Wall clock time and date at job start Tue Mar 31 2020 22:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39315 * 119.06084 * 2 1 4 4 C 1.38860 * 119.57604 * 179.97438 * 3 2 1 5 5 C 1.47899 * 121.10928 * 180.22990 * 4 3 2 6 6 O 1.21539 * 120.00101 * 174.15536 * 5 4 3 7 7 N 1.34783 * 119.99990 * 354.15501 * 5 4 3 8 8 C 1.46496 * 119.99922 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47319 * 179.97438 * 8 7 5 10 10 H 1.08997 * 110.64011 * 308.14625 * 9 8 7 11 11 C 1.55150 * 110.72093 * 184.99965 * 9 8 7 12 12 C 1.54913 * 101.58041 * 206.13550 * 11 9 8 13 13 N 1.47429 * 104.83294 * 37.00940 * 12 11 9 14 14 C 1.36936 * 125.64614 * 155.83716 * 13 12 11 15 15 H 1.08007 * 119.99402 * 180.02562 * 14 13 12 16 16 C 1.38806 * 120.00105 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00227 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99869 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46932 * 89.99773 * 18 16 14 20 20 H 1.48500 * 109.47265 * 210.00212 * 18 16 14 21 21 H 1.48497 * 109.46969 * 330.00272 * 18 16 14 22 22 C 1.47022 * 108.69985 * 335.87484 * 13 12 11 23 23 C 1.41824 * 117.77616 * 359.95984 * 4 3 2 24 24 C 1.40098 * 121.36833 * 180.02562 * 23 4 3 25 25 C 1.36251 * 119.64457 * 179.97438 * 24 23 4 26 26 C 1.39346 * 120.83225 * 0.02562 * 25 24 23 27 27 C 1.36057 * 121.05227 * 359.97438 * 26 25 24 28 28 C 1.40707 * 119.74344 * 359.97438 * 27 26 25 29 29 N 1.30970 * 119.05306 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47072 * 270.06888 * 1 2 3 31 31 H 1.09007 * 109.46894 * 30.06409 * 1 2 3 32 32 H 1.08995 * 109.47168 * 150.06359 * 1 2 3 33 33 H 1.07996 * 120.20837 * 359.94719 * 3 2 1 34 34 H 0.96999 * 119.99685 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.47028 * 299.99745 * 8 7 5 36 36 H 1.08998 * 109.47641 * 59.99761 * 8 7 5 37 37 H 1.09000 * 111.00507 * 324.20481 * 11 9 8 38 38 H 1.08997 * 111.00582 * 88.02516 * 11 9 8 39 39 H 1.08996 * 110.36989 * 155.84694 * 12 11 9 40 40 H 1.09007 * 110.36635 * 278.17105 * 12 11 9 41 41 H 0.97005 * 120.00049 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.87819 * 241.64174 * 22 13 12 43 43 H 1.08996 * 109.88430 * 120.48060 * 22 13 12 44 44 H 1.07997 * 120.18123 * 0.02562 * 24 23 4 45 45 H 1.08000 * 119.58210 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.47574 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.13183 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2178 0.0000 4 6 3.5723 1.2302 0.0005 5 6 4.3250 2.5033 0.0056 6 8 5.5356 2.4931 0.1132 7 7 3.6685 3.6749 -0.1090 8 6 4.4141 4.9359 -0.1034 9 6 3.4386 6.1059 -0.2470 10 1 2.7827 5.9562 -1.1046 11 6 4.2060 7.4486 -0.3705 12 6 3.1616 8.4549 0.1738 13 7 2.4869 7.7410 1.2732 14 6 1.8450 8.3282 2.3307 15 1 1.3799 7.7147 3.0882 16 6 1.7922 9.7118 2.4292 17 7 2.3586 10.4594 1.5058 18 14 0.9160 10.5127 3.8715 19 1 1.8788 10.7186 4.9832 20 1 0.3613 11.8235 3.4478 21 1 -0.1887 9.6327 4.3301 22 6 2.6181 6.2944 1.0464 23 6 4.2445 -0.0186 0.0020 24 6 5.6434 -0.0938 0.0031 25 6 6.2528 -1.3124 0.0050 26 6 5.5021 -2.4863 0.0052 27 6 4.1420 -2.4496 0.0041 28 6 3.4772 -1.2095 0.0033 29 7 2.1431 -1.1449 0.0005 30 1 -0.3633 0.0012 1.0276 31 1 -0.3633 0.8895 -0.5149 32 1 -0.3633 -0.8905 -0.5128 33 1 1.6319 2.1461 -0.0009 34 1 2.7024 3.6830 -0.1953 35 1 4.9603 5.0309 0.8351 36 1 5.1177 4.9458 -0.9358 37 1 5.1035 7.4440 0.2482 38 1 4.4519 7.6639 -1.4103 39 1 3.6573 9.3497 0.5504 40 1 2.4451 8.7165 -0.6049 41 1 2.3214 11.4263 1.5745 42 1 1.6313 5.8468 0.9279 43 1 3.1381 5.8332 1.8859 44 1 6.2357 0.8093 0.0034 45 1 7.3313 -1.3692 0.0063 46 1 6.0078 -3.4406 0.0063 47 1 3.5748 -3.3687 0.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028970650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:24 Heat of formation + Delta-G solvation = 46.054790 kcal Electronic energy + Delta-G solvation = -28301.302709 eV Core-core repulsion = 24449.532023 eV Total energy + Delta-G solvation = -3851.770686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39954 -39.56572 -37.75289 -37.61720 -34.89590 -33.75305 -32.57836 -32.29129 -30.53615 -29.70324 -28.37392 -27.98891 -25.84959 -24.79323 -23.80962 -22.83201 -22.55627 -20.92259 -20.08840 -19.67635 -18.28637 -17.66733 -17.62656 -16.85614 -16.02444 -15.72318 -15.54670 -15.16729 -15.01828 -14.76162 -14.63660 -14.42284 -13.86320 -13.67514 -13.37929 -13.34241 -13.32294 -12.91466 -12.57670 -12.56752 -11.90725 -11.83136 -11.77217 -11.63933 -11.62721 -11.56460 -11.00431 -10.83691 -10.73601 -10.58584 -10.39740 -10.16128 -10.07342 -9.87350 -9.62154 -9.43843 -9.18696 -8.97585 -8.69286 -8.47891 -6.88388 -5.69760 -3.11712 -0.16834 0.50362 1.47727 2.49514 2.89683 2.92557 3.37233 3.42250 3.44083 3.82588 3.85018 4.16865 4.32216 4.44478 4.45702 4.56727 4.80535 4.88862 5.00966 5.03976 5.11280 5.16131 5.19745 5.29548 5.31990 5.42637 5.47046 5.47769 5.61589 5.64675 5.78763 5.80928 5.84800 5.97460 6.01500 6.07247 6.19419 6.26435 6.28201 6.38123 6.48230 6.52093 6.61382 6.64915 6.82962 7.29691 7.46144 7.58224 7.59295 7.81029 7.98009 8.31960 9.17687 9.78611 10.42898 11.34216 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002288 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.218091 B =12234.268588 C =13145.193547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.155 3.845 3 C -0.135 4.135 4 C -0.065 4.065 5 C 0.558 3.442 6 O -0.528 6.528 7 N -0.712 5.712 8 C 0.131 3.869 9 C -0.116 4.116 10 H 0.077 0.923 11 C -0.135 4.135 12 C 0.151 3.849 13 N -0.604 5.604 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.141 3.859 23 C -0.072 4.072 24 C -0.097 4.097 25 C -0.123 4.123 26 C -0.096 4.096 27 C -0.102 4.102 28 C 0.130 3.870 29 N -0.462 5.462 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.018 0.982 43 H 0.024 0.976 44 H 0.169 0.831 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -23.310 -6.585 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.002 3.998 3 C -0.156 4.156 4 C -0.076 4.076 5 C 0.345 3.655 6 O -0.407 6.407 7 N -0.362 5.362 8 C 0.008 3.992 9 C -0.135 4.135 10 H 0.095 0.905 11 C -0.174 4.174 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.352 4.352 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.015 3.985 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.141 4.141 26 C -0.116 4.116 27 C -0.120 4.120 28 C 0.008 3.992 29 N -0.172 5.172 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.186 0.814 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.800 -23.892 -6.425 24.899 hybrid contribution -0.592 1.158 0.689 1.472 sum 2.208 -22.734 -5.736 23.550 Atomic orbital electron populations 1.20822 0.87943 1.04020 1.03724 1.21428 0.97385 0.87565 0.93413 1.22307 0.93542 1.00011 0.99717 1.20390 0.93676 0.93463 1.00066 1.18021 0.87106 0.83300 0.77096 1.90591 1.13569 1.86595 1.49901 1.46026 1.11292 1.05938 1.72981 1.21581 0.94334 0.80686 1.02597 1.22465 0.97248 0.94410 0.99368 0.90460 1.23011 0.99531 0.94637 1.00236 1.21945 0.91445 0.95128 0.88822 1.44499 1.64233 0.98973 1.25322 1.19068 1.27002 0.89788 0.99368 0.90532 1.24792 1.01136 0.96022 0.98700 1.69789 1.48865 1.04089 1.34318 0.86072 0.79041 0.78783 0.81593 1.21547 1.21617 1.20739 1.21341 0.95842 0.87911 0.93428 1.18663 0.95187 0.92007 1.01589 1.22075 0.93406 1.00521 0.95516 1.21100 1.00568 0.92254 1.00155 1.20990 0.93735 0.98893 0.98004 1.20753 0.94225 0.96012 1.01052 1.18844 0.88763 0.92976 0.98608 1.67639 1.08822 1.28840 1.11890 0.89773 0.90079 0.90085 0.83819 0.76241 0.90731 0.91154 0.91766 0.92042 0.87476 0.96952 0.93681 0.96421 0.95780 0.81389 0.85368 0.85284 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.14 36.01 0.37 -0.37 16 2 C 0.15 1.57 6.78 -82.56 -0.56 1.01 16 3 C -0.13 -1.35 9.21 -38.95 -0.36 -1.71 16 4 C -0.06 -0.80 5.94 -104.34 -0.62 -1.42 16 5 C 0.56 7.50 7.75 -12.30 -0.10 7.41 16 6 O -0.53 -8.36 13.53 5.33 0.07 -8.29 16 7 N -0.71 -8.62 5.43 -61.23 -0.33 -8.96 16 8 C 0.13 1.80 5.02 -4.04 -0.02 1.78 16 9 C -0.12 -1.80 2.96 -88.79 -0.26 -2.07 16 10 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 11 C -0.13 -2.39 6.53 -24.58 -0.16 -2.55 16 12 C 0.15 3.55 5.89 -2.52 -0.01 3.53 16 13 N -0.60 -15.02 3.39 -170.07 -0.58 -15.60 16 14 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 15 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 18 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.14 2.74 6.75 -3.06 -0.02 2.72 16 23 C -0.07 -0.92 5.76 -106.52 -0.61 -1.53 16 24 C -0.10 -1.18 9.25 -39.60 -0.37 -1.55 16 25 C -0.12 -1.18 9.96 -39.88 -0.40 -1.58 16 26 C -0.10 -0.82 9.94 -39.95 -0.40 -1.22 16 27 C -0.10 -1.02 9.98 -39.43 -0.39 -1.41 16 28 C 0.13 1.59 6.61 -84.87 -0.56 1.03 16 29 N -0.46 -5.53 10.19 -7.25 -0.07 -5.61 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.14 1.05 6.55 -52.49 -0.34 0.71 16 34 H 0.40 4.02 6.64 -40.82 -0.27 3.75 16 35 H 0.07 1.14 7.94 -51.93 -0.41 0.72 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 40 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 44 H 0.17 2.24 4.98 -52.49 -0.26 1.98 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -32.66 380.82 -10.97 -43.63 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.60 Total: 2.86 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -4.73 Total: -4.62 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.42 Total: -56.08 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.66 -10.97 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028970650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.682 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds