Wall clock time and date at job start Tue Mar 31 2020 22:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39315 * 119.06084 * 2 1 4 4 C 1.38860 * 119.57604 * 179.97438 * 3 2 1 5 5 C 1.47899 * 121.10928 * 180.22990 * 4 3 2 6 6 O 1.21539 * 120.00101 * 174.15536 * 5 4 3 7 7 N 1.34783 * 119.99990 * 354.15501 * 5 4 3 8 8 C 1.46496 * 119.99922 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47319 * 179.97438 * 8 7 5 10 10 H 1.08997 * 110.64011 * 308.14625 * 9 8 7 11 11 C 1.55150 * 110.72093 * 184.99965 * 9 8 7 12 12 C 1.54913 * 101.58041 * 206.13550 * 11 9 8 13 13 N 1.47429 * 104.83294 * 37.00940 * 12 11 9 14 14 C 1.36936 * 125.64614 * 155.83716 * 13 12 11 15 15 H 1.08007 * 119.99402 * 180.02562 * 14 13 12 16 16 C 1.38806 * 120.00105 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00227 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99869 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46932 * 89.99773 * 18 16 14 20 20 H 1.48500 * 109.47265 * 210.00212 * 18 16 14 21 21 H 1.48497 * 109.46969 * 330.00272 * 18 16 14 22 22 C 1.47022 * 108.69985 * 335.87484 * 13 12 11 23 23 C 1.41824 * 117.77616 * 359.95984 * 4 3 2 24 24 C 1.40098 * 121.36833 * 180.02562 * 23 4 3 25 25 C 1.36251 * 119.64457 * 179.97438 * 24 23 4 26 26 C 1.39346 * 120.83225 * 0.02562 * 25 24 23 27 27 C 1.36057 * 121.05227 * 359.97438 * 26 25 24 28 28 C 1.40707 * 119.74344 * 359.97438 * 27 26 25 29 29 N 1.30970 * 119.05306 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47072 * 270.06888 * 1 2 3 31 31 H 1.09007 * 109.46894 * 30.06409 * 1 2 3 32 32 H 1.08995 * 109.47168 * 150.06359 * 1 2 3 33 33 H 1.07996 * 120.20837 * 359.94719 * 3 2 1 34 34 H 0.96999 * 119.99685 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.47028 * 299.99745 * 8 7 5 36 36 H 1.08998 * 109.47641 * 59.99761 * 8 7 5 37 37 H 1.09000 * 111.00507 * 324.20481 * 11 9 8 38 38 H 1.08997 * 111.00582 * 88.02516 * 11 9 8 39 39 H 1.08996 * 110.36989 * 155.84694 * 12 11 9 40 40 H 1.09007 * 110.36635 * 278.17105 * 12 11 9 41 41 H 0.97005 * 120.00049 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.87819 * 241.64174 * 22 13 12 43 43 H 1.08996 * 109.88430 * 120.48060 * 22 13 12 44 44 H 1.07997 * 120.18123 * 0.02562 * 24 23 4 45 45 H 1.08000 * 119.58210 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.47574 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.13183 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2178 0.0000 4 6 3.5723 1.2302 0.0005 5 6 4.3250 2.5033 0.0056 6 8 5.5356 2.4931 0.1132 7 7 3.6685 3.6749 -0.1090 8 6 4.4141 4.9359 -0.1034 9 6 3.4386 6.1059 -0.2470 10 1 2.7827 5.9562 -1.1046 11 6 4.2060 7.4486 -0.3705 12 6 3.1616 8.4549 0.1738 13 7 2.4869 7.7410 1.2732 14 6 1.8450 8.3282 2.3307 15 1 1.3799 7.7147 3.0882 16 6 1.7922 9.7118 2.4292 17 7 2.3586 10.4594 1.5058 18 14 0.9160 10.5127 3.8715 19 1 1.8788 10.7186 4.9832 20 1 0.3613 11.8235 3.4478 21 1 -0.1887 9.6327 4.3301 22 6 2.6181 6.2944 1.0464 23 6 4.2445 -0.0186 0.0020 24 6 5.6434 -0.0938 0.0031 25 6 6.2528 -1.3124 0.0050 26 6 5.5021 -2.4863 0.0052 27 6 4.1420 -2.4496 0.0041 28 6 3.4772 -1.2095 0.0033 29 7 2.1431 -1.1449 0.0005 30 1 -0.3633 0.0012 1.0276 31 1 -0.3633 0.8895 -0.5149 32 1 -0.3633 -0.8905 -0.5128 33 1 1.6319 2.1461 -0.0009 34 1 2.7024 3.6830 -0.1953 35 1 4.9603 5.0309 0.8351 36 1 5.1177 4.9458 -0.9358 37 1 5.1035 7.4440 0.2482 38 1 4.4519 7.6639 -1.4103 39 1 3.6573 9.3497 0.5504 40 1 2.4451 8.7165 -0.6049 41 1 2.3214 11.4263 1.5745 42 1 1.6313 5.8468 0.9279 43 1 3.1381 5.8332 1.8859 44 1 6.2357 0.8093 0.0034 45 1 7.3313 -1.3692 0.0063 46 1 6.0078 -3.4406 0.0063 47 1 3.5748 -3.3687 0.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028970650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:23 Heat of formation + Delta-G solvation = 26.392054 kcal Electronic energy + Delta-G solvation = -28302.155349 eV Core-core repulsion = 24449.532023 eV Total energy + Delta-G solvation = -3852.623326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23635 -40.59887 -39.25078 -38.38586 -36.20245 -34.72069 -34.22188 -32.98477 -31.82196 -31.01687 -29.81915 -28.71964 -27.40895 -26.01979 -25.00290 -23.73231 -23.43481 -22.22715 -21.62012 -20.99413 -19.07186 -18.91219 -18.49403 -18.42428 -17.22827 -16.81031 -16.66691 -16.39967 -16.17441 -15.81471 -15.59996 -15.55797 -15.39025 -14.59750 -14.38027 -14.27335 -14.20600 -14.06428 -13.89770 -13.54255 -13.39510 -13.16541 -13.08986 -12.83304 -12.67623 -12.59980 -12.35277 -12.31572 -12.01821 -11.88471 -11.82870 -11.60608 -11.58331 -11.46961 -11.29622 -10.73811 -10.38162 -10.25180 -9.72982 -9.28182 -8.87189 -7.77285 -5.21123 -0.99265 -0.27020 0.64330 1.46820 1.48300 1.56766 1.65665 1.89069 2.04195 2.49670 3.03924 3.13384 3.31910 3.32445 3.53202 3.64081 3.66408 3.79599 3.82199 3.96555 4.06383 4.14042 4.17070 4.37885 4.40927 4.44480 4.45012 4.64027 4.65730 4.71358 4.79415 4.81418 4.85982 4.91388 4.98203 5.03662 5.09461 5.13544 5.18585 5.29554 5.36630 5.39507 5.48210 5.49567 5.56192 5.67335 5.83848 5.87577 6.32088 6.34089 6.79696 6.99533 7.11919 7.80030 8.42932 9.24530 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002288 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.218091 B =12234.268588 C =13145.193547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.146 3.854 3 C -0.124 4.124 4 C -0.087 4.087 5 C 0.560 3.440 6 O -0.558 6.558 7 N -0.702 5.702 8 C 0.143 3.857 9 C -0.094 4.094 10 H 0.100 0.900 11 C -0.122 4.122 12 C 0.151 3.849 13 N -0.628 5.628 14 C -0.238 4.238 15 H 0.080 0.920 16 C -0.068 4.068 17 N -0.949 5.949 18 Si 0.978 3.022 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.269 1.269 22 C 0.136 3.864 23 C -0.092 4.092 24 C -0.126 4.126 25 C -0.115 4.115 26 C -0.090 4.090 27 C -0.109 4.109 28 C 0.107 3.893 29 N -0.477 5.477 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.414 0.586 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.070 0.930 40 H -0.008 1.008 41 H 0.247 0.753 42 H 0.032 0.968 43 H 0.020 0.980 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.165 0.835 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -25.463 -6.936 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.007 4.007 3 C -0.144 4.144 4 C -0.098 4.098 5 C 0.347 3.653 6 O -0.438 6.438 7 N -0.354 5.354 8 C 0.020 3.980 9 C -0.113 4.113 10 H 0.118 0.882 11 C -0.161 4.161 12 C 0.026 3.974 13 N -0.355 5.355 14 C -0.367 4.367 15 H 0.098 0.902 16 C -0.261 4.261 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.215 1.215 20 H -0.220 1.220 21 H -0.194 1.194 22 C 0.011 3.989 23 C -0.095 4.095 24 C -0.144 4.144 25 C -0.133 4.133 26 C -0.110 4.110 27 C -0.128 4.128 28 C -0.014 4.014 29 N -0.187 5.187 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.189 0.811 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.010 0.990 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.038 0.962 44 H 0.169 0.831 45 H 0.169 0.831 46 H 0.183 0.817 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.074 -26.083 -6.781 27.029 hybrid contribution -0.375 1.749 0.803 1.961 sum 1.698 -24.334 -5.978 25.115 Atomic orbital electron populations 1.20928 0.85502 1.05194 1.04610 1.22012 0.98961 0.87183 0.92540 1.22620 0.92750 1.01242 0.97805 1.20357 0.94590 0.92715 1.02089 1.18210 0.86819 0.83851 0.76414 1.90586 1.14904 1.87049 1.51253 1.45855 1.11813 1.05072 1.72636 1.21324 0.93852 0.80562 1.02301 1.22300 0.96932 0.93938 0.98149 0.88184 1.22846 0.97794 0.93976 1.01520 1.21740 0.91999 0.95614 0.88049 1.44819 1.64156 1.01447 1.25028 1.19439 1.26752 0.90290 1.00189 0.90237 1.25613 1.02435 0.96717 1.01295 1.70049 1.50141 1.03749 1.35920 0.85083 0.78151 0.77575 0.78559 1.21455 1.22033 1.19437 1.21537 0.97134 0.85011 0.95209 1.18871 0.95663 0.92617 1.02320 1.22021 0.93394 1.01012 0.97965 1.21436 1.01917 0.91765 0.98180 1.21360 0.93287 0.99955 0.96350 1.21070 0.95060 0.95876 1.00747 1.19187 0.89136 0.93639 0.99485 1.67701 1.08800 1.29788 1.12435 0.88859 0.87944 0.89909 0.81091 0.74845 0.92320 0.90017 0.91908 0.89145 0.91216 0.99041 0.94372 0.95020 0.96194 0.83116 0.83067 0.81702 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.14 71.24 0.72 -0.46 16 2 C 0.15 2.74 6.78 42.95 0.29 3.03 16 3 C -0.12 -2.27 9.21 22.68 0.21 -2.07 16 4 C -0.09 -2.08 5.94 -19.68 -0.12 -2.20 16 5 C 0.56 14.74 7.75 86.80 0.67 15.41 16 6 O -0.56 -17.87 13.53 -3.84 -0.05 -17.92 16 7 N -0.70 -15.78 5.43 -465.92 -2.53 -18.30 16 8 C 0.14 3.66 5.02 86.38 0.43 4.10 16 9 C -0.09 -2.73 2.96 -9.61 -0.03 -2.76 16 10 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 11 C -0.12 -4.18 6.53 31.99 0.21 -3.97 16 12 C 0.15 7.17 5.89 86.86 0.51 7.68 16 13 N -0.63 -31.34 3.39 -691.97 -2.35 -33.69 16 14 C -0.24 -13.12 10.27 84.03 0.86 -12.25 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 16 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 17 N -0.95 -56.03 10.09 21.65 0.22 -55.81 16 18 Si 0.98 45.25 29.55 68.60 2.03 47.27 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 C 0.14 5.11 6.75 86.73 0.59 5.70 16 23 C -0.09 -2.37 5.76 -21.09 -0.12 -2.49 16 24 C -0.13 -3.09 9.25 22.26 0.21 -2.88 16 25 C -0.12 -2.08 9.96 22.07 0.22 -1.86 16 26 C -0.09 -1.35 9.94 22.03 0.22 -1.13 16 27 C -0.11 -2.03 9.98 22.37 0.22 -1.81 16 28 C 0.11 2.56 6.61 40.33 0.27 2.83 16 29 N -0.48 -10.97 10.19 -176.83 -1.80 -12.77 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.70 8.07 -2.38 -0.02 0.69 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.17 2.00 6.55 -2.91 -0.02 1.98 16 34 H 0.41 7.17 6.64 -92.71 -0.62 6.56 16 35 H 0.06 1.73 7.94 -2.38 -0.02 1.71 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 2.17 8.05 -2.39 -0.02 2.15 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.07 3.85 5.87 -2.39 -0.01 3.84 16 40 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 41 H 0.25 14.17 8.31 -92.70 -0.77 13.39 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.02 0.77 7.68 -2.39 -0.02 0.76 16 44 H 0.15 4.21 4.98 -2.91 -0.01 4.19 16 45 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -73.75 380.82 1.73 -72.02 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.38 Total: 17.68 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.83 Total: 1.51 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.46 Total: -120.58 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.75 1.73 -72.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028970650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.415 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds