Wall clock time and date at job start Tue Mar 31 2020 22:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36350 * 119.95698 * 2 1 4 4 C 1.38872 * 121.05247 * 179.67795 * 3 2 1 5 5 C 1.38740 * 120.72847 * 0.61960 * 4 3 2 6 6 C 1.47446 * 120.33174 * 179.70381 * 5 4 3 7 7 O 1.21598 * 119.99632 * 179.72251 * 6 5 4 8 8 N 1.34775 * 119.99958 * 359.72616 * 6 5 4 9 9 C 1.46497 * 119.99944 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47114 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.92180 * 57.44684 * 10 9 8 12 12 C 1.55155 * 111.00532 * 181.35298 * 10 9 8 13 13 C 1.54327 * 102.94571 * 153.57522 * 12 10 9 14 14 N 1.47024 * 107.26774 * 337.80617 * 13 12 10 15 15 C 1.36941 * 125.64618 * 179.20447 * 14 13 12 16 16 H 1.08005 * 119.99780 * 179.68989 * 15 14 13 17 17 C 1.38813 * 119.99913 * 359.69358 * 15 14 13 18 18 N 1.31616 * 119.99926 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99719 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47341 * 89.99896 * 19 17 15 21 21 H 1.48503 * 109.46756 * 209.99724 * 19 17 15 22 22 H 1.48496 * 109.46957 * 329.99498 * 19 17 15 23 23 C 1.47426 * 108.70449 * 358.94057 * 14 13 12 24 24 C 1.41780 * 119.33837 * 359.43522 * 5 4 3 25 25 N 1.33344 * 121.06051 * 180.22793 * 24 5 4 26 26 C 1.31229 * 121.35452 * 179.97438 * 25 24 5 27 27 C 1.39236 * 121.69338 * 0.04342 * 26 25 24 28 28 C 1.36631 * 119.90970 * 359.97438 * 27 26 25 29 29 C 1.40441 * 119.96173 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47397 * 269.98292 * 1 2 3 31 31 H 1.09001 * 109.46836 * 29.98272 * 1 2 3 32 32 H 1.09000 * 109.46901 * 149.97876 * 1 2 3 33 33 H 1.07997 * 119.47857 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.63472 * 180.30509 * 4 3 2 35 35 H 0.97000 * 120.00160 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46937 * 60.00106 * 9 8 6 37 37 H 1.09002 * 109.47231 * 300.00009 * 9 8 6 38 38 H 1.08999 * 110.71965 * 271.93488 * 12 10 9 39 39 H 1.09000 * 110.72417 * 35.03508 * 12 10 9 40 40 H 1.08995 * 109.88184 * 218.39040 * 13 12 10 41 41 H 1.09002 * 109.88385 * 97.22047 * 13 12 10 42 42 H 0.97001 * 119.99407 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.36518 * 142.96440 * 23 14 13 44 44 H 1.08995 * 110.36673 * 265.17549 * 23 14 13 45 45 H 1.08001 * 119.15853 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.04428 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.92164 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1813 0.0000 4 6 3.5763 1.2079 0.0067 5 6 4.3079 0.0291 0.0007 6 6 5.7819 0.0676 0.0013 7 8 6.4171 -0.9693 0.0011 8 7 6.4251 1.2519 0.0021 9 6 7.8896 1.2901 0.0033 10 6 8.3618 2.7454 0.0047 11 1 7.9601 3.2841 0.8630 12 6 9.9108 2.8275 -0.0282 13 6 10.1704 4.1961 -0.6924 14 7 8.9646 4.5457 -1.4574 15 6 8.7839 5.6937 -2.1818 16 1 7.8591 5.8555 -2.7157 17 6 9.7895 6.6495 -2.2300 18 7 10.9163 6.4525 -1.5790 19 14 9.5427 8.2158 -3.2175 20 1 8.9359 9.2573 -2.3503 21 1 10.8548 8.6946 -3.7221 22 1 8.6415 7.9405 -4.3651 23 6 7.9846 3.4528 -1.3208 24 6 3.6241 -1.2129 -0.0003 25 7 4.2930 -2.3665 -0.0015 26 6 3.6660 -3.5193 -0.0018 27 6 2.2757 -3.5959 -0.0019 28 6 1.5303 -2.4508 -0.0011 29 6 2.2084 -1.2167 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6387 2.1113 -0.0004 34 1 4.0923 2.1567 0.0115 35 1 5.9184 2.0790 0.0027 36 1 8.2668 0.7862 -0.8866 37 1 8.2655 0.7857 0.8934 38 1 10.3197 2.8054 0.9819 39 1 10.3272 2.0191 -0.6292 40 1 11.0273 4.1264 -1.3624 41 1 10.3556 4.9502 0.0726 42 1 11.6188 7.1206 -1.6124 43 1 6.9733 3.8553 -1.2616 44 1 8.0684 2.7612 -2.1591 45 1 4.2431 -4.4322 -0.0024 46 1 1.7872 -4.5591 -0.0027 47 1 0.4510 -2.4911 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028699899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:23 Heat of formation + Delta-G solvation = 47.676426 kcal Electronic energy + Delta-G solvation = -28270.859677 eV Core-core repulsion = 24419.159311 eV Total energy + Delta-G solvation = -3851.700366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.30777 -39.34058 -37.63094 -37.42612 -34.54711 -34.35488 -32.50152 -31.46512 -30.86100 -29.80827 -28.52047 -27.50241 -25.45743 -24.59922 -23.97002 -23.48537 -22.13546 -20.39279 -19.89239 -19.63865 -18.46552 -17.87180 -17.34390 -16.77354 -15.90426 -15.76918 -15.34010 -14.98032 -14.73135 -14.62620 -14.34598 -14.23073 -14.04733 -13.66580 -13.64119 -13.48454 -13.10071 -12.94785 -12.59137 -12.30988 -12.22442 -11.98259 -11.74561 -11.64113 -11.56749 -11.32008 -10.89089 -10.78557 -10.66635 -10.37384 -10.14259 -10.02009 -9.88528 -9.81828 -9.63831 -9.25236 -9.11162 -8.85851 -8.58907 -8.41600 -6.81668 -5.70114 -3.03558 -0.13456 0.52679 1.48578 2.46130 3.21979 3.25115 3.40123 3.45035 3.47282 3.93877 4.02032 4.18194 4.33456 4.45394 4.48761 4.50292 4.67473 4.72309 4.91731 5.00360 5.09285 5.11865 5.21103 5.29291 5.32764 5.44084 5.48345 5.56741 5.60718 5.64754 5.71051 5.75023 5.86178 5.94328 6.03540 6.11044 6.13223 6.18669 6.38129 6.48470 6.51281 6.55108 6.57467 6.73649 6.94891 7.57257 7.64199 7.65835 7.80863 7.84320 8.27512 8.42071 9.23365 9.83845 10.50257 11.41659 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.002280 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.759694 B =12278.518724 C =13528.954638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.041 4.041 3 C -0.128 4.128 4 C -0.056 4.056 5 C -0.112 4.112 6 C 0.550 3.450 7 O -0.504 6.504 8 N -0.725 5.725 9 C 0.136 3.864 10 C -0.118 4.118 11 H 0.079 0.921 12 C -0.135 4.135 13 C 0.177 3.823 14 N -0.607 5.607 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.142 3.858 24 C 0.166 3.834 25 N -0.436 5.436 26 C 0.130 3.870 27 C -0.177 4.177 28 C -0.061 4.061 29 C -0.109 4.109 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.397 0.603 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.034 0.966 44 H 0.020 0.980 45 H 0.160 0.840 46 H 0.137 0.863 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 -17.139 6.119 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.042 4.042 3 C -0.146 4.146 4 C -0.077 4.077 5 C -0.116 4.116 6 C 0.336 3.664 7 O -0.378 6.378 8 N -0.378 5.378 9 C 0.012 3.988 10 C -0.138 4.138 11 H 0.097 0.903 12 C -0.174 4.174 13 C 0.053 3.947 14 N -0.333 5.333 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.016 3.984 24 C 0.042 3.958 25 N -0.143 5.143 26 C -0.042 4.042 27 C -0.197 4.197 28 C -0.087 4.087 29 C -0.111 4.111 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.037 0.963 45 H 0.177 0.823 46 H 0.155 0.845 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.698 -17.558 6.054 27.809 hybrid contribution -1.221 1.280 -0.534 1.848 sum -21.919 -16.277 5.520 27.854 Atomic orbital electron populations 1.20924 0.90388 1.03525 1.02989 1.19886 0.96303 0.91962 0.96079 1.20737 0.93841 0.98124 1.01869 1.21499 0.94303 0.97515 0.94389 1.19946 0.93840 0.91949 1.05839 1.17894 0.86566 0.84039 0.77877 1.90839 1.67389 1.32239 1.47383 1.46012 1.08151 1.07989 1.75670 1.21372 0.78312 0.97043 1.02051 1.22613 0.97785 0.93366 0.99989 0.90252 1.22857 0.93263 1.00687 1.00556 1.21147 0.89566 0.89758 0.94262 1.44488 1.13282 1.17659 1.57859 1.19051 1.00451 0.93496 1.22654 0.90513 1.24809 0.96335 0.98839 1.00564 1.69969 1.05991 1.35015 1.45958 0.86120 0.76855 0.83282 0.79513 1.21632 1.21679 1.20730 1.21563 0.93312 0.90370 0.93163 1.18595 0.88828 0.91989 0.96356 1.68347 1.38791 0.97219 1.09927 1.23202 0.91884 0.96455 0.92680 1.21967 0.95701 0.99563 1.02437 1.21486 1.00432 0.91263 0.95490 1.18671 0.93759 0.94363 1.04351 0.90334 0.90596 0.91027 0.84673 0.84469 0.76742 0.91325 0.91651 0.91986 0.92173 0.93933 0.93539 0.93766 0.94775 0.96271 0.82306 0.84484 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.53 36.00 0.34 -0.24 16 2 C -0.04 -0.34 5.89 -104.47 -0.62 -0.96 16 3 C -0.13 -1.06 9.57 -40.03 -0.38 -1.44 16 4 C -0.06 -0.57 9.52 -39.16 -0.37 -0.94 16 5 C -0.11 -1.50 5.91 -104.61 -0.62 -2.12 16 6 C 0.55 8.67 7.76 -12.51 -0.10 8.57 16 7 O -0.50 -9.70 15.19 5.28 0.08 -9.62 16 8 N -0.73 -10.15 5.36 -61.38 -0.33 -10.48 16 9 C 0.14 2.07 5.12 -4.05 -0.02 2.05 16 10 C -0.12 -1.99 3.10 -88.47 -0.27 -2.27 16 11 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 12 C -0.13 -2.50 6.42 -24.90 -0.16 -2.66 16 13 C 0.18 4.32 5.37 -3.06 -0.02 4.31 16 14 N -0.61 -15.50 3.39 -170.07 -0.58 -16.07 16 15 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 16 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 19 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 2.88 6.41 -2.53 -0.02 2.86 16 24 C 0.17 2.25 6.61 -84.58 -0.56 1.69 16 25 N -0.44 -6.34 8.44 -10.76 -0.09 -6.43 16 26 C 0.13 1.34 11.15 -17.44 -0.19 1.15 16 27 C -0.18 -1.33 10.03 -39.79 -0.40 -1.73 16 28 C -0.06 -0.47 9.36 -39.19 -0.37 -0.84 16 29 C -0.11 -1.13 5.74 -106.82 -0.61 -1.74 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.07 0.28 6.42 -51.93 -0.33 -0.06 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.10 6.37 -52.48 -0.33 0.77 16 35 H 0.40 4.69 6.36 -40.82 -0.26 4.43 16 36 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 40 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 41 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 45 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 46 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 47 H 0.14 0.64 6.42 -52.48 -0.34 0.30 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -36.01 380.51 -10.89 -46.90 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.64 Total: 0.73 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -4.61 Total: -1.19 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.42 Total: -59.65 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.01 -10.89 -46.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028699899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.572 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds