Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36543 * 120.09211 * 2 1 4 4 C 1.40716 * 118.24197 * 180.02562 * 3 2 1 5 5 C 1.40425 * 121.27785 * 180.20140 * 4 3 2 6 6 C 1.36126 * 119.65110 * 180.26509 * 5 4 3 7 7 C 1.39436 * 120.91801 * 359.49875 * 6 5 4 8 8 C 1.35991 * 121.08873 * 0.28233 * 7 6 5 9 9 C 1.40832 * 119.73831 * 359.97246 * 8 7 6 10 10 N 1.33244 * 120.99992 * 179.97438 * 9 8 7 11 11 C 1.31899 * 121.30108 * 180.02562 * 10 9 8 12 12 C 1.48268 * 119.24140 * 180.02562 * 11 10 9 13 13 O 1.21501 * 120.00341 * 174.06208 * 12 11 10 14 14 N 1.34777 * 120.00042 * 354.05632 * 12 11 10 15 15 C 1.46503 * 120.00307 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47109 * 179.97438 * 15 14 12 17 17 H 1.08999 * 110.64458 * 308.14636 * 16 15 14 18 18 C 1.55159 * 110.72252 * 184.99789 * 16 15 14 19 19 C 1.54907 * 101.58444 * 206.13365 * 18 16 15 20 20 N 1.47431 * 104.82978 * 37.01174 * 19 18 16 21 21 C 1.36941 * 125.64604 * 155.83417 * 20 19 18 22 22 H 1.08000 * 120.00019 * 5.81174 * 21 20 19 23 23 C 1.38807 * 119.99709 * 185.81164 * 21 20 19 24 24 N 1.31625 * 120.00180 * 7.32191 * 23 21 20 25 25 Si 1.86798 * 120.00149 * 187.31927 * 23 21 20 26 26 H 1.48508 * 109.47045 * 84.98996 * 25 23 21 27 27 H 1.48497 * 109.47551 * 204.99396 * 25 23 21 28 28 H 1.48501 * 109.47122 * 324.99554 * 25 23 21 29 29 C 1.47022 * 108.70457 * 335.86855 * 20 19 18 30 30 H 1.09004 * 109.47418 * 262.97899 * 1 2 3 31 31 H 1.08997 * 109.47364 * 22.98051 * 1 2 3 32 32 H 1.08999 * 109.46831 * 142.97920 * 1 2 3 33 33 H 1.07996 * 120.87865 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.17402 * 0.02757 * 5 4 3 35 35 H 1.08005 * 119.54168 * 179.78511 * 6 5 4 36 36 H 1.08004 * 119.45621 * 180.25102 * 7 6 5 37 37 H 1.08006 * 120.13413 * 179.97438 * 8 7 6 38 38 H 0.97005 * 119.99537 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47042 * 299.99970 * 15 14 12 40 40 H 1.08999 * 109.47071 * 60.00221 * 15 14 12 41 41 H 1.08999 * 111.00206 * 324.21119 * 18 16 15 42 42 H 1.09000 * 111.00203 * 88.02186 * 18 16 15 43 43 H 1.09000 * 110.36307 * 155.84262 * 19 18 16 44 44 H 1.08988 * 110.37073 * 278.17271 * 19 18 16 45 45 H 0.97005 * 119.99712 * 179.97438 * 24 23 21 46 46 H 1.08994 * 109.88063 * 241.64295 * 29 20 19 47 47 H 1.09004 * 109.88049 * 120.47520 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0006 5 6 4.3654 2.3120 0.0036 6 6 5.7242 2.2294 -0.0025 7 6 6.3668 0.9920 -0.0025 8 6 5.6569 -0.1679 -0.0020 9 6 4.2492 -0.1254 -0.0010 10 7 3.5288 -1.2463 -0.0011 11 6 2.2102 -1.2134 -0.0006 12 6 1.4539 -2.4887 -0.0002 13 8 0.2438 -2.4774 0.1091 14 7 2.1086 -3.6605 -0.1210 15 6 1.3613 -4.9206 -0.1211 16 6 2.3351 -6.0911 -0.2711 17 1 2.9907 -5.9381 -1.1284 18 6 1.5658 -7.4322 -0.4006 19 6 2.6091 -8.4426 0.1379 20 7 3.2856 -7.7351 1.2403 21 6 3.9274 -8.3283 2.2946 22 1 4.0486 -9.4012 2.3184 23 6 4.4220 -7.5507 3.3325 24 7 4.1507 -6.2635 3.3776 25 14 5.4728 -8.3308 4.6654 26 1 6.8875 -8.3783 4.2161 27 1 5.3749 -7.5243 5.9084 28 1 4.9914 -9.7103 4.9312 29 6 3.1563 -6.2871 1.0208 30 1 -0.3634 -0.1256 1.0200 31 1 -0.3634 0.9461 -0.4012 32 1 -0.3633 -0.8205 -0.6188 33 1 1.6675 2.1257 -0.0004 34 1 3.8802 3.2768 0.0078 35 1 6.3127 3.1351 -0.0028 36 1 7.4462 0.9540 -0.0033 37 1 6.1705 -1.1180 -0.0024 38 1 3.0747 -3.6695 -0.2080 39 1 0.8156 -5.0194 0.8173 40 1 0.6572 -4.9254 -0.9531 41 1 0.6688 -7.4294 0.2186 42 1 1.3189 -7.6420 -1.4414 43 1 2.1124 -9.3385 0.5104 44 1 3.3247 -8.7013 -0.6425 45 1 4.4961 -5.7201 4.1031 46 1 4.1436 -5.8404 0.9039 47 1 2.6373 -5.8294 1.8630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028698980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = 23.452540 kcal Electronic energy + Delta-G solvation = -28687.143827 eV Core-core repulsion = 24834.393034 eV Total energy + Delta-G solvation = -3852.750793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.18004 -40.66299 -39.31292 -37.96200 -36.22654 -35.11167 -34.31904 -32.64582 -32.01517 -31.12276 -29.61510 -28.09522 -27.53163 -26.37808 -24.94626 -23.55355 -23.03374 -22.30608 -21.62006 -21.25945 -19.32665 -18.95878 -18.80700 -17.70557 -17.30459 -16.81389 -16.66078 -16.43606 -16.06474 -15.62201 -15.46449 -15.33468 -15.28352 -14.76201 -14.37831 -14.32451 -14.21513 -13.96933 -13.88252 -13.49047 -13.37632 -13.20903 -13.14506 -12.75397 -12.69101 -12.62634 -12.59343 -12.49039 -12.04427 -11.92996 -11.84979 -11.57679 -11.39682 -11.38337 -11.11416 -10.73707 -10.48625 -10.15527 -9.69912 -9.22568 -8.88286 -7.83099 -5.21883 -0.85816 -0.36063 0.90755 1.36824 1.43196 1.45799 1.53851 2.03267 2.19070 2.48780 2.95478 3.06500 3.31905 3.51852 3.60437 3.65828 3.71889 3.84545 3.90590 3.96773 4.05768 4.09805 4.20879 4.35438 4.39623 4.47774 4.59832 4.61675 4.65043 4.76145 4.84447 4.85380 4.88583 4.93259 5.02796 5.05246 5.09232 5.15772 5.25319 5.36579 5.38591 5.42516 5.46303 5.49283 5.58152 5.60984 5.79787 5.86264 6.21270 6.33405 6.67218 7.06075 7.08998 7.78530 8.42928 9.23731 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003056 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.766572 B = 9159.783797 C =10854.853319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.057 4.057 4 C -0.095 4.095 5 C -0.101 4.101 6 C -0.102 4.102 7 C -0.095 4.095 8 C -0.113 4.113 9 C 0.090 3.910 10 N -0.464 5.464 11 C 0.091 3.909 12 C 0.561 3.439 13 O -0.550 6.550 14 N -0.700 5.700 15 C 0.144 3.856 16 C -0.114 4.114 17 H 0.089 0.911 18 C -0.107 4.107 19 C 0.124 3.876 20 N -0.631 5.631 21 C -0.243 4.243 22 H 0.082 0.918 23 C -0.067 4.067 24 N -0.947 5.947 25 Si 0.976 3.024 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.267 1.267 29 C 0.192 3.808 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.186 0.814 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.411 0.589 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.044 0.956 44 H 0.031 0.969 45 H 0.243 0.757 46 H -0.011 1.011 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 20.602 -11.972 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.108 4.108 3 C -0.082 4.082 4 C -0.097 4.097 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.132 4.132 9 C -0.034 4.034 10 N -0.175 5.175 11 C -0.062 4.062 12 C 0.347 3.653 13 O -0.429 6.429 14 N -0.350 5.350 15 C 0.021 3.979 16 C -0.133 4.133 17 H 0.107 0.893 18 C -0.146 4.146 19 C -0.001 4.001 20 N -0.357 5.357 21 C -0.372 4.372 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.595 5.595 25 Si 0.805 3.195 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.192 1.192 29 C 0.067 3.933 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.203 0.797 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.147 0.853 38 H 0.247 0.753 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.007 0.993 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.616 19.791 -11.713 23.054 hybrid contribution 0.897 -0.123 1.196 1.500 sum -0.718 19.668 -10.517 22.315 Atomic orbital electron populations 1.20969 0.88016 1.04048 1.03313 1.20726 0.99212 0.91999 0.98855 1.21769 0.92162 0.99080 0.95226 1.19299 0.95026 0.94747 1.00626 1.21404 0.94437 0.97282 0.98812 1.21475 0.94848 0.98838 0.96780 1.21330 1.01913 0.91531 0.96729 1.21063 0.90765 1.00671 1.00674 1.19285 0.95048 0.88280 1.00820 1.67748 1.06851 1.32385 1.10525 1.21189 0.89869 0.94041 1.01066 1.18215 0.86658 0.83663 0.76809 1.90687 1.13716 1.87123 1.51395 1.45952 1.11955 1.05536 1.71525 1.21320 0.93842 0.81052 1.01682 1.22559 0.97331 0.94782 0.98659 0.89255 1.22675 0.97107 0.92496 1.02321 1.21826 0.93309 0.95234 0.89728 1.44856 1.64029 1.02466 1.24396 1.19452 1.28291 0.92211 0.97274 0.89973 1.25666 1.03011 0.96490 1.00868 1.70205 1.49647 1.06036 1.33660 0.85124 0.78670 0.77672 0.78072 1.21190 1.22356 1.19215 1.20964 0.94882 0.84385 0.93101 0.91366 0.89018 0.90322 0.79699 0.81462 0.81572 0.82470 0.85325 0.75325 0.93327 0.89313 0.91429 0.87489 0.93756 0.95136 0.94748 0.99263 0.95675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 8.67 71.23 0.62 -1.81 16 2 C -0.10 -2.72 5.89 -19.77 -0.12 -2.84 16 3 C -0.06 -1.11 9.50 22.48 0.21 -0.90 16 4 C -0.09 -2.05 5.75 -21.22 -0.12 -2.17 16 5 C -0.10 -1.38 9.77 22.31 0.22 -1.16 16 6 C -0.10 -1.22 9.95 22.07 0.22 -1.00 16 7 C -0.10 -1.51 9.94 22.04 0.22 -1.29 16 8 C -0.11 -2.70 9.99 22.38 0.22 -2.47 16 9 C 0.09 2.52 6.61 40.48 0.27 2.79 16 10 N -0.46 -15.43 9.48 -177.77 -1.69 -17.12 16 11 C 0.09 2.96 6.75 42.29 0.29 3.25 16 12 C 0.56 20.15 7.74 86.91 0.67 20.83 16 13 O -0.55 -20.81 13.23 -3.72 -0.05 -20.86 16 14 N -0.70 -25.03 5.46 -465.56 -2.54 -27.57 16 15 C 0.14 5.01 5.02 86.38 0.43 5.45 16 16 C -0.11 -4.15 2.96 -9.60 -0.03 -4.18 16 17 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 18 C -0.11 -3.51 6.53 31.99 0.21 -3.31 16 19 C 0.12 5.03 7.23 86.85 0.63 5.66 16 20 N -0.63 -33.38 3.39 -691.99 -2.35 -35.72 16 21 C -0.24 -14.06 10.26 84.03 0.86 -13.20 16 22 H 0.08 4.52 7.84 -2.91 -0.02 4.50 16 23 C -0.07 -3.96 5.45 84.86 0.46 -3.50 16 24 N -0.95 -59.20 10.46 21.65 0.23 -58.98 16 25 Si 0.98 47.25 29.56 68.60 2.03 49.28 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 29 C 0.19 9.68 4.96 86.73 0.43 10.11 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 32 H 0.08 2.14 5.82 -2.39 -0.01 2.13 16 33 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 35 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.41 14.94 7.79 -92.70 -0.72 14.21 16 39 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 40 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 42 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.24 14.95 8.31 -92.70 -0.77 14.18 16 46 H -0.01 -0.61 7.98 -2.39 -0.02 -0.63 16 47 H 0.03 1.47 6.42 -2.39 -0.02 1.45 16 Total: -1.00 -78.00 383.18 1.59 -76.41 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.27 Total: 24.30 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.70 Total: 10.27 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -6.35 Total: -139.39 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -78.00 1.59 -76.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028698980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.860 kcal (2) G-P(sol) polarization free energy of solvation -77.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds