Wall clock time and date at job start Tue Mar 31 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36349 * 119.95992 * 2 1 4 4 C 1.38865 * 121.05709 * 180.27957 * 3 2 1 5 5 C 1.38754 * 120.72318 * 359.40915 * 4 3 2 6 6 C 1.47438 * 120.32991 * 180.30166 * 5 4 3 7 7 O 1.21596 * 120.00117 * 180.28266 * 6 5 4 8 8 N 1.34775 * 119.99799 * 0.27806 * 6 5 4 9 9 C 1.46507 * 119.99747 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46786 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.64639 * 305.69623 * 10 9 8 12 12 C 1.55158 * 110.71490 * 182.55691 * 10 9 8 13 13 C 1.54914 * 101.58120 * 206.13580 * 12 10 9 14 14 N 1.47425 * 104.83011 * 37.00966 * 13 12 10 15 15 C 1.36937 * 125.64289 * 155.90016 * 14 13 12 16 16 H 1.08007 * 119.99421 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00364 * 359.97438 * 15 14 13 18 18 N 1.31613 * 120.00072 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99715 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47255 * 60.00331 * 19 17 15 21 21 H 1.48503 * 109.46976 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47767 * 299.99995 * 19 17 15 23 23 C 1.47314 * 108.73845 * 335.71781 * 14 13 12 24 24 C 1.41775 * 119.33545 * 0.57920 * 5 4 3 25 25 N 1.33354 * 121.05259 * 179.70580 * 24 5 4 26 26 C 1.31220 * 121.35180 * 180.02562 * 25 24 5 27 27 C 1.39235 * 121.69605 * 359.97438 * 26 25 24 28 28 C 1.36625 * 119.91144 * 0.02562 * 27 26 25 29 29 C 1.40443 * 119.95542 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47148 * 90.00195 * 1 2 3 31 31 H 1.08999 * 109.47282 * 209.99970 * 1 2 3 32 32 H 1.08998 * 109.46923 * 330.00180 * 1 2 3 33 33 H 1.08002 * 119.46807 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.63868 * 179.71943 * 4 3 2 35 35 H 0.97004 * 120.00667 * 0.02562 * 8 6 5 36 36 H 1.08993 * 109.46813 * 299.99881 * 9 8 6 37 37 H 1.08996 * 109.46873 * 59.99988 * 9 8 6 38 38 H 1.08994 * 111.00761 * 324.21235 * 12 10 9 39 39 H 1.09008 * 111.00335 * 88.02897 * 12 10 9 40 40 H 1.09000 * 110.36617 * 155.85348 * 13 12 10 41 41 H 1.09001 * 110.36713 * 278.06269 * 13 12 10 42 42 H 0.96996 * 120.00103 * 180.02562 * 18 17 15 43 43 H 1.08995 * 110.06218 * 241.87237 * 23 14 13 44 44 H 1.09006 * 109.85103 * 120.60840 * 23 14 13 45 45 H 1.08005 * 119.15548 * 179.97438 * 26 25 24 46 46 H 1.08007 * 120.04384 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.92634 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1813 0.0000 4 6 3.5763 1.2079 -0.0058 5 6 4.3080 0.0289 0.0005 6 6 5.7818 0.0673 0.0010 7 8 6.4171 -0.9695 0.0014 8 7 6.4251 1.2517 0.0009 9 6 7.8896 1.2898 0.0019 10 6 8.3618 2.7451 0.0009 11 1 7.9149 3.2936 -0.8282 12 6 9.9103 2.8197 -0.0627 13 6 10.1839 4.1868 0.6126 14 7 9.1824 4.2824 1.6902 15 6 9.2986 5.0442 2.8222 16 1 8.5054 5.0465 3.5553 17 6 10.4357 5.8135 3.0275 18 7 11.4024 5.8104 2.1344 19 14 10.5936 6.8532 4.5714 20 1 10.5336 5.9753 5.7677 21 1 11.8917 7.5743 4.5519 22 1 9.4817 7.8360 4.6224 23 6 8.0339 3.4265 1.3463 24 6 3.6241 -1.2130 0.0006 25 7 4.2930 -2.3666 0.0007 26 6 3.6660 -3.5193 0.0002 27 6 2.2757 -3.5959 0.0001 28 6 1.5303 -2.4509 0.0000 29 6 2.2083 -1.2168 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6386 2.1112 -0.0004 34 1 4.0923 2.1566 -0.0103 35 1 5.9184 2.0789 0.0009 36 1 8.2655 0.7861 0.8924 37 1 8.2668 0.7852 -0.8875 38 1 10.3642 2.0064 0.5034 39 1 10.2595 2.8166 -1.0954 40 1 11.1915 4.2099 1.0278 41 1 10.0510 4.9972 -0.1041 42 1 12.1971 6.3476 2.2781 43 1 7.1333 4.0321 1.2452 44 1 7.8905 2.6712 2.1191 45 1 4.2431 -4.4322 -0.0001 46 1 1.7872 -4.5592 -0.0007 47 1 0.4511 -2.4912 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028699898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:19 Heat of formation + Delta-G solvation = 26.151110 kcal Electronic energy + Delta-G solvation = -28263.874419 eV Core-core repulsion = 24411.240644 eV Total energy + Delta-G solvation = -3852.633774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06513 -40.51255 -39.18047 -38.19857 -36.02659 -35.10879 -34.28000 -32.26558 -31.62360 -31.45071 -29.97820 -28.43223 -27.17229 -25.35773 -25.23469 -24.43680 -23.14597 -22.07496 -21.32504 -20.81289 -19.20718 -18.95648 -18.64285 -18.06972 -17.16670 -16.84643 -16.64460 -16.41828 -16.03492 -15.57770 -15.46196 -15.32671 -15.01643 -14.85006 -14.29722 -14.26335 -14.21494 -14.04392 -13.94870 -13.54326 -13.37972 -13.15428 -13.05582 -12.82518 -12.77170 -12.64882 -12.33988 -12.17970 -12.05512 -11.89512 -11.83273 -11.59257 -11.38717 -11.35567 -11.05179 -10.73397 -10.13242 -10.10096 -9.81975 -9.15287 -8.88357 -7.77198 -5.21470 -0.85636 -0.17360 0.74622 1.45890 1.49362 1.55698 1.72713 2.13031 2.24067 2.49640 3.14232 3.31931 3.33382 3.49862 3.62593 3.71535 3.78306 3.84866 3.90615 3.94376 3.98719 4.06348 4.08967 4.41068 4.42525 4.44606 4.54269 4.64362 4.69507 4.75486 4.80975 4.83622 4.89350 4.90307 4.98299 5.04908 5.10148 5.12060 5.16660 5.21190 5.33970 5.42914 5.43983 5.47994 5.58144 5.65793 5.82656 5.84510 6.31799 6.55543 7.06803 7.11176 7.28811 7.78732 8.42692 9.24624 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002222 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.929637 B =12599.903078 C =13394.248995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.026 4.026 3 C -0.140 4.140 4 C -0.041 4.041 5 C -0.159 4.159 6 C 0.548 3.452 7 O -0.552 6.552 8 N -0.716 5.716 9 C 0.148 3.852 10 C -0.093 4.093 11 H 0.099 0.901 12 C -0.123 4.123 13 C 0.153 3.847 14 N -0.628 5.628 15 C -0.240 4.240 16 H 0.079 0.921 17 C -0.069 4.069 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.279 1.279 21 H -0.293 1.293 22 H -0.276 1.276 23 C 0.138 3.862 24 C 0.137 3.863 25 N -0.499 5.499 26 C 0.119 3.881 27 C -0.175 4.175 28 C -0.053 4.053 29 C -0.129 4.129 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.409 0.591 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.071 0.929 41 H -0.007 1.007 42 H 0.247 0.753 43 H 0.033 0.967 44 H 0.017 0.983 45 H 0.173 0.827 46 H 0.176 0.824 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.656 -15.090 -8.298 32.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.028 4.028 3 C -0.157 4.157 4 C -0.061 4.061 5 C -0.163 4.163 6 C 0.337 3.663 7 O -0.430 6.430 8 N -0.370 5.370 9 C 0.024 3.976 10 C -0.112 4.112 11 H 0.117 0.883 12 C -0.162 4.162 13 C 0.028 3.972 14 N -0.355 5.355 15 C -0.369 4.369 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.202 1.202 23 C 0.013 3.987 24 C 0.014 3.986 25 N -0.206 5.206 26 C -0.052 4.052 27 C -0.194 4.194 28 C -0.078 4.078 29 C -0.131 4.131 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.186 0.814 34 H 0.172 0.828 35 H 0.247 0.753 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.011 0.989 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.190 0.810 46 H 0.194 0.806 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -26.105 -15.551 -8.194 31.471 hybrid contribution -0.024 0.991 0.867 1.316 sum -26.129 -14.561 -7.328 30.796 Atomic orbital electron populations 1.21059 0.87342 1.05026 1.04347 1.20393 0.98332 0.91075 0.92959 1.21118 0.93057 0.99672 1.01900 1.21769 0.95385 0.96885 0.92107 1.19868 0.92296 0.93621 1.10522 1.18382 0.87878 0.83489 0.76598 1.90796 1.68630 1.33799 1.49807 1.45875 1.07459 1.08339 1.75333 1.21162 0.79294 0.95690 1.01492 1.22282 0.96948 0.94167 0.97797 0.88298 1.22854 0.94160 0.98041 1.01150 1.21722 0.95466 0.91889 0.88129 1.44889 1.17835 1.51906 1.20836 1.19421 1.02231 1.18478 0.96818 0.90281 1.25647 0.96671 1.02042 1.01742 1.70044 1.08752 1.44758 1.36336 0.85119 0.76718 0.78373 0.78918 1.20544 1.21893 1.20187 1.21547 0.90396 0.92339 0.94430 1.18916 0.90583 0.91777 0.97332 1.68271 1.40949 0.98703 1.12721 1.23664 0.93826 0.95968 0.91768 1.22309 0.94359 1.01469 1.01271 1.21982 1.02254 0.90136 0.93453 1.18989 0.92656 0.96513 1.04978 0.88743 0.89641 0.89083 0.81409 0.82826 0.75336 0.93321 0.90971 0.92167 0.89162 0.91113 0.98929 0.94314 0.94929 0.96450 0.81019 0.80649 0.80276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.53 71.24 0.68 0.09 16 2 C -0.03 -0.36 5.89 -19.77 -0.12 -0.47 16 3 C -0.14 -1.89 9.57 21.98 0.21 -1.68 16 4 C -0.04 -0.77 9.52 22.54 0.21 -0.56 16 5 C -0.16 -4.40 5.91 -19.86 -0.12 -4.52 16 6 C 0.55 18.23 7.76 86.67 0.67 18.90 16 7 O -0.55 -23.02 15.19 -4.02 -0.06 -23.08 16 8 N -0.72 -20.27 5.38 -466.37 -2.51 -22.78 16 9 C 0.15 4.62 5.00 86.38 0.43 5.05 16 10 C -0.09 -3.07 2.98 -9.60 -0.03 -3.10 16 11 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 12 C -0.12 -4.61 6.54 31.99 0.21 -4.41 16 13 C 0.15 7.64 5.89 86.86 0.51 8.15 16 14 N -0.63 -32.92 3.40 -691.22 -2.35 -35.27 16 15 C -0.24 -13.74 10.28 84.03 0.86 -12.88 16 16 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 17 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 18 N -0.95 -57.40 10.09 21.65 0.22 -57.18 16 19 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.14 5.64 6.66 86.67 0.58 6.22 16 24 C 0.14 3.83 6.61 40.61 0.27 4.10 16 25 N -0.50 -15.43 8.44 -187.97 -1.59 -17.01 16 26 C 0.12 2.52 11.15 85.02 0.95 3.46 16 27 C -0.17 -2.28 10.03 22.13 0.22 -2.06 16 28 C -0.05 -0.67 9.36 22.52 0.21 -0.46 16 29 C -0.13 -2.47 5.74 -21.29 -0.12 -2.59 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 0.21 6.42 -2.39 -0.02 0.20 16 32 H 0.09 0.23 8.08 -2.39 -0.02 0.21 16 33 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 34 H 0.15 2.13 6.37 -2.91 -0.02 2.11 16 35 H 0.41 9.18 6.42 -92.71 -0.60 8.59 16 36 H 0.05 1.75 8.00 -2.39 -0.02 1.73 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 39 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 40 H 0.07 4.06 5.87 -2.39 -0.01 4.04 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.02 0.74 7.73 -2.38 -0.02 0.73 16 45 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 46 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 47 H 0.18 0.73 6.42 -2.91 -0.02 0.71 16 Total: -1.00 -84.27 379.77 2.24 -82.03 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.40 Total: 15.23 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.10 Total: 9.76 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -6.23 Total: -132.24 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.06 Total: -23.08 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -84.27 2.24 -82.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028699898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.182 kcal (2) G-P(sol) polarization free energy of solvation -84.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds