Wall clock time and date at job start Tue Mar 31 2020 22:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39315 * 119.06048 * 2 1 4 4 C 1.38850 * 119.57448 * 180.02562 * 3 2 1 5 5 C 1.47910 * 121.11258 * 180.02562 * 4 3 2 6 6 O 1.21540 * 120.00334 * 174.14745 * 5 4 3 7 7 N 1.34777 * 119.99854 * 354.14747 * 5 4 3 8 8 C 1.46501 * 120.00283 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47412 * 179.97438 * 8 7 5 10 10 H 1.09005 * 110.88705 * 54.29916 * 9 8 7 11 11 C 1.55156 * 111.00582 * 178.18259 * 9 8 7 12 12 C 1.54327 * 102.94413 * 153.57790 * 11 9 8 13 13 N 1.47028 * 107.26907 * 337.80498 * 12 11 9 14 14 C 1.36933 * 125.64421 * 178.97207 * 13 12 11 15 15 H 1.08003 * 119.99442 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00484 * 359.97438 * 14 13 12 17 17 N 1.31621 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00154 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46974 * 90.00135 * 18 16 14 20 20 H 1.48499 * 109.47071 * 210.00024 * 18 16 14 21 21 H 1.48507 * 109.47078 * 330.00210 * 18 16 14 22 22 C 1.47469 * 108.72334 * 358.97652 * 13 12 11 23 23 C 1.41827 * 117.77972 * 359.97438 * 4 3 2 24 24 C 1.40091 * 121.35865 * 179.97438 * 23 4 3 25 25 C 1.36246 * 119.64343 * 180.02562 * 24 23 4 26 26 C 1.39348 * 120.83057 * 359.97438 * 25 24 23 27 27 C 1.36064 * 121.05172 * 359.97438 * 26 25 24 28 28 C 1.40707 * 119.74277 * 0.04747 * 27 26 25 29 29 N 1.30975 * 119.05713 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46982 * 89.99878 * 1 2 3 31 31 H 1.08997 * 109.47555 * 210.00328 * 1 2 3 32 32 H 1.09000 * 109.47354 * 330.00539 * 1 2 3 33 33 H 1.08003 * 120.20876 * 0.04301 * 3 2 1 34 34 H 0.97007 * 119.99654 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.47091 * 300.00907 * 8 7 5 36 36 H 1.09006 * 109.46597 * 59.99808 * 8 7 5 37 37 H 1.09004 * 110.71974 * 271.94021 * 11 9 8 38 38 H 1.08999 * 110.71776 * 35.03959 * 11 9 8 39 39 H 1.08996 * 109.88348 * 97.22111 * 12 11 9 40 40 H 1.08998 * 109.88045 * 218.23806 * 12 11 9 41 41 H 0.96998 * 120.00043 * 179.97438 * 17 16 14 42 42 H 1.08995 * 110.35018 * 265.24886 * 22 13 12 43 43 H 1.09006 * 110.40498 * 142.91067 * 22 13 12 44 44 H 1.08008 * 120.17944 * 0.04184 * 24 23 4 45 45 H 1.08001 * 119.58417 * 179.72389 * 25 24 23 46 46 H 1.07998 * 119.47425 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.13000 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5721 1.2302 -0.0005 5 6 4.3250 2.5034 0.0000 6 8 5.5357 2.4935 0.1068 7 7 3.6685 3.6745 -0.1180 8 6 4.4141 4.9356 -0.1169 9 6 3.4386 6.1050 -0.2636 10 1 2.6630 6.0624 0.5013 11 6 4.1878 7.4630 -0.2210 12 6 3.2602 8.3951 -1.0287 13 7 2.4325 7.5431 -1.8952 14 6 1.4639 7.9836 -2.7571 15 1 0.9087 7.2745 -3.3534 16 6 1.1954 9.3413 -2.8644 17 7 1.8717 10.2053 -2.1374 18 14 -0.1254 9.9421 -4.0408 19 1 -1.4309 9.9929 -3.3349 20 1 0.2266 11.2997 -4.5287 21 1 -0.2220 9.0112 -5.1938 22 6 2.8178 6.1356 -1.6826 23 6 4.2444 -0.0186 -0.0005 24 6 5.6433 -0.0935 -0.0016 25 6 6.2529 -1.3120 -0.0020 26 6 5.5023 -2.4861 -0.0009 27 6 4.1421 -2.4495 0.0011 28 6 3.4772 -1.2095 0.0012 29 7 2.1431 -1.1449 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6318 2.1461 0.0007 34 1 2.7023 3.6824 -0.2036 35 1 4.9610 5.0335 0.8208 36 1 5.1172 4.9427 -0.9499 37 1 4.2895 7.8153 0.8055 38 1 5.1647 7.3796 -0.6972 39 1 2.6237 8.9633 -0.3504 40 1 3.8565 9.0764 -1.6355 41 1 1.6844 11.1540 -2.2126 42 1 3.5537 5.8277 -2.4253 43 1 1.9402 5.4905 -1.7267 44 1 6.2354 0.8098 -0.0018 45 1 7.3314 -1.3686 -0.0074 46 1 6.0082 -3.4402 -0.0009 47 1 3.5751 -3.3687 0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028970651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:26 Heat of formation + Delta-G solvation = 24.775694 kcal Electronic energy + Delta-G solvation = -28314.664007 eV Core-core repulsion = 24461.970590 eV Total energy + Delta-G solvation = -3852.693417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22748 -40.58223 -39.24238 -38.37956 -36.18129 -34.70821 -34.21511 -32.97945 -31.81681 -31.01259 -29.84082 -28.71591 -27.39239 -26.01588 -25.00512 -23.73319 -23.43027 -22.13450 -21.65350 -21.05369 -19.07034 -18.89665 -18.47767 -18.39373 -17.24360 -16.72241 -16.58079 -16.41649 -16.18823 -15.81103 -15.62211 -15.57793 -15.28485 -14.64828 -14.56390 -14.24545 -14.06086 -13.96860 -13.90336 -13.81371 -13.42959 -13.09114 -13.03744 -12.78749 -12.63241 -12.59211 -12.34880 -12.30723 -12.02462 -11.91098 -11.84427 -11.58610 -11.54647 -11.46564 -11.37890 -10.69719 -10.37367 -10.23140 -9.72354 -9.27491 -8.88923 -7.84424 -5.19718 -0.98405 -0.26355 0.65106 1.46663 1.48229 1.56770 1.66348 1.89936 2.05609 2.50049 3.04669 3.13936 3.32692 3.34213 3.53822 3.60815 3.66892 3.81394 3.83234 4.01512 4.03223 4.14715 4.17666 4.38507 4.41222 4.44266 4.45602 4.62156 4.65319 4.72635 4.80459 4.81793 4.86309 4.91484 4.99454 5.04236 5.08745 5.09506 5.18852 5.30086 5.37198 5.42913 5.46911 5.50173 5.56830 5.68860 5.79493 5.88169 6.21088 6.34255 6.80434 7.00360 7.11361 7.79218 8.43170 9.26068 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.002352 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.017436 B =11904.363754 C =13091.423878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.146 3.854 3 C -0.124 4.124 4 C -0.086 4.086 5 C 0.560 3.440 6 O -0.557 6.557 7 N -0.703 5.703 8 C 0.143 3.857 9 C -0.096 4.096 10 H 0.094 0.906 11 C -0.122 4.122 12 C 0.182 3.818 13 N -0.629 5.629 14 C -0.240 4.240 15 H 0.084 0.916 16 C -0.069 4.069 17 N -0.952 5.952 18 Si 0.977 3.023 19 H -0.284 1.284 20 H -0.297 1.297 21 H -0.269 1.269 22 C 0.136 3.864 23 C -0.092 4.092 24 C -0.125 4.125 25 C -0.115 4.115 26 C -0.090 4.090 27 C -0.110 4.110 28 C 0.107 3.893 29 N -0.478 5.478 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.172 0.828 34 H 0.413 0.587 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.013 0.987 40 H 0.003 0.997 41 H 0.246 0.754 42 H 0.017 0.983 43 H 0.051 0.949 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.165 0.835 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 -24.980 7.706 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 C -0.145 4.145 4 C -0.097 4.097 5 C 0.348 3.652 6 O -0.437 6.437 7 N -0.354 5.354 8 C 0.020 3.980 9 C -0.115 4.115 10 H 0.112 0.888 11 C -0.161 4.161 12 C 0.057 3.943 13 N -0.355 5.355 14 C -0.369 4.369 15 H 0.102 0.898 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.806 3.194 19 H -0.211 1.211 20 H -0.224 1.224 21 H -0.194 1.194 22 C 0.011 3.989 23 C -0.095 4.095 24 C -0.143 4.143 25 C -0.133 4.133 26 C -0.110 4.110 27 C -0.128 4.128 28 C -0.015 4.015 29 N -0.188 5.188 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.189 0.811 34 H 0.251 0.749 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.021 0.979 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.170 0.830 45 H 0.169 0.831 46 H 0.183 0.817 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.358 -25.600 7.700 26.942 hybrid contribution -0.516 1.813 -0.815 2.054 sum 2.842 -23.786 6.885 24.925 Atomic orbital electron populations 1.20925 0.85555 1.05141 1.04630 1.22006 0.98939 0.87213 0.92544 1.22619 0.92790 1.01220 0.97821 1.20366 0.94569 0.92771 1.02030 1.18179 0.86802 0.83788 0.76442 1.90583 1.14785 1.87001 1.51331 1.45860 1.11827 1.05169 1.72561 1.21278 0.93656 0.80439 1.02629 1.22433 0.97756 0.93624 0.97729 0.88821 1.22716 0.98226 0.94287 1.00871 1.20917 0.90885 0.91365 0.91115 1.44810 1.41339 1.02197 1.47151 1.19467 1.10608 0.91616 1.15242 0.89812 1.25656 1.02275 0.96243 1.01968 1.70189 1.44460 1.01032 1.44470 0.85096 0.78609 0.77099 0.78641 1.21059 1.22413 1.19410 1.21789 0.97001 0.85822 0.94255 1.18871 0.95675 0.92615 1.02321 1.22025 0.93371 1.01022 0.97917 1.21436 1.01917 0.91767 0.98205 1.21360 0.93278 0.99967 0.96356 1.21068 0.95067 0.95877 1.00787 1.19185 0.89131 0.93660 0.99487 1.67696 1.08827 1.29804 1.12463 0.88808 0.89957 0.88005 0.81081 0.74910 0.90022 0.91742 0.89509 0.91046 0.96866 0.97921 0.94491 0.96507 0.93067 0.83037 0.83052 0.81732 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.14 71.24 0.72 -0.48 16 2 C 0.15 2.75 6.78 42.95 0.29 3.04 16 3 C -0.12 -2.28 9.20 22.68 0.21 -2.07 16 4 C -0.09 -2.06 5.94 -19.68 -0.12 -2.18 16 5 C 0.56 14.43 7.75 86.81 0.67 15.11 16 6 O -0.56 -17.33 13.53 -3.84 -0.05 -17.39 16 7 N -0.70 -15.47 5.41 -465.92 -2.52 -17.99 16 8 C 0.14 3.52 5.12 86.38 0.44 3.96 16 9 C -0.10 -2.77 3.07 -9.40 -0.03 -2.80 16 10 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 11 C -0.12 -4.10 6.42 31.78 0.20 -3.89 16 12 C 0.18 8.74 5.37 86.73 0.47 9.21 16 13 N -0.63 -31.13 3.40 -691.85 -2.35 -33.48 16 14 C -0.24 -13.15 10.28 84.03 0.86 -12.28 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 17 N -0.95 -56.96 10.31 21.65 0.22 -56.73 16 18 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 C 0.14 5.03 6.56 86.85 0.57 5.60 16 23 C -0.09 -2.36 5.76 -21.10 -0.12 -2.48 16 24 C -0.13 -3.04 9.25 22.26 0.21 -2.84 16 25 C -0.12 -2.06 9.96 22.07 0.22 -1.84 16 26 C -0.09 -1.35 9.94 22.03 0.22 -1.13 16 27 C -0.11 -2.04 9.98 22.37 0.22 -1.82 16 28 C 0.11 2.56 6.61 40.33 0.27 2.82 16 29 N -0.48 -11.03 10.19 -176.85 -1.80 -12.83 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 33 H 0.17 1.99 6.55 -2.91 -0.02 1.97 16 34 H 0.41 7.22 6.61 -92.70 -0.61 6.61 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.74 8.03 -2.38 -0.02 1.72 16 37 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 39 H 0.01 0.71 7.38 -2.39 -0.02 0.69 16 40 H 0.00 0.14 7.51 -2.39 -0.02 0.12 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 42 H 0.02 0.65 7.96 -2.39 -0.02 0.63 16 43 H 0.05 1.72 8.14 -2.38 -0.02 1.71 16 44 H 0.15 4.16 4.98 -2.91 -0.01 4.15 16 45 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 46 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -74.39 381.61 1.68 -72.70 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.38 Total: 16.01 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.77 Total: 2.53 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.45 Total: -121.03 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.39 1.68 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028970651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.478 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds