Wall clock time and date at job start Tue Mar 31 2020 22:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36543 * 120.09211 * 2 1 4 4 C 1.40716 * 118.24197 * 180.02562 * 3 2 1 5 5 C 1.40425 * 121.27785 * 180.20140 * 4 3 2 6 6 C 1.36126 * 119.65110 * 180.26509 * 5 4 3 7 7 C 1.39436 * 120.91801 * 359.49875 * 6 5 4 8 8 C 1.35991 * 121.08873 * 0.28233 * 7 6 5 9 9 C 1.40832 * 119.73831 * 359.97246 * 8 7 6 10 10 N 1.33244 * 120.99992 * 179.97438 * 9 8 7 11 11 C 1.31899 * 121.30108 * 180.02562 * 10 9 8 12 12 C 1.48268 * 119.24140 * 180.02562 * 11 10 9 13 13 O 1.21501 * 120.00341 * 174.06208 * 12 11 10 14 14 N 1.34777 * 120.00042 * 354.05632 * 12 11 10 15 15 C 1.46503 * 120.00307 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47109 * 179.97438 * 15 14 12 17 17 H 1.08999 * 110.64458 * 308.14636 * 16 15 14 18 18 C 1.55159 * 110.72252 * 184.99789 * 16 15 14 19 19 C 1.54907 * 101.58444 * 206.13365 * 18 16 15 20 20 N 1.47431 * 104.82978 * 37.01174 * 19 18 16 21 21 C 1.36941 * 125.64604 * 155.83417 * 20 19 18 22 22 H 1.08000 * 120.00019 * 5.81174 * 21 20 19 23 23 C 1.38807 * 119.99709 * 185.81164 * 21 20 19 24 24 N 1.31625 * 120.00180 * 7.32191 * 23 21 20 25 25 Si 1.86798 * 120.00149 * 187.31927 * 23 21 20 26 26 H 1.48508 * 109.47045 * 84.98996 * 25 23 21 27 27 H 1.48497 * 109.47551 * 204.99396 * 25 23 21 28 28 H 1.48501 * 109.47122 * 324.99554 * 25 23 21 29 29 C 1.47022 * 108.70457 * 335.86855 * 20 19 18 30 30 H 1.09004 * 109.47418 * 262.97899 * 1 2 3 31 31 H 1.08997 * 109.47364 * 22.98051 * 1 2 3 32 32 H 1.08999 * 109.46831 * 142.97920 * 1 2 3 33 33 H 1.07996 * 120.87865 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.17402 * 0.02757 * 5 4 3 35 35 H 1.08005 * 119.54168 * 179.78511 * 6 5 4 36 36 H 1.08004 * 119.45621 * 180.25102 * 7 6 5 37 37 H 1.08006 * 120.13413 * 179.97438 * 8 7 6 38 38 H 0.97005 * 119.99537 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47042 * 299.99970 * 15 14 12 40 40 H 1.08999 * 109.47071 * 60.00221 * 15 14 12 41 41 H 1.08999 * 111.00206 * 324.21119 * 18 16 15 42 42 H 1.09000 * 111.00203 * 88.02186 * 18 16 15 43 43 H 1.09000 * 110.36307 * 155.84262 * 19 18 16 44 44 H 1.08988 * 110.37073 * 278.17271 * 19 18 16 45 45 H 0.97005 * 119.99712 * 179.97438 * 24 23 21 46 46 H 1.08994 * 109.88063 * 241.64295 * 29 20 19 47 47 H 1.09004 * 109.88049 * 120.47520 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0006 5 6 4.3654 2.3120 0.0036 6 6 5.7242 2.2294 -0.0025 7 6 6.3668 0.9920 -0.0025 8 6 5.6569 -0.1679 -0.0020 9 6 4.2492 -0.1254 -0.0010 10 7 3.5288 -1.2463 -0.0011 11 6 2.2102 -1.2134 -0.0006 12 6 1.4539 -2.4887 -0.0002 13 8 0.2438 -2.4774 0.1091 14 7 2.1086 -3.6605 -0.1210 15 6 1.3613 -4.9206 -0.1211 16 6 2.3351 -6.0911 -0.2711 17 1 2.9907 -5.9381 -1.1284 18 6 1.5658 -7.4322 -0.4006 19 6 2.6091 -8.4426 0.1379 20 7 3.2856 -7.7351 1.2403 21 6 3.9274 -8.3283 2.2946 22 1 4.0486 -9.4012 2.3184 23 6 4.4220 -7.5507 3.3325 24 7 4.1507 -6.2635 3.3776 25 14 5.4728 -8.3308 4.6654 26 1 6.8875 -8.3783 4.2161 27 1 5.3749 -7.5243 5.9084 28 1 4.9914 -9.7103 4.9312 29 6 3.1563 -6.2871 1.0208 30 1 -0.3634 -0.1256 1.0200 31 1 -0.3634 0.9461 -0.4012 32 1 -0.3633 -0.8205 -0.6188 33 1 1.6675 2.1257 -0.0004 34 1 3.8802 3.2768 0.0078 35 1 6.3127 3.1351 -0.0028 36 1 7.4462 0.9540 -0.0033 37 1 6.1705 -1.1180 -0.0024 38 1 3.0747 -3.6695 -0.2080 39 1 0.8156 -5.0194 0.8173 40 1 0.6572 -4.9254 -0.9531 41 1 0.6688 -7.4294 0.2186 42 1 1.3189 -7.6420 -1.4414 43 1 2.1124 -9.3385 0.5104 44 1 3.3247 -8.7013 -0.6425 45 1 4.4961 -5.7201 4.1031 46 1 4.1436 -5.8404 0.9039 47 1 2.6373 -5.8294 1.8630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028698980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:28 Heat of formation + Delta-G solvation = 43.893945 kcal Electronic energy + Delta-G solvation = -28686.257421 eV Core-core repulsion = 24834.393034 eV Total energy + Delta-G solvation = -3851.864387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23353 -39.45588 -37.72694 -36.99751 -34.87494 -33.99035 -32.45765 -31.79037 -30.74135 -29.73448 -27.95311 -27.16381 -25.99314 -24.94352 -23.40181 -22.66688 -22.25258 -20.87278 -20.07316 -19.65762 -18.23297 -17.95230 -16.91821 -16.73111 -15.83039 -15.54915 -15.43704 -15.06648 -14.66674 -14.56412 -14.31868 -14.10376 -13.83369 -13.59101 -13.27569 -13.18789 -13.13551 -12.74872 -12.41489 -12.23680 -11.86068 -11.80717 -11.74050 -11.70636 -11.58733 -11.47290 -10.85002 -10.76856 -10.55735 -10.45688 -10.05842 -10.04487 -9.92018 -9.86124 -9.59046 -9.37851 -8.96419 -8.65611 -8.57303 -8.42922 -6.78280 -5.65948 -3.02265 0.03470 0.50158 1.75343 2.34129 3.20142 3.28075 3.42406 3.47209 3.49196 3.93512 4.00688 4.32954 4.51764 4.53307 4.54413 4.70553 4.87278 4.91784 5.07802 5.15497 5.23611 5.42261 5.44178 5.45197 5.55441 5.57443 5.71998 5.73169 5.74857 5.80013 5.90648 5.97687 6.08419 6.11256 6.13253 6.16589 6.21175 6.34532 6.38139 6.46345 6.61161 6.63179 6.69274 6.76021 6.98232 7.47850 7.49181 7.67364 7.82582 7.85544 8.30784 8.36448 9.24643 9.86251 10.52557 11.43067 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003056 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.766572 B = 9159.783797 C =10854.853319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.075 4.075 4 C -0.082 4.082 5 C -0.106 4.106 6 C -0.107 4.107 7 C -0.111 4.111 8 C -0.078 4.078 9 C 0.118 3.882 10 N -0.433 5.433 11 C 0.119 3.881 12 C 0.565 3.435 13 O -0.533 6.533 14 N -0.695 5.695 15 C 0.135 3.865 16 C -0.131 4.131 17 H 0.071 0.929 18 C -0.122 4.122 19 C 0.133 3.867 20 N -0.606 5.606 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.179 3.821 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.018 0.982 45 H 0.252 0.748 46 H 0.026 0.974 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 18.332 -10.652 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.101 4.101 4 C -0.084 4.084 5 C -0.125 4.125 6 C -0.125 4.125 7 C -0.131 4.131 8 C -0.096 4.096 9 C -0.006 4.006 10 N -0.144 5.144 11 C -0.035 4.035 12 C 0.350 3.650 13 O -0.411 6.411 14 N -0.345 5.345 15 C 0.012 3.988 16 C -0.151 4.151 17 H 0.089 0.911 18 C -0.161 4.161 19 C 0.007 3.993 20 N -0.332 5.332 21 C -0.358 4.358 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.054 3.946 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.249 0.751 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.944 17.558 -10.361 20.480 hybrid contribution 0.867 0.503 0.808 1.287 sum -1.078 18.061 -9.553 20.461 Atomic orbital electron populations 1.21070 0.88781 1.03112 1.04212 1.20560 0.98590 0.92068 0.97542 1.21323 0.92387 0.98389 0.97951 1.18964 0.94231 0.94549 1.00664 1.20960 0.94095 0.97000 1.00430 1.20988 0.94643 0.98072 0.98764 1.20923 1.00573 0.91975 0.99606 1.20967 0.91107 0.99728 0.97830 1.18857 0.94232 0.87636 0.99853 1.67861 1.06503 1.30649 1.09368 1.21291 0.89557 0.93986 0.98664 1.17839 0.86629 0.83051 0.77518 1.90711 1.13084 1.86671 1.50603 1.45912 1.12084 1.05326 1.71196 1.21457 0.94060 0.81294 1.02002 1.22736 0.97533 0.93406 1.01425 0.91069 1.22695 0.98563 0.94981 0.99827 1.21568 0.92450 0.94465 0.90855 1.44485 1.63710 1.01333 1.23708 1.19034 1.28505 0.91712 0.96526 0.90522 1.24803 1.01370 0.95933 0.98333 1.69945 1.48531 1.04730 1.33266 0.86166 0.80420 0.78099 0.81249 1.21627 1.21762 1.20759 1.21287 0.96428 0.85350 0.91498 0.90335 0.92440 0.88124 0.83883 0.85189 0.85472 0.85095 0.84142 0.75057 0.90848 0.91866 0.91359 0.92026 0.94213 0.96431 0.93807 0.95552 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.67 36.00 0.31 -1.01 16 2 C -0.08 -1.09 5.89 -104.48 -0.62 -1.71 16 3 C -0.07 -0.80 9.50 -39.26 -0.37 -1.17 16 4 C -0.08 -0.95 5.75 -106.72 -0.61 -1.56 16 5 C -0.11 -0.93 9.77 -39.52 -0.39 -1.31 16 6 C -0.11 -0.85 9.95 -39.89 -0.40 -1.25 16 7 C -0.11 -0.99 9.94 -39.94 -0.40 -1.39 16 8 C -0.08 -0.90 9.99 -39.41 -0.39 -1.29 16 9 C 0.12 1.61 6.61 -84.85 -0.56 1.04 16 10 N -0.43 -6.69 9.48 -7.54 -0.07 -6.76 16 11 C 0.12 1.82 6.75 -82.96 -0.56 1.27 16 12 C 0.57 9.49 7.74 -12.14 -0.09 9.39 16 13 O -0.53 -9.54 13.23 5.36 0.07 -9.47 16 14 N -0.70 -11.61 5.46 -61.11 -0.33 -11.94 16 15 C 0.14 2.27 5.02 -4.04 -0.02 2.25 16 16 C -0.13 -2.38 2.96 -88.78 -0.26 -2.64 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 18 C -0.12 -2.09 6.53 -24.58 -0.16 -2.25 16 19 C 0.13 2.75 7.23 -2.53 -0.02 2.73 16 20 N -0.61 -15.61 3.39 -170.07 -0.58 -16.19 16 21 C -0.23 -6.47 10.26 -15.06 -0.15 -6.63 16 22 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 23 C -0.01 -0.22 5.45 -17.43 -0.09 -0.32 16 24 N -0.92 -27.21 10.46 55.49 0.58 -26.63 16 25 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 C 0.18 4.29 4.96 -3.06 -0.02 4.27 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.49 8.04 -51.93 -0.42 0.08 16 32 H 0.10 1.33 5.82 -51.93 -0.30 1.02 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.41 6.86 7.79 -40.82 -0.32 6.54 16 39 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.02 0.36 8.14 -51.94 -0.42 -0.06 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.03 0.69 7.98 -51.93 -0.41 0.28 16 47 H 0.07 1.80 6.42 -51.93 -0.33 1.47 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -32.95 383.18 -11.20 -44.14 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.81 Total: 5.27 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -4.80 Total: -1.58 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.40 Total: -61.51 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.95 -11.20 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028698980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.038 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds