Wall clock time and date at job start Tue Mar 31 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39912 * 125.99765 * 2 1 4 4 C 1.38319 * 107.12236 * 180.02562 * 3 2 1 5 5 C 1.41360 * 131.73020 * 180.02562 * 4 3 2 6 6 C 1.35525 * 119.55232 * 180.27017 * 5 4 3 7 7 C 1.46451 * 118.95700 * 359.45621 * 6 5 4 8 8 C 1.47491 * 120.19990 * 180.29168 * 7 6 5 9 9 O 1.21602 * 120.00245 * 208.58124 * 8 7 6 10 10 N 1.34774 * 120.00111 * 28.57513 * 8 7 6 11 11 C 1.47166 * 120.70527 * 5.23327 * 10 8 7 12 12 C 1.53887 * 108.02936 * 132.73339 * 11 10 8 13 13 H 1.09004 * 112.09409 * 182.54325 * 12 11 10 14 14 C 1.54544 * 107.82884 * 306.50098 * 12 11 10 15 15 C 1.54284 * 104.85207 * 89.07644 * 14 12 11 16 16 C 1.54546 * 104.84481 * 359.97438 * 15 14 12 17 17 H 1.09004 * 112.18040 * 146.41090 * 16 15 14 18 18 C 1.47161 * 120.71120 * 184.94873 * 10 8 7 19 19 N 1.48308 * 107.21032 * 58.35867 * 12 11 10 20 20 C 1.36938 * 128.07748 * 106.72028 * 19 12 11 21 21 H 1.07997 * 120.00077 * 329.45403 * 20 19 12 22 22 C 1.38810 * 119.99903 * 149.44441 * 20 19 12 23 23 N 1.31616 * 120.00408 * 164.51700 * 22 20 19 24 24 Si 1.86802 * 120.00067 * 344.52318 * 22 20 19 25 25 H 1.48502 * 109.47263 * 90.41200 * 24 22 20 26 26 H 1.48498 * 109.47086 * 210.41080 * 24 22 20 27 27 H 1.48500 * 109.46914 * 330.40899 * 24 22 20 28 28 C 1.36315 * 119.60072 * 0.56514 * 7 6 5 29 29 N 1.36528 * 120.65099 * 359.70360 * 28 7 6 30 30 C 1.35275 * 125.99886 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47335 * 269.97705 * 1 2 3 32 32 H 1.08995 * 109.47126 * 29.98245 * 1 2 3 33 33 H 1.09007 * 109.46734 * 149.97890 * 1 2 3 34 34 H 1.08000 * 126.43802 * 0.02990 * 3 2 1 35 35 H 1.08004 * 120.22141 * 359.97438 * 5 4 3 36 36 H 1.07998 * 120.52030 * 179.72187 * 6 5 4 37 37 H 1.09011 * 109.74734 * 252.36209 * 11 10 8 38 38 H 1.08994 * 109.75410 * 13.09748 * 11 10 8 39 39 H 1.09000 * 110.36114 * 207.91704 * 14 12 11 40 40 H 1.08999 * 110.36304 * 330.12329 * 14 12 11 41 41 H 1.09000 * 110.36434 * 118.83867 * 15 14 12 42 42 H 1.08996 * 110.36103 * 241.15760 * 15 14 12 43 43 H 1.08994 * 109.75049 * 346.90014 * 18 10 8 44 44 H 1.08996 * 109.75212 * 107.63493 * 18 10 8 45 45 H 0.96999 * 120.00777 * 180.02562 * 23 22 20 46 46 H 1.08004 * 119.67061 * 179.72430 * 28 7 6 47 47 H 1.07996 * 125.52602 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3294 1.1319 0.0000 4 6 3.6382 0.6845 -0.0006 5 6 4.8698 1.3783 -0.0004 6 6 6.0308 0.6792 -0.0067 7 6 5.9773 -0.7843 -0.0014 8 6 7.2241 -1.5723 -0.0015 9 8 7.2429 -2.6806 -0.5015 10 7 8.3427 -1.0639 0.5523 11 6 8.3110 0.2250 1.2619 12 6 9.0493 0.0500 2.6006 13 1 9.0271 0.9583 3.2029 14 6 8.4170 -1.1533 3.3360 15 6 9.2161 -2.3794 2.8478 16 6 10.2583 -1.8057 1.8614 17 1 11.1970 -2.3593 1.8864 18 6 9.6205 -1.7888 0.4659 19 7 10.4288 -0.3948 2.2861 20 6 11.5887 0.3283 2.3687 21 1 11.5723 1.3959 2.2063 22 6 12.7857 -0.3108 2.6613 23 7 13.9296 0.3034 2.4457 24 14 12.7730 -2.0429 3.3608 25 1 12.8169 -3.0262 2.2488 26 1 13.9577 -2.2320 4.2358 27 1 11.5342 -2.2473 4.1538 28 6 4.7683 -1.4139 -0.0020 29 7 3.6085 -0.6936 -0.0014 30 6 2.3022 -1.0944 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8899 -0.5142 34 1 2.0035 2.1616 0.0005 35 1 4.8854 2.4582 -0.0001 36 1 6.9806 1.1933 -0.0111 37 1 8.8096 0.9874 0.6631 38 1 7.2777 0.5184 1.4467 39 1 8.5225 -1.0367 4.4146 40 1 7.3654 -1.2522 3.0669 41 1 9.7146 -2.8657 3.6864 42 1 8.5579 -3.0823 2.3373 43 1 9.4423 -2.8106 0.1310 44 1 10.2850 -1.2818 -0.2336 45 1 14.7661 -0.1433 2.6498 46 1 4.7275 -2.4931 -0.0026 47 1 1.9599 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029331585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:08 Heat of formation + Delta-G solvation = 84.385274 kcal Electronic energy + Delta-G solvation = -30008.209649 eV Core-core repulsion = 26158.101097 eV Total energy + Delta-G solvation = -3850.108551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.14560 -41.84922 -39.68494 -37.39258 -35.70650 -34.47553 -34.08075 -32.88750 -32.09346 -31.76208 -29.19932 -28.40368 -27.66887 -25.85134 -25.48683 -24.10078 -23.26827 -22.12646 -21.56249 -21.03001 -20.03012 -19.10133 -18.40511 -18.11328 -17.63757 -17.06171 -17.04377 -16.43379 -16.34684 -15.62063 -15.46381 -15.28050 -15.21046 -15.04182 -14.84933 -14.65709 -14.22296 -13.89738 -13.85114 -13.77274 -13.69649 -13.44672 -13.06325 -13.01850 -12.82911 -12.68846 -12.55274 -12.28528 -12.25694 -11.88932 -11.71192 -11.61432 -11.53822 -11.38260 -11.28271 -11.12253 -10.66794 -9.92047 -9.31385 -8.85712 -8.36058 -8.18722 -5.54971 -0.31163 0.17487 1.26809 1.38279 1.46165 1.50246 1.62098 1.97672 2.05678 2.39554 2.53545 2.99910 3.18920 3.35548 3.49980 3.75877 3.82671 3.87748 3.90498 4.00686 4.02718 4.09699 4.26212 4.29722 4.36388 4.42780 4.54054 4.57973 4.60211 4.69796 4.76011 4.82061 4.83206 4.84613 4.96132 4.96424 4.98082 5.04122 5.08632 5.17167 5.27389 5.28181 5.31028 5.46655 5.52574 5.74609 5.94250 5.98189 6.13564 6.27461 6.38688 6.69051 7.00372 7.48051 8.18961 9.00924 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.002924 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.675976 B = 9574.916716 C = 9885.526478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.124 4.124 3 C -0.202 4.202 4 C 0.022 3.978 5 C -0.083 4.083 6 C -0.123 4.123 7 C -0.171 4.171 8 C 0.570 3.430 9 O -0.583 6.583 10 N -0.581 5.581 11 C 0.089 3.911 12 C 0.128 3.872 13 H 0.099 0.901 14 C -0.116 4.116 15 C -0.127 4.127 16 C 0.113 3.887 17 H 0.063 0.937 18 C 0.113 3.887 19 N -0.611 5.611 20 C -0.219 4.219 21 H 0.063 0.937 22 C -0.028 4.028 23 N -0.956 5.956 24 Si 0.935 3.065 25 H -0.282 1.282 26 H -0.315 1.315 27 H -0.244 1.244 28 C 0.125 3.875 29 N -0.363 5.363 30 C -0.062 4.062 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.261 0.739 46 H 0.175 0.825 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.134 -0.010 -3.091 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C -0.226 4.226 4 C -0.082 4.082 5 C -0.101 4.101 6 C -0.143 4.143 7 C -0.177 4.177 8 C 0.360 3.640 9 O -0.466 6.466 10 N -0.311 5.311 11 C -0.034 4.034 12 C 0.022 3.978 13 H 0.117 0.883 14 C -0.155 4.155 15 C -0.166 4.166 16 C 0.006 3.994 17 H 0.081 0.919 18 C -0.011 4.011 19 N -0.335 5.335 20 C -0.348 4.348 21 H 0.081 0.919 22 C -0.224 4.224 23 N -0.602 5.602 24 Si 0.766 3.234 25 H -0.210 1.210 26 H -0.244 1.244 27 H -0.167 1.167 28 C 0.002 3.998 29 N -0.028 5.028 30 C -0.188 4.188 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.177 0.823 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.192 0.808 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -26.707 -0.690 -3.307 26.919 hybrid contribution 1.327 -0.949 0.207 1.645 sum -25.379 -1.639 -3.100 25.620 Atomic orbital electron populations 1.20280 0.87392 1.03387 1.02785 1.19931 0.97329 0.91764 1.03733 1.21373 0.89298 0.99991 1.11976 1.19361 0.96576 0.81974 1.10300 1.20837 0.88272 1.01565 0.99453 1.22483 1.00247 0.90580 1.00974 1.20052 0.91496 0.94842 1.11309 1.18034 0.83256 0.84976 0.77722 1.90748 1.85510 1.21456 1.48863 1.47829 1.07750 1.22315 1.53210 1.23186 1.02605 0.83826 0.93779 1.22327 0.83761 0.97782 0.93915 0.88297 1.22424 0.98697 0.94317 1.00040 1.22573 0.97399 0.98235 0.98390 1.22224 0.96466 0.87535 0.93167 0.91921 1.21984 0.84052 0.97155 0.97957 1.45458 1.02745 1.09252 1.76036 1.18467 0.83768 0.92244 1.40276 0.91937 1.25847 0.95084 1.01538 0.99896 1.69886 0.97627 1.40203 1.52504 0.86016 0.77075 0.81497 0.78840 1.20994 1.24403 1.16744 1.21646 0.83240 0.98237 0.96633 1.41553 1.05523 1.07308 1.48430 1.22243 0.79297 1.01400 1.15825 0.90675 0.90697 0.90792 0.81918 0.80850 0.82327 0.91113 0.85900 0.91461 0.90395 0.92456 0.91043 0.89721 0.92560 0.92963 0.80812 0.79402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.37 71.24 0.74 -0.07 16 2 C -0.12 -2.02 6.10 -20.14 -0.12 -2.14 16 3 C -0.20 -3.58 10.91 22.69 0.25 -3.33 16 4 C 0.02 0.44 6.71 38.99 0.26 0.70 16 5 C -0.08 -1.49 10.09 22.41 0.23 -1.26 16 6 C -0.12 -2.53 7.62 23.78 0.18 -2.35 16 7 C -0.17 -4.25 5.52 -19.15 -0.11 -4.35 16 8 C 0.57 17.59 7.47 86.68 0.65 18.24 16 9 O -0.58 -21.40 16.08 -4.04 -0.06 -21.46 16 10 N -0.58 -18.27 2.26 -819.66 -1.85 -20.12 16 11 C 0.09 2.48 4.10 86.55 0.35 2.83 16 12 C 0.13 4.25 4.32 45.47 0.20 4.45 16 13 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 14 C -0.12 -3.48 6.18 31.55 0.20 -3.28 16 15 C -0.13 -4.35 5.91 31.56 0.19 -4.17 16 16 C 0.11 4.53 2.87 45.31 0.13 4.66 16 17 H 0.06 2.81 3.58 -2.38 -0.01 2.80 16 18 C 0.11 4.16 5.88 86.40 0.51 4.66 16 19 N -0.61 -26.53 2.45 -637.45 -1.56 -28.09 16 20 C -0.22 -11.70 10.74 84.03 0.90 -10.80 16 21 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 22 C -0.03 -1.60 5.48 84.86 0.47 -1.14 16 23 N -0.96 -58.79 13.97 21.65 0.30 -58.49 16 24 Si 0.94 45.37 24.73 68.60 1.70 47.06 16 25 H -0.28 -13.34 6.62 99.48 0.66 -12.69 16 26 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 27 H -0.24 -10.96 5.40 99.48 0.54 -10.42 16 28 C 0.13 2.86 10.44 83.51 0.87 3.73 16 29 N -0.36 -7.71 2.93 -345.32 -1.01 -8.72 16 30 C -0.06 -1.09 11.49 83.26 0.96 -0.14 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.16 3.00 5.33 -2.91 -0.02 2.98 16 37 H 0.07 2.04 7.75 -2.38 -0.02 2.02 16 38 H 0.12 2.69 4.48 -2.39 -0.01 2.67 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.08 2.02 7.84 -2.39 -0.02 2.00 16 41 H 0.06 2.02 6.75 -2.39 -0.02 2.00 16 42 H 0.07 2.29 7.83 -2.39 -0.02 2.28 16 43 H 0.08 3.07 7.08 -2.39 -0.02 3.05 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.17 3.64 7.82 -2.91 -0.02 3.62 16 47 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -69.76 361.58 5.12 -64.63 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.77 Total: 18.95 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.84 Total: 6.24 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -4.12 Total: -115.42 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.70 Total: 47.06 kcal Total: -69.76 5.12 -64.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029331585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.019 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds