84872 -12.70526 -12.65804 -12.61808 -12.35229 -12.06034 -11.96596 -11.85556 -11.62486 -11.49755 -11.30219 -11.21203 -10.74784 -10.62739 -10.23711 -9.83447 -9.22439 -8.89772 -7.78308 -5.22776 -0.88187 -0.37435 0.88844 1.31981 1.44921 1.48461 1.54920 1.95563 2.18603 2.48638 2.92449 3.04508 3.30495 3.47895 3.55231 3.61932 3.72758 3.78679 3.84229 3.94880 4.04050 4.14550 4.20307 4.30632 4.42085 4.47376 4.49630 4.62019 4.63850 4.68461 4.75202 4.75765 4.88192 4.98974 5.01340 5.02377 5.10614 5.11371 5.13207 5.27098 5.36564 5.39747 5.44674 5.45616 5.51239 5.65210 5.81516 5.85163 6.28545 6.31340 6.64940 7.00991 7.10346 7.77308 8.41289 9.23415 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.002320 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.758184 B =12066.453132 C =13316.382246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.021 4.021 3 C -0.149 4.149 4 C 0.101 3.899 5 C 0.565 3.435 6 O -0.563 6.563 7 N -0.699 5.699 8 C 0.141 3.859 9 C -0.095 4.095 10 H 0.093 0.907 11 C -0.120 4.120 12 C 0.152 3.848 13 N -0.628 5.628 14 C -0.242 4.242 15 H 0.077 0.923 16 C -0.067 4.067 17 N -0.948 5.948 18 Si 0.981 3.019 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.138 3.862 23 N -0.466 5.466 24 C 0.100 3.900 25 C -0.111 4.111 26 C -0.092 4.092 27 C -0.103 4.103 28 C -0.103 4.103 29 C -0.101 4.101 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.073 0.927 40 H -0.010 1.010 41 H 0.248 0.752 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.137 0.863 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.383 -16.877 8.229 32.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.170 4.170 4 C -0.051 4.051 5 C 0.351 3.649 6 O -0.442 6.442 7 N -0.349 5.349 8 C 0.018 3.982 9 C -0.114 4.114 10 H 0.111 0.889 11 C -0.159 4.159 12 C 0.027 3.973 13 N -0.354 5.354 14 C -0.371 4.371 15 H 0.095 0.905 16 C -0.260 4.260 17 N -0.598 5.598 18 Si 0.809 3.191 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.013 3.987 23 N -0.179 5.179 24 C -0.024 4.024 25 C -0.130 4.130 26 C -0.112 4.112 27 C -0.120 4.120 28 C -0.121 4.121 29 C -0.103 4.103 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.168 0.832 34 H 0.252 0.748 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.008 0.992 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.155 0.845 45 H 0.177 0.823 46 H 0.183 0.817 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -25.654 -16.112 8.125 31.364 hybrid contribution 0.721 -0.127 -0.876 1.142 sum -24.933 -16.238 7.249 30.625 Atomic orbital electron populations 1.21008 0.86473 1.05264 1.04579 1.20563 0.98838 0.90656 0.92838 1.21673 0.92877 1.00727 1.01745 1.21167 0.92468 0.91469 1.00016 1.18204 0.82525 0.87751 0.76456 1.90742 1.69288 1.32297 1.51882 1.45906 1.05703 1.11027 1.72263 1.21363 0.89279 0.85136 1.02470 1.22283 0.93031 0.98577 0.97517 0.88852 1.22849 0.95969 0.95767 1.01317 1.21742 0.93095 0.94411 0.88039 1.44893 1.19668 1.50089 1.20761 1.19407 1.00106 1.20905 0.96721 0.90524 1.25644 0.98849 0.99686 1.01774 1.70040 1.20542 1.32931 1.36272 0.85117 0.77592 0.77484 0.78921 1.20406 1.21683 1.20408 1.21520 0.87050 0.95510 0.94606 1.67738 1.40698 0.97938 1.11487 1.19266 0.91178 0.91956 0.99957 1.21084 1.00990 0.90322 1.00577 1.21367 0.95343 0.98191 0.96314 1.21480 0.93803 0.99949 0.96805 1.21408 1.01838 0.90016 0.98841 1.19152 0.93393 0.95887 1.01846 0.88626 0.88424 0.89614 0.83168 0.74766 0.92180 0.89779 0.91606 0.88961 0.90867 0.99169 0.94240 0.95883 0.96281 0.84550 0.82321 0.81724 0.81803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.59 71.24 0.68 -0.29 16 2 C -0.02 -0.36 5.92 -19.66 -0.12 -0.48 16 3 C -0.15 -3.44 9.23 22.36 0.21 -3.23 16 4 C 0.10 2.83 6.75 42.29 0.29 3.12 16 5 C 0.57 17.81 7.81 86.91 0.68 18.49 16 6 O -0.56 -20.23 16.28 -3.72 -0.06 -20.29 16 7 N -0.70 -20.86 5.42 -465.55 -2.52 -23.38 16 8 C 0.14 4.31 5.00 86.38 0.43 4.74 16 9 C -0.09 -3.22 2.98 -9.61 -0.03 -3.25 16 10 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 11 C -0.12 -4.46 6.54 31.99 0.21 -4.25 16 12 C 0.15 7.65 5.89 86.86 0.51 8.16 16 13 N -0.63 -33.54 3.40 -691.26 -2.35 -35.89 16 14 C -0.24 -14.09 10.28 84.03 0.86 -13.23 16 15 H 0.08 4.30 7.83 -2.92 -0.02 4.28 16 16 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 17 N -0.95 -57.59 10.09 21.65 0.22 -57.37 16 18 Si 0.98 46.72 29.55 68.60 2.03 48.74 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 C 0.14 5.91 6.66 86.67 0.58 6.49 16 23 N -0.47 -12.78 9.47 -177.77 -1.68 -14.46 16 24 C 0.10 2.32 6.61 40.48 0.27 2.59 16 25 C -0.11 -2.05 9.99 22.38 0.22 -1.83 16 26 C -0.09 -1.07 9.94 22.04 0.22 -0.85 16 27 C -0.10 -0.89 9.96 22.07 0.22 -0.67 16 28 C -0.10 -1.12 9.31 22.31 0.21 -0.91 16 29 C -0.10 -1.84 5.75 -21.22 -0.12 -1.97 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.38 6.51 -2.39 -0.02 0.37 16 32 H 0.09 0.62 8.10 -2.39 -0.02 0.60 16 33 H 0.15 3.27 7.60 -2.91 -0.02 3.25 16 34 H 0.42 11.86 7.71 -92.71 -0.71 11.14 16 35 H 0.06 2.02 8.00 -2.38 -0.02 2.00 16 36 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 38 H 0.09 2.87 8.14 -2.39 -0.02 2.86 16 39 H 0.07 4.19 5.87 -2.39 -0.01 4.18 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.02 0.84 7.73 -2.39 -0.02 0.82 16 44 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 45 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 47 H 0.16 0.68 6.44 -2.91 -0.02 0.67 16 Total: -1.00 -76.19 384.36 1.69 -74.50 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.28 Total: 18.97 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.78 Total: 9.19 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -6.34 Total: -131.11 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.06 Total: -20.29 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -76.19 1.69 -74.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028635435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.109 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds