Wall clock time and date at job start Tue Mar 31 2020 22:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39434 * 119.53965 * 2 1 4 4 C 1.36000 * 121.08438 * 179.69728 * 3 2 1 5 5 C 1.40829 * 119.73598 * 0.02562 * 4 3 2 6 6 N 1.33267 * 120.99024 * 179.97438 * 5 4 3 7 7 C 1.31882 * 121.29633 * 180.02562 * 6 5 4 8 8 C 1.48278 * 119.23968 * 179.97438 * 7 6 5 9 9 O 1.21492 * 120.00463 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99503 * 0.02562 * 8 7 6 11 11 C 1.46511 * 119.99811 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47081 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.88593 * 51.12021 * 12 11 10 14 14 C 1.55156 * 111.00382 * 175.00167 * 12 11 10 15 15 C 1.54314 * 102.94288 * 153.57684 * 14 12 11 16 16 N 1.47018 * 107.27172 * 337.80476 * 15 14 12 17 17 C 1.36942 * 125.64687 * 178.92505 * 16 15 14 18 18 H 1.08003 * 119.99965 * 174.87492 * 17 16 15 19 19 C 1.38811 * 119.99843 * 354.86777 * 17 16 15 20 20 N 1.31616 * 120.00385 * 7.06727 * 19 17 16 21 21 Si 1.86810 * 119.99683 * 187.06407 * 19 17 16 22 22 H 1.48499 * 109.46924 * 94.98970 * 21 19 17 23 23 H 1.48494 * 109.46754 * 214.98830 * 21 19 17 24 24 H 1.48503 * 109.47203 * 334.99149 * 21 19 17 25 25 C 1.47415 * 108.70405 * 358.93969 * 16 15 14 26 26 C 1.40278 * 121.52403 * 0.02562 * 7 6 5 27 27 C 1.36502 * 119.81086 * 359.97438 * 26 7 6 28 28 C 1.40754 * 118.24730 * 0.02562 * 27 26 7 29 29 C 1.36125 * 119.54250 * 179.72387 * 2 1 3 30 30 H 1.09006 * 109.46651 * 90.00132 * 1 2 3 31 31 H 1.09000 * 109.47262 * 209.99794 * 1 2 3 32 32 H 1.08998 * 109.47101 * 330.00043 * 1 2 3 33 33 H 1.07999 * 119.45864 * 359.71797 * 3 2 1 34 34 H 1.08001 * 120.13328 * 180.02562 * 4 3 2 35 35 H 0.97000 * 120.00863 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47007 * 299.99855 * 11 10 8 37 37 H 1.08997 * 109.46727 * 59.99915 * 11 10 8 38 38 H 1.09003 * 110.71654 * 271.94220 * 14 12 11 39 39 H 1.09007 * 110.71965 * 35.02944 * 14 12 11 40 40 H 1.09000 * 109.88754 * 97.22411 * 15 14 12 41 41 H 1.09005 * 109.88129 * 218.38962 * 15 14 12 42 42 H 0.97001 * 120.00016 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.37495 * 265.28993 * 25 16 15 44 44 H 1.09003 * 110.36844 * 142.96688 * 25 16 15 45 45 H 1.08000 * 120.09189 * 180.02562 * 26 7 6 46 46 H 1.08006 * 120.87681 * 180.02562 * 27 26 7 47 47 H 1.08002 * 120.17664 * 0.25954 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2498 0.0062 5 6 4.2852 0.0462 0.0121 6 7 5.6179 0.0530 0.0177 7 6 6.3086 -1.0705 0.0228 8 6 7.7902 -1.0097 0.0283 9 8 8.4403 -2.0361 0.0325 10 7 8.4156 0.1841 0.0286 11 6 9.8794 0.2442 0.0335 12 6 10.3298 1.7064 0.0322 13 1 9.8306 2.2675 0.8221 14 6 11.8721 1.8134 0.1634 15 6 12.1844 3.1618 -0.5188 16 7 11.0642 3.4639 -1.4218 17 6 10.9457 4.5850 -2.1991 18 1 10.1230 4.6767 -2.8929 19 6 11.8830 5.6037 -2.0954 20 7 12.9586 5.4356 -1.3558 21 14 11.6176 7.2133 -3.0057 22 1 10.9725 8.1951 -2.0974 23 1 12.9267 7.7460 -3.4611 24 1 10.7424 6.9781 -4.1822 25 6 10.0895 2.3602 -1.3515 26 6 5.6742 -2.3216 0.0220 27 6 4.3110 -2.3912 0.0164 28 6 3.5825 -1.1868 0.0110 29 6 2.1782 -1.1843 0.0057 30 1 -0.3633 0.0000 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6382 2.1388 -0.0046 34 1 4.0708 2.1981 0.0065 35 1 7.8966 1.0037 0.0248 36 1 10.2605 -0.2529 0.9256 37 1 10.2665 -0.2556 -0.8544 38 1 12.1694 1.8336 1.2119 39 1 12.3616 0.9912 -0.3588 40 1 12.2760 3.9455 0.2333 41 1 13.1097 3.0830 -1.0896 42 1 13.6137 6.1474 -1.2836 43 1 10.2737 1.6399 -2.1486 44 1 9.0726 2.7474 -1.4166 45 1 6.2627 -3.2271 0.0267 46 1 3.8047 -3.3452 0.0161 47 1 1.6337 -2.1169 0.0060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028679041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:09 Heat of formation + Delta-G solvation = 16.402326 kcal Electronic energy + Delta-G solvation = -27857.388775 eV Core-core repulsion = 24004.332262 eV Total energy + Delta-G solvation = -3853.056513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09002 -40.70525 -39.31682 -38.24513 -36.15681 -34.71262 -34.27119 -33.12715 -31.62904 -31.28631 -30.03543 -28.47617 -27.22564 -25.66412 -25.09914 -24.01440 -23.05651 -22.17551 -21.63553 -21.26816 -19.27766 -19.00576 -18.64885 -17.84168 -17.24702 -16.73342 -16.63196 -16.52357 -16.12627 -15.61830 -15.41392 -15.35591 -15.13865 -14.92088 -14.65275 -14.21014 -14.15348 -14.03925 -13.95661 -13.85135 -13.45003 -13.16503 -13.05487 -12.77970 -12.66310 -12.46061 -12.39232 -12.20849 -12.02141 -11.95806 -11.88371 -11.65081 -11.57944 -11.49520 -11.38480 -10.69361 -10.63079 -10.19361 -9.74110 -9.19884 -8.90464 -7.87096 -5.21523 -0.87011 -0.36419 0.88794 1.34846 1.44727 1.46829 1.55816 1.98684 2.16300 2.48639 2.93168 3.04699 3.30465 3.53731 3.59103 3.63853 3.77056 3.78445 3.88273 3.99889 4.00667 4.03280 4.16910 4.33027 4.42159 4.42489 4.61165 4.65720 4.67511 4.76237 4.77499 4.88814 4.89272 4.92230 5.01440 5.03370 5.06636 5.07248 5.22031 5.27948 5.31187 5.41694 5.45111 5.45517 5.56029 5.67183 5.76998 5.84832 6.19360 6.31061 6.65658 7.03511 7.09561 7.76827 8.41902 9.23955 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.002363 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.673174 B =11847.645185 C =13822.603359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.095 4.095 4 C -0.103 4.103 5 C 0.093 3.907 6 N -0.459 5.459 7 C 0.094 3.906 8 C 0.566 3.434 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.141 3.859 12 C -0.096 4.096 13 H 0.087 0.913 14 C -0.121 4.121 15 C 0.182 3.818 16 N -0.629 5.629 17 C -0.245 4.245 18 H 0.080 0.920 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.138 3.862 26 C -0.138 4.138 27 C -0.050 4.050 28 C -0.094 4.094 29 C -0.107 4.107 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.415 0.585 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.015 0.985 41 H 0.004 0.996 42 H 0.247 0.753 43 H 0.018 0.982 44 H 0.042 0.958 45 H 0.155 0.845 46 H 0.185 0.815 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.436 -16.317 5.987 32.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.122 4.122 5 C -0.031 4.031 6 N -0.171 5.171 7 C -0.059 4.059 8 C 0.351 3.649 9 O -0.442 6.442 10 N -0.350 5.350 11 C 0.018 3.982 12 C -0.116 4.116 13 H 0.105 0.895 14 C -0.159 4.159 15 C 0.057 3.943 16 N -0.355 5.355 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.806 3.194 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.193 1.193 25 C 0.013 3.987 26 C -0.159 4.159 27 C -0.075 4.075 28 C -0.096 4.096 29 C -0.125 4.125 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.173 0.827 34 H 0.156 0.844 35 H 0.252 0.748 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.060 0.940 45 H 0.173 0.827 46 H 0.202 0.798 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.447 -15.983 5.940 31.467 hybrid contribution 0.213 0.922 -0.600 1.120 sum -26.235 -15.061 5.340 30.718 Atomic orbital electron populations 1.20941 0.88309 1.04382 1.03633 1.20188 0.98284 0.92495 0.96413 1.21211 0.93251 0.99515 0.97470 1.21059 0.94636 0.96596 0.99915 1.19216 0.88540 0.94600 1.00729 1.67727 1.08696 1.30133 1.10593 1.21230 0.93353 0.90772 1.00553 1.18188 0.86592 0.83646 0.76448 1.90742 1.66804 1.34697 1.51910 1.45920 1.08041 1.08752 1.72287 1.21319 0.78660 0.95544 1.02710 1.22409 0.96968 0.94344 0.97835 0.89519 1.22719 0.94288 0.97450 1.01468 1.20942 0.89419 0.92630 0.91322 1.44810 1.21090 1.20056 1.49551 1.19450 1.08696 0.93847 1.15361 0.90193 1.25687 0.96841 1.01805 1.01594 1.70199 1.11339 1.33001 1.45303 0.85063 0.76690 0.79563 0.78052 1.21218 1.22094 1.19297 1.21740 0.92760 0.89322 0.94880 1.21842 0.96207 0.98059 0.99760 1.21860 0.92787 0.99099 0.93765 1.19249 0.96140 0.93624 1.00552 1.21193 0.91047 0.99984 1.00274 0.89796 0.89904 0.90220 0.82687 0.84436 0.74815 0.89913 0.91535 0.89410 0.90699 0.96681 0.97762 0.94346 0.96382 0.93993 0.82698 0.79790 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 9.98 71.24 0.71 0.19 16 2 C -0.07 -0.79 5.85 -20.07 -0.12 -0.90 16 3 C -0.09 -1.23 9.58 22.04 0.21 -1.02 16 4 C -0.10 -1.95 9.99 22.38 0.22 -1.73 16 5 C 0.09 2.11 6.61 40.47 0.27 2.38 16 6 N -0.46 -12.19 9.47 -177.76 -1.68 -13.88 16 7 C 0.09 2.48 6.75 42.31 0.29 2.77 16 8 C 0.57 17.01 7.81 86.91 0.68 17.69 16 9 O -0.56 -19.30 16.28 -3.69 -0.06 -19.36 16 10 N -0.70 -20.10 5.49 -465.54 -2.56 -22.65 16 11 C 0.14 4.12 5.13 86.38 0.44 4.56 16 12 C -0.10 -3.22 3.05 -9.40 -0.03 -3.25 16 13 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 14 C -0.12 -4.38 6.42 31.78 0.20 -4.18 16 15 C 0.18 9.18 5.38 86.73 0.47 9.65 16 16 N -0.63 -33.27 3.39 -692.02 -2.35 -35.62 16 17 C -0.24 -14.12 10.27 84.03 0.86 -13.26 16 18 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 19 C -0.07 -3.86 5.48 84.86 0.46 -3.40 16 20 N -0.95 -58.35 10.36 21.65 0.22 -58.13 16 21 Si 0.98 46.64 29.56 68.60 2.03 48.67 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C 0.14 5.76 6.65 86.86 0.58 6.34 16 26 C -0.14 -2.87 9.54 22.36 0.21 -2.66 16 27 C -0.05 -0.75 9.88 22.48 0.22 -0.53 16 28 C -0.09 -1.65 5.75 -21.22 -0.12 -1.77 16 29 C -0.11 -1.23 9.37 22.31 0.21 -1.02 16 30 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.08 0.18 8.07 -2.39 -0.02 0.17 16 32 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.42 11.55 7.78 -92.71 -0.72 10.83 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.05 7.96 -2.39 -0.02 2.03 16 38 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.52 8.04 -2.38 -0.02 2.50 16 40 H 0.01 0.84 7.30 -2.39 -0.02 0.82 16 41 H 0.00 0.24 7.61 -2.38 -0.02 0.22 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.02 0.77 7.90 -2.39 -0.02 0.75 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.16 2.96 7.60 -2.91 -0.02 2.94 16 46 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -75.87 388.78 1.64 -74.23 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.26 Total: 16.86 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.77 Total: 9.87 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.36 Total: -130.28 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.87 1.64 -74.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028679041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.631 kcal (2) G-P(sol) polarization free energy of solvation -75.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds