Wall clock time and date at job start Tue Mar 31 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37715 * 119.67553 * 2 1 4 4 C 1.39184 * 119.80819 * 179.97438 * 3 2 1 5 5 N 1.37490 * 133.18425 * 180.34804 * 4 3 2 6 6 H 0.97004 * 125.60570 * 359.93803 * 5 4 3 7 7 C 1.38148 * 108.79075 * 180.11796 * 5 4 3 8 8 C 1.47058 * 125.43012 * 179.82520 * 7 5 4 9 9 O 1.21641 * 120.00139 * 179.69096 * 8 7 5 10 10 N 1.34780 * 119.99564 * 359.69639 * 8 7 5 11 11 C 1.49759 * 127.90615 * 0.28521 * 10 8 7 12 12 C 1.56022 * 105.31888 * 181.25901 * 11 10 8 13 13 H 1.08999 * 116.24911 * 160.00806 * 12 11 10 14 14 C 1.57082 * 99.60616 * 33.12604 * 12 11 10 15 15 C 1.49294 * 126.94136 * 179.97438 * 10 8 7 16 16 H 1.09002 * 116.15371 * 16.70409 * 15 10 8 17 17 C 1.56014 * 104.09328 * 247.55864 * 15 10 8 18 18 N 1.47870 * 105.10678 * 287.92674 * 17 15 10 19 19 C 1.36939 * 126.94175 * 181.96919 * 18 17 15 20 20 H 1.08004 * 119.99707 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00481 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99654 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47095 * 60.00110 * 23 21 19 25 25 H 1.48505 * 109.46766 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47311 * 299.99373 * 23 21 19 27 27 C 1.35867 * 109.14659 * 359.56317 * 7 5 4 28 28 C 1.40884 * 119.43400 * 0.02562 * 4 3 2 29 29 C 1.40068 * 119.66619 * 359.97438 * 28 4 3 30 30 C 1.50695 * 120.08629 * 179.97438 * 29 28 4 31 31 C 1.36478 * 119.82664 * 0.02562 * 29 28 4 32 32 H 1.09004 * 109.47006 * 270.01374 * 1 2 3 33 33 H 1.08990 * 109.47527 * 30.01085 * 1 2 3 34 34 H 1.09006 * 109.47457 * 150.01926 * 1 2 3 35 35 H 1.07997 * 120.09576 * 0.02562 * 3 2 1 36 36 H 1.08994 * 109.93901 * 62.41902 * 11 10 8 37 37 H 1.09000 * 110.56908 * 300.41731 * 11 10 8 38 38 H 1.08997 * 112.36479 * 191.71340 * 14 12 11 39 39 H 1.09006 * 112.36430 * 64.28415 * 14 12 11 40 40 H 1.09006 * 110.31678 * 46.82922 * 17 15 10 41 41 H 1.09004 * 110.31753 * 168.91164 * 17 15 10 42 42 H 0.97001 * 119.99513 * 180.02562 * 22 21 19 43 43 H 1.08000 * 126.13711 * 180.26144 * 27 7 5 44 44 H 1.08999 * 109.47111 * 90.00723 * 30 29 28 45 45 H 1.09005 * 109.47348 * 210.00342 * 30 29 28 46 46 H 1.09006 * 109.47334 * 330.00341 * 30 29 28 47 47 H 1.07999 * 119.69082 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1965 0.0000 4 6 3.5806 1.1997 0.0005 5 7 4.5192 2.2044 0.0068 6 1 4.3284 3.1555 0.0114 7 6 5.7787 1.6368 0.0012 8 6 7.0482 2.3790 0.0015 9 8 8.1050 1.7765 0.0020 10 7 7.0408 3.7268 0.0014 11 6 5.8542 4.6403 0.0068 12 6 6.4452 6.0839 -0.0292 13 1 5.7717 6.8723 -0.3651 14 6 7.7293 5.8199 -0.8944 15 6 8.2291 4.6305 0.0022 16 1 9.1791 4.1755 -0.2783 17 6 8.1808 5.3204 1.4007 18 7 7.0452 6.2645 1.3256 19 6 6.6280 7.1294 2.3019 20 1 5.7788 7.7731 2.1262 21 6 7.2965 7.1787 3.5175 22 7 8.3311 6.3938 3.7318 23 14 6.7268 8.3580 4.8495 24 1 5.3248 8.0422 5.2236 25 1 7.6005 8.2171 6.0420 26 1 6.8019 9.7515 4.3421 27 6 5.6576 0.2835 0.0013 28 6 4.2758 -0.0256 0.0005 29 6 3.5593 -1.2292 0.0005 30 6 4.2932 -2.5453 -0.0001 31 6 2.1947 -1.2068 0.0000 32 1 -0.3633 0.0002 1.0277 33 1 -0.3634 0.8898 -0.5139 34 1 -0.3634 -0.8902 -0.5136 35 1 1.6451 2.1296 0.0004 36 1 5.2745 4.4913 0.9177 37 1 5.2314 4.4644 -0.8703 38 1 8.4176 6.6650 -0.8838 39 1 7.4879 5.5021 -1.9088 40 1 8.0066 4.5804 2.1819 41 1 9.1100 5.8579 1.5899 42 1 8.7979 6.4280 4.5814 43 1 6.4696 -0.4286 0.0016 44 1 4.4704 -2.8629 1.0274 45 1 3.6927 -3.2960 -0.5139 46 1 5.2473 -2.4291 -0.5142 47 1 1.6444 -2.1361 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032546210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:57 Heat of formation + Delta-G solvation = 79.983012 kcal Electronic energy + Delta-G solvation = -29402.677121 eV Core-core repulsion = 25552.377673 eV Total energy + Delta-G solvation = -3850.299448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62139 -39.96703 -38.08869 -37.19502 -33.94491 -33.63757 -31.77787 -30.63226 -30.24815 -29.08543 -28.72472 -27.37055 -26.40582 -25.35121 -23.94706 -22.68659 -21.56557 -20.44920 -20.32041 -19.86764 -19.00163 -17.73652 -16.78110 -16.60946 -15.79017 -15.62241 -15.39538 -15.05155 -14.67825 -14.40076 -14.09128 -13.73679 -13.55470 -13.52564 -13.37587 -13.26284 -13.04993 -12.79111 -12.60143 -12.26884 -12.05019 -12.02722 -11.82838 -11.60409 -11.41986 -11.14121 -10.97298 -10.95264 -10.91451 -10.86280 -10.71909 -10.38485 -10.18751 -9.83854 -9.73062 -9.67506 -8.80359 -8.29159 -8.14766 -7.60680 -7.04446 -5.85441 -3.21335 0.78683 1.58661 2.19289 2.93993 3.19722 3.32051 3.36251 3.38812 3.57248 3.79293 4.33214 4.54434 4.59776 4.71996 4.94403 4.97256 5.00804 5.12560 5.18750 5.21688 5.30098 5.42723 5.43243 5.43839 5.49720 5.55035 5.57319 5.59153 5.62296 5.68141 5.75330 5.81120 5.89853 5.96900 6.08535 6.11424 6.25263 6.27490 6.43402 6.46599 6.51581 6.56278 6.66689 6.71181 7.08438 7.32015 7.37483 7.43373 7.62907 7.84739 8.00316 8.37631 9.00462 9.61507 10.29073 11.26338 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.003108 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.102099 B = 9007.637840 C = 9941.420790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.057 4.057 3 C -0.139 4.139 4 C 0.115 3.885 5 N -0.577 5.577 6 H 0.420 0.580 7 C 0.033 3.967 8 C 0.596 3.404 9 O -0.536 6.536 10 N -0.606 5.606 11 C 0.071 3.929 12 C 0.145 3.855 13 H 0.110 0.890 14 C -0.150 4.150 15 C 0.099 3.901 16 H 0.117 0.883 17 C 0.172 3.828 18 N -0.595 5.595 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.284 1.284 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.026 4.026 30 C -0.115 4.115 31 C -0.153 4.153 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.256 0.744 43 H 0.153 0.847 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.009 -11.530 -10.748 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.059 4.059 3 C -0.160 4.160 4 C 0.004 3.996 5 N -0.185 5.185 6 H 0.264 0.736 7 C -0.077 4.077 8 C 0.384 3.616 9 O -0.413 6.413 10 N -0.340 5.340 11 C -0.055 4.055 12 C 0.035 3.965 13 H 0.128 0.872 14 C -0.189 4.189 15 C -0.003 4.003 16 H 0.134 0.866 17 C 0.047 3.953 18 N -0.319 5.319 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.200 4.200 22 N -0.563 5.563 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.144 4.144 28 C -0.124 4.124 29 C -0.027 4.027 30 C -0.172 4.172 31 C -0.173 4.173 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.171 0.829 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.311 -11.671 -10.439 19.316 hybrid contribution -0.455 1.105 0.935 1.518 sum -11.767 -10.565 -9.503 18.450 Atomic orbital electron populations 1.20766 0.91048 1.02638 1.02317 1.19520 0.95622 0.92155 0.98608 1.19856 0.89754 0.98308 1.08042 1.18315 0.90829 0.87840 1.02599 1.42640 1.04109 1.08695 1.63057 0.73636 1.20268 0.84221 0.93213 1.09955 1.16758 0.87024 0.80397 0.77421 1.90809 1.30827 1.67606 1.52107 1.49560 1.09882 1.03671 1.70845 1.23872 0.88137 0.93909 0.99542 1.23135 0.93788 0.91721 0.87840 0.87182 1.24162 0.99541 0.98223 0.96996 1.24376 0.88781 0.87689 0.99459 0.86568 1.21969 0.91869 0.91459 0.89962 1.45244 1.32628 1.43891 1.10166 1.18986 1.11556 1.13896 0.92214 0.90145 1.24839 0.97790 0.99447 0.97925 1.69902 1.21617 1.40314 1.24440 0.86181 0.77772 0.80398 0.81245 1.21126 1.21525 1.21011 1.20788 0.95228 0.93038 1.05298 1.18016 0.92989 0.92301 1.09117 1.19142 0.93176 0.93449 0.96885 1.20783 1.00359 0.93554 1.02473 1.20329 0.93165 0.97291 1.06473 0.91147 0.91639 0.91513 0.86173 0.90852 0.92722 0.89347 0.91503 0.93334 0.92302 0.93377 0.82949 0.90958 0.91567 0.91256 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.99 36.00 0.36 -0.48 16 2 C -0.06 -0.61 5.88 -104.57 -0.61 -1.23 16 3 C -0.14 -1.67 9.71 -39.42 -0.38 -2.05 16 4 C 0.11 1.63 7.25 -83.98 -0.61 1.03 16 5 N -0.58 -8.48 5.83 -7.36 -0.04 -8.52 16 6 H 0.42 5.59 5.01 -40.82 -0.20 5.39 16 7 C 0.03 0.56 6.85 -82.29 -0.56 0.00 16 8 C 0.60 11.38 7.89 -12.68 -0.10 11.28 16 9 O -0.54 -11.58 17.19 5.24 0.09 -11.49 16 10 N -0.61 -11.08 3.01 -156.60 -0.47 -11.55 16 11 C 0.07 1.14 4.60 -0.61 0.00 1.14 16 12 C 0.14 2.52 5.53 -62.56 -0.35 2.18 16 13 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 14 C -0.15 -2.40 6.82 -22.29 -0.15 -2.55 16 15 C 0.10 1.87 5.19 -62.54 -0.32 1.54 16 16 H 0.12 2.12 8.06 -51.93 -0.42 1.70 16 17 C 0.17 4.03 4.76 -1.68 -0.01 4.03 16 18 N -0.60 -13.78 3.02 -156.35 -0.47 -14.25 16 19 C -0.24 -6.17 10.37 -15.06 -0.16 -6.32 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 22 N -0.92 -26.28 10.56 55.49 0.59 -25.69 16 23 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C -0.12 -1.82 10.12 -39.15 -0.40 -2.22 16 28 C -0.12 -1.73 5.98 -106.93 -0.64 -2.37 16 29 C -0.03 -0.31 5.88 -104.57 -0.62 -0.93 16 30 C -0.12 -1.08 9.93 36.00 0.36 -0.72 16 31 C -0.15 -1.65 9.25 -39.97 -0.37 -2.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.07 1.29 7.40 -51.93 -0.38 0.91 16 37 H 0.05 0.71 7.22 -51.93 -0.37 0.33 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 41 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 46 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -31.68 377.89 -11.06 -42.74 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.76 Total: 6.64 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -4.66 Total: 0.12 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.40 Total: -60.02 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.68 -11.06 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032546210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.723 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds