Wall clock time and date at job start Tue Mar 31 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36349 * 119.95992 * 2 1 4 4 C 1.38865 * 121.05709 * 180.27957 * 3 2 1 5 5 C 1.38754 * 120.72318 * 359.40915 * 4 3 2 6 6 C 1.47438 * 120.32991 * 180.30166 * 5 4 3 7 7 O 1.21596 * 120.00117 * 180.28266 * 6 5 4 8 8 N 1.34775 * 119.99799 * 0.27806 * 6 5 4 9 9 C 1.46507 * 119.99747 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46786 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.64639 * 305.69623 * 10 9 8 12 12 C 1.55158 * 110.71490 * 182.55691 * 10 9 8 13 13 C 1.54914 * 101.58120 * 206.13580 * 12 10 9 14 14 N 1.47425 * 104.83011 * 37.00966 * 13 12 10 15 15 C 1.36937 * 125.64289 * 155.90016 * 14 13 12 16 16 H 1.08007 * 119.99421 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00364 * 359.97438 * 15 14 13 18 18 N 1.31613 * 120.00072 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99715 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47255 * 60.00331 * 19 17 15 21 21 H 1.48503 * 109.46976 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47767 * 299.99995 * 19 17 15 23 23 C 1.47314 * 108.73845 * 335.71781 * 14 13 12 24 24 C 1.41775 * 119.33545 * 0.57920 * 5 4 3 25 25 N 1.33354 * 121.05259 * 179.70580 * 24 5 4 26 26 C 1.31220 * 121.35180 * 180.02562 * 25 24 5 27 27 C 1.39235 * 121.69605 * 359.97438 * 26 25 24 28 28 C 1.36625 * 119.91144 * 0.02562 * 27 26 25 29 29 C 1.40443 * 119.95542 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47148 * 90.00195 * 1 2 3 31 31 H 1.08999 * 109.47282 * 209.99970 * 1 2 3 32 32 H 1.08998 * 109.46923 * 330.00180 * 1 2 3 33 33 H 1.08002 * 119.46807 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.63868 * 179.71943 * 4 3 2 35 35 H 0.97004 * 120.00667 * 0.02562 * 8 6 5 36 36 H 1.08993 * 109.46813 * 299.99881 * 9 8 6 37 37 H 1.08996 * 109.46873 * 59.99988 * 9 8 6 38 38 H 1.08994 * 111.00761 * 324.21235 * 12 10 9 39 39 H 1.09008 * 111.00335 * 88.02897 * 12 10 9 40 40 H 1.09000 * 110.36617 * 155.85348 * 13 12 10 41 41 H 1.09001 * 110.36713 * 278.06269 * 13 12 10 42 42 H 0.96996 * 120.00103 * 180.02562 * 18 17 15 43 43 H 1.08995 * 110.06218 * 241.87237 * 23 14 13 44 44 H 1.09006 * 109.85103 * 120.60840 * 23 14 13 45 45 H 1.08005 * 119.15548 * 179.97438 * 26 25 24 46 46 H 1.08007 * 120.04384 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.92634 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1813 0.0000 4 6 3.5763 1.2079 -0.0058 5 6 4.3080 0.0289 0.0005 6 6 5.7818 0.0673 0.0010 7 8 6.4171 -0.9695 0.0014 8 7 6.4251 1.2517 0.0009 9 6 7.8896 1.2898 0.0019 10 6 8.3618 2.7451 0.0009 11 1 7.9149 3.2936 -0.8282 12 6 9.9103 2.8197 -0.0627 13 6 10.1839 4.1868 0.6126 14 7 9.1824 4.2824 1.6902 15 6 9.2986 5.0442 2.8222 16 1 8.5054 5.0465 3.5553 17 6 10.4357 5.8135 3.0275 18 7 11.4024 5.8104 2.1344 19 14 10.5936 6.8532 4.5714 20 1 10.5336 5.9753 5.7677 21 1 11.8917 7.5743 4.5519 22 1 9.4817 7.8360 4.6224 23 6 8.0339 3.4265 1.3463 24 6 3.6241 -1.2130 0.0006 25 7 4.2930 -2.3666 0.0007 26 6 3.6660 -3.5193 0.0002 27 6 2.2757 -3.5959 0.0001 28 6 1.5303 -2.4509 0.0000 29 6 2.2083 -1.2168 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6386 2.1112 -0.0004 34 1 4.0923 2.1566 -0.0103 35 1 5.9184 2.0789 0.0009 36 1 8.2655 0.7861 0.8924 37 1 8.2668 0.7852 -0.8875 38 1 10.3642 2.0064 0.5034 39 1 10.2595 2.8166 -1.0954 40 1 11.1915 4.2099 1.0278 41 1 10.0510 4.9972 -0.1041 42 1 12.1971 6.3476 2.2781 43 1 7.1333 4.0321 1.2452 44 1 7.8905 2.6712 2.1191 45 1 4.2431 -4.4322 -0.0001 46 1 1.7872 -4.5592 -0.0007 47 1 0.4511 -2.4912 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028699898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:19 Heat of formation + Delta-G solvation = 49.289744 kcal Electronic energy + Delta-G solvation = -28262.871052 eV Core-core repulsion = 24411.240644 eV Total energy + Delta-G solvation = -3851.630408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31038 -39.34148 -37.62389 -37.42095 -34.54472 -34.35705 -32.50882 -31.46548 -30.86463 -29.79847 -28.50291 -27.49528 -25.45951 -24.60267 -23.96904 -23.47499 -22.12834 -20.46420 -19.86100 -19.57790 -18.46875 -17.85407 -17.34468 -16.80355 -15.91615 -15.76229 -15.35369 -15.00863 -14.75085 -14.65323 -14.32566 -14.22811 -14.06541 -13.65519 -13.65208 -13.49486 -13.12588 -12.73047 -12.59905 -12.47272 -12.22913 -11.75452 -11.72769 -11.62101 -11.55419 -11.43318 -10.93619 -10.77497 -10.67052 -10.37975 -10.14173 -10.03011 -9.94982 -9.77511 -9.51956 -9.23826 -9.11540 -8.85592 -8.63061 -8.41966 -6.81605 -5.63487 -3.05085 -0.13784 0.52339 1.48424 2.45698 3.21919 3.25571 3.41557 3.45633 3.47051 3.93741 4.01864 4.17678 4.32792 4.45115 4.48354 4.50395 4.66968 4.71986 4.91447 4.99784 5.08887 5.11130 5.21543 5.31482 5.32487 5.42963 5.47496 5.55346 5.59984 5.64489 5.71476 5.75635 5.85516 5.93564 6.03272 6.13646 6.16264 6.20303 6.38371 6.48144 6.53798 6.58425 6.62761 6.77491 6.94572 7.53605 7.63648 7.64298 7.80928 7.87896 8.38521 8.42419 9.24027 9.84814 10.50072 11.40427 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002222 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.929637 B =12599.903078 C =13394.248995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.041 4.041 3 C -0.128 4.128 4 C -0.057 4.057 5 C -0.111 4.111 6 C 0.550 3.450 7 O -0.503 6.503 8 N -0.726 5.726 9 C 0.135 3.865 10 C -0.115 4.115 11 H 0.075 0.925 12 C -0.135 4.135 13 C 0.152 3.848 14 N -0.605 5.605 15 C -0.223 4.223 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.141 3.859 24 C 0.165 3.835 25 N -0.436 5.436 26 C 0.131 3.869 27 C -0.176 4.176 28 C -0.061 4.061 29 C -0.109 4.109 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.397 0.603 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.011 0.989 42 H 0.252 0.748 43 H 0.018 0.982 44 H 0.025 0.975 45 H 0.160 0.840 46 H 0.137 0.863 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.525 -14.980 -7.967 29.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.042 4.042 3 C -0.146 4.146 4 C -0.078 4.078 5 C -0.115 4.115 6 C 0.336 3.664 7 O -0.378 6.378 8 N -0.379 5.379 9 C 0.012 3.988 10 C -0.134 4.134 11 H 0.094 0.906 12 C -0.174 4.174 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.015 3.985 24 C 0.042 3.958 25 N -0.143 5.143 26 C -0.042 4.042 27 C -0.196 4.196 28 C -0.087 4.087 29 C -0.111 4.111 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.177 0.823 46 H 0.155 0.845 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.926 -15.449 -7.857 27.949 hybrid contribution -1.179 1.016 0.766 1.735 sum -23.105 -14.433 -7.091 28.151 Atomic orbital electron populations 1.20925 0.90386 1.03526 1.02982 1.19886 0.96300 0.91963 0.96084 1.20727 0.93830 0.98110 1.01927 1.21488 0.94291 0.97486 0.94498 1.19953 0.93848 0.91958 1.05757 1.17894 0.86561 0.84056 0.77906 1.90842 1.67377 1.32233 1.47300 1.46028 1.08180 1.07946 1.75719 1.21438 0.78194 0.97013 1.02153 1.22447 0.98327 0.93576 0.99037 0.90646 1.23004 0.92648 1.01616 1.00153 1.21926 0.97279 0.89495 0.88572 1.44569 1.15895 1.51574 1.21042 1.19034 1.02057 1.18227 0.95792 0.90621 1.24786 0.96819 1.00472 0.98651 1.69783 1.08517 1.44131 1.34712 0.86151 0.76904 0.79970 0.82460 1.21168 1.21565 1.21257 1.21389 0.91387 0.92905 0.92845 1.18599 0.88831 0.91996 0.96353 1.68351 1.38790 0.97223 1.09907 1.23205 0.91886 0.96462 0.92646 1.21968 0.95701 0.99570 1.02402 1.21484 1.00430 0.91261 0.95511 1.18672 0.93754 0.94367 1.04345 0.90340 0.91020 0.90606 0.84698 0.84513 0.76834 0.91193 0.91617 0.91803 0.92124 0.87539 0.97054 0.93684 0.96448 0.95676 0.82291 0.84472 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.53 36.01 0.34 -0.24 16 2 C -0.04 -0.34 5.89 -104.47 -0.62 -0.96 16 3 C -0.13 -1.05 9.57 -40.03 -0.38 -1.43 16 4 C -0.06 -0.57 9.52 -39.16 -0.37 -0.94 16 5 C -0.11 -1.50 5.91 -104.61 -0.62 -2.12 16 6 C 0.55 8.76 7.76 -12.51 -0.10 8.66 16 7 O -0.50 -9.82 15.19 5.28 0.08 -9.74 16 8 N -0.73 -10.25 5.38 -61.38 -0.33 -10.58 16 9 C 0.14 2.12 5.00 -4.04 -0.02 2.10 16 10 C -0.11 -1.95 2.98 -88.78 -0.26 -2.21 16 11 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 12 C -0.13 -2.55 6.54 -24.58 -0.16 -2.71 16 13 C 0.15 3.71 5.89 -2.53 -0.01 3.69 16 14 N -0.60 -15.60 3.40 -169.83 -0.58 -16.18 16 15 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 16 H 0.08 2.06 7.83 -52.48 -0.41 1.64 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 C 0.14 2.90 6.66 -2.90 -0.02 2.88 16 24 C 0.17 2.26 6.61 -84.58 -0.56 1.70 16 25 N -0.44 -6.39 8.44 -10.76 -0.09 -6.48 16 26 C 0.13 1.36 11.15 -17.44 -0.19 1.16 16 27 C -0.18 -1.34 10.03 -39.79 -0.40 -1.74 16 28 C -0.06 -0.48 9.36 -39.19 -0.37 -0.84 16 29 C -0.11 -1.13 5.74 -106.82 -0.61 -1.75 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.27 6.42 -51.93 -0.33 -0.06 16 32 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 1.07 6.37 -52.49 -0.33 0.74 16 35 H 0.40 4.65 6.42 -40.82 -0.26 4.39 16 36 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 39 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 40 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.03 0.53 7.73 -51.93 -0.40 0.13 16 45 H 0.16 1.23 8.06 -52.48 -0.42 0.80 16 46 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 47 H 0.14 0.64 6.42 -52.49 -0.34 0.30 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -35.93 379.77 -10.84 -46.77 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.58 Total: 1.41 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -4.60 Total: -1.60 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.44 Total: -59.78 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.93 -10.84 -46.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028699898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.059 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds