Wall clock time and date at job start Tue Mar 31 2020 22:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37715 * 119.67553 * 2 1 4 4 C 1.39184 * 119.80819 * 179.97438 * 3 2 1 5 5 N 1.37490 * 133.18425 * 180.34804 * 4 3 2 6 6 H 0.97004 * 125.60570 * 359.93803 * 5 4 3 7 7 C 1.38148 * 108.79075 * 180.11796 * 5 4 3 8 8 C 1.47058 * 125.43012 * 179.82520 * 7 5 4 9 9 O 1.21641 * 120.00139 * 179.69096 * 8 7 5 10 10 N 1.34780 * 119.99564 * 359.69639 * 8 7 5 11 11 C 1.49759 * 127.90615 * 0.28521 * 10 8 7 12 12 C 1.56022 * 105.31888 * 181.25901 * 11 10 8 13 13 H 1.08999 * 116.24911 * 160.00806 * 12 11 10 14 14 C 1.57082 * 99.60616 * 33.12604 * 12 11 10 15 15 C 1.49294 * 126.94136 * 179.97438 * 10 8 7 16 16 H 1.09002 * 116.15371 * 16.70409 * 15 10 8 17 17 C 1.56014 * 104.09328 * 247.55864 * 15 10 8 18 18 N 1.47870 * 105.10678 * 287.92674 * 17 15 10 19 19 C 1.36939 * 126.94175 * 181.96919 * 18 17 15 20 20 H 1.08004 * 119.99707 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00481 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99654 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47095 * 60.00110 * 23 21 19 25 25 H 1.48505 * 109.46766 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47311 * 299.99373 * 23 21 19 27 27 C 1.35867 * 109.14659 * 359.56317 * 7 5 4 28 28 C 1.40884 * 119.43400 * 0.02562 * 4 3 2 29 29 C 1.40068 * 119.66619 * 359.97438 * 28 4 3 30 30 C 1.50695 * 120.08629 * 179.97438 * 29 28 4 31 31 C 1.36478 * 119.82664 * 0.02562 * 29 28 4 32 32 H 1.09004 * 109.47006 * 270.01374 * 1 2 3 33 33 H 1.08990 * 109.47527 * 30.01085 * 1 2 3 34 34 H 1.09006 * 109.47457 * 150.01926 * 1 2 3 35 35 H 1.07997 * 120.09576 * 0.02562 * 3 2 1 36 36 H 1.08994 * 109.93901 * 62.41902 * 11 10 8 37 37 H 1.09000 * 110.56908 * 300.41731 * 11 10 8 38 38 H 1.08997 * 112.36479 * 191.71340 * 14 12 11 39 39 H 1.09006 * 112.36430 * 64.28415 * 14 12 11 40 40 H 1.09006 * 110.31678 * 46.82922 * 17 15 10 41 41 H 1.09004 * 110.31753 * 168.91164 * 17 15 10 42 42 H 0.97001 * 119.99513 * 180.02562 * 22 21 19 43 43 H 1.08000 * 126.13711 * 180.26144 * 27 7 5 44 44 H 1.08999 * 109.47111 * 90.00723 * 30 29 28 45 45 H 1.09005 * 109.47348 * 210.00342 * 30 29 28 46 46 H 1.09006 * 109.47334 * 330.00341 * 30 29 28 47 47 H 1.07999 * 119.69082 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1965 0.0000 4 6 3.5806 1.1997 0.0005 5 7 4.5192 2.2044 0.0068 6 1 4.3284 3.1555 0.0114 7 6 5.7787 1.6368 0.0012 8 6 7.0482 2.3790 0.0015 9 8 8.1050 1.7765 0.0020 10 7 7.0408 3.7268 0.0014 11 6 5.8542 4.6403 0.0068 12 6 6.4452 6.0839 -0.0292 13 1 5.7717 6.8723 -0.3651 14 6 7.7293 5.8199 -0.8944 15 6 8.2291 4.6305 0.0022 16 1 9.1791 4.1755 -0.2783 17 6 8.1808 5.3204 1.4007 18 7 7.0452 6.2645 1.3256 19 6 6.6280 7.1294 2.3019 20 1 5.7788 7.7731 2.1262 21 6 7.2965 7.1787 3.5175 22 7 8.3311 6.3938 3.7318 23 14 6.7268 8.3580 4.8495 24 1 5.3248 8.0422 5.2236 25 1 7.6005 8.2171 6.0420 26 1 6.8019 9.7515 4.3421 27 6 5.6576 0.2835 0.0013 28 6 4.2758 -0.0256 0.0005 29 6 3.5593 -1.2292 0.0005 30 6 4.2932 -2.5453 -0.0001 31 6 2.1947 -1.2068 0.0000 32 1 -0.3633 0.0002 1.0277 33 1 -0.3634 0.8898 -0.5139 34 1 -0.3634 -0.8902 -0.5136 35 1 1.6451 2.1296 0.0004 36 1 5.2745 4.4913 0.9177 37 1 5.2314 4.4644 -0.8703 38 1 8.4176 6.6650 -0.8838 39 1 7.4879 5.5021 -1.9088 40 1 8.0066 4.5804 2.1819 41 1 9.1100 5.8579 1.5899 42 1 8.7979 6.4280 4.5814 43 1 6.4696 -0.4286 0.0016 44 1 4.4704 -2.8629 1.0274 45 1 3.6927 -3.2960 -0.5139 46 1 5.2473 -2.4291 -0.5142 47 1 1.6444 -2.1361 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032546210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:56 Heat of formation + Delta-G solvation = 62.415471 kcal Electronic energy + Delta-G solvation = -29403.438907 eV Core-core repulsion = 25552.377673 eV Total energy + Delta-G solvation = -3851.061233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.73736 -41.41469 -39.48580 -38.29288 -35.54548 -34.69653 -33.44988 -31.69203 -31.44027 -30.52273 -30.38327 -28.14263 -27.43365 -27.05890 -25.49595 -23.94650 -22.68298 -21.72674 -21.44779 -21.33807 -20.42106 -19.24288 -18.23322 -17.94958 -17.31889 -16.81180 -16.65965 -16.41322 -15.93298 -15.73052 -15.57195 -15.06250 -14.89662 -14.79247 -14.30293 -14.13557 -13.94084 -13.88605 -13.75170 -13.59888 -13.46900 -13.27295 -13.14678 -12.91281 -12.72996 -12.70417 -12.47480 -12.35644 -12.23682 -12.15348 -11.97271 -11.78813 -11.77941 -11.59089 -11.36355 -10.78074 -10.72940 -9.78180 -9.17604 -8.98059 -8.63489 -7.88427 -5.25123 -0.28297 0.64578 1.02329 1.44775 1.47354 1.53660 1.63671 1.97283 2.22094 2.45036 2.84504 3.20535 3.29656 3.40998 3.65605 3.69627 3.75745 3.93755 3.96015 4.04493 4.13225 4.27974 4.28389 4.30623 4.43873 4.47596 4.56076 4.66349 4.71368 4.76069 4.78523 4.85840 4.92073 4.94199 4.95256 5.01737 5.04689 5.15051 5.17018 5.35131 5.39073 5.40556 5.55769 5.59208 5.61726 5.70476 5.74540 6.04674 6.14191 6.35864 6.41455 6.90010 6.97955 7.66243 8.35726 9.22415 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.003108 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.102099 B = 9007.637840 C = 9941.420790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.048 4.048 3 C -0.156 4.156 4 C 0.107 3.893 5 N -0.574 5.574 6 H 0.424 0.576 7 C 0.004 3.996 8 C 0.592 3.408 9 O -0.574 6.574 10 N -0.609 5.609 11 C 0.078 3.922 12 C 0.141 3.859 13 H 0.144 0.856 14 C -0.126 4.126 15 C 0.101 3.899 16 H 0.118 0.882 17 C 0.186 3.814 18 N -0.615 5.615 19 C -0.234 4.234 20 H 0.098 0.902 21 C -0.070 4.070 22 N -0.956 5.956 23 Si 0.978 3.022 24 H -0.277 1.277 25 H -0.304 1.304 26 H -0.272 1.272 27 C -0.114 4.114 28 C -0.146 4.146 29 C -0.034 4.034 30 C -0.115 4.115 31 C -0.154 4.154 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.104 0.896 40 H -0.005 1.005 41 H 0.023 0.977 42 H 0.244 0.756 43 H 0.152 0.848 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 -11.876 -12.799 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.177 4.177 4 C -0.004 4.004 5 N -0.182 5.182 6 H 0.268 0.732 7 C -0.105 4.105 8 C 0.382 3.618 9 O -0.454 6.454 10 N -0.341 5.341 11 C -0.045 4.045 12 C 0.035 3.965 13 H 0.162 0.838 14 C -0.165 4.165 15 C -0.002 4.002 16 H 0.135 0.865 17 C 0.060 3.940 18 N -0.339 5.339 19 C -0.363 4.363 20 H 0.116 0.884 21 C -0.263 4.263 22 N -0.605 5.605 23 Si 0.806 3.194 24 H -0.203 1.203 25 H -0.231 1.231 26 H -0.197 1.197 27 C -0.141 4.141 28 C -0.150 4.150 29 C -0.035 4.035 30 C -0.171 4.171 31 C -0.173 4.173 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.013 0.987 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.170 0.830 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.265 -11.990 -12.543 23.111 hybrid contribution 0.603 1.082 1.537 1.974 sum -14.662 -10.908 -11.006 21.333 Atomic orbital electron populations 1.20854 0.88466 1.04070 1.03298 1.20013 0.97484 0.91601 0.95899 1.20170 0.88849 0.99860 1.08781 1.18683 0.91704 0.87526 1.02478 1.42482 1.03425 1.08979 1.63343 0.73182 1.19920 0.84082 0.93439 1.13094 1.17111 0.87546 0.80537 0.76624 1.90767 1.32362 1.68360 1.53957 1.49600 1.10272 1.03735 1.70504 1.23797 0.87520 0.92451 1.00782 1.23582 0.94826 0.93137 0.85004 0.83813 1.24072 0.98148 0.96435 0.97879 1.24243 0.89771 0.88891 0.97292 0.86466 1.21544 0.90786 0.90281 0.91392 1.45480 1.32920 1.43254 1.12225 1.19508 1.10984 1.13251 0.92525 0.88411 1.25685 0.98475 1.01577 1.00537 1.70154 1.23455 1.42671 1.24211 0.85161 0.77080 0.78956 0.78173 1.20333 1.23079 1.19718 1.20957 0.96254 0.92801 1.04102 1.18248 0.92396 0.93675 1.10718 1.19509 0.94035 0.93625 0.96336 1.20836 1.00314 0.92912 1.03052 1.20745 0.92762 0.98685 1.05100 0.90195 0.90646 0.89763 0.84411 0.92554 0.88268 0.89350 0.87758 0.98728 0.95905 0.94686 0.82987 0.90462 0.89186 0.91823 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.99 71.23 0.71 -0.50 16 2 C -0.05 -0.87 5.88 -19.83 -0.12 -0.99 16 3 C -0.16 -3.39 9.71 22.37 0.22 -3.17 16 4 C 0.11 2.92 7.25 39.13 0.28 3.20 16 5 N -0.57 -16.57 5.83 -177.19 -1.03 -17.60 16 6 H 0.42 10.81 5.01 -92.71 -0.46 10.34 16 7 C 0.00 0.14 6.85 39.91 0.27 0.42 16 8 C 0.59 23.38 7.89 86.56 0.68 24.06 16 9 O -0.57 -26.08 17.19 -4.16 -0.07 -26.15 16 10 N -0.61 -22.44 3.01 -767.61 -2.31 -24.75 16 11 C 0.08 2.41 4.60 86.79 0.40 2.81 16 12 C 0.14 4.62 5.53 46.94 0.26 4.88 16 13 H 0.14 3.78 8.14 -2.39 -0.02 3.77 16 14 C -0.13 -3.78 6.82 33.47 0.23 -3.56 16 15 C 0.10 3.88 5.19 46.94 0.24 4.12 16 16 H 0.12 4.45 8.06 -2.39 -0.02 4.43 16 17 C 0.19 9.21 4.76 87.16 0.41 9.63 16 18 N -0.61 -28.71 3.02 -648.58 -1.96 -30.67 16 19 C -0.23 -12.13 10.37 84.03 0.87 -11.25 16 20 H 0.10 4.62 7.83 -2.91 -0.02 4.59 16 21 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 22 N -0.96 -58.05 10.56 21.65 0.23 -57.82 16 23 Si 0.98 44.79 29.55 68.60 2.03 46.82 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C -0.11 -3.64 10.12 22.55 0.23 -3.41 16 28 C -0.15 -4.13 5.98 -21.36 -0.13 -4.26 16 29 C -0.03 -0.77 5.88 -19.83 -0.12 -0.88 16 30 C -0.11 -1.94 9.93 71.23 0.71 -1.23 16 31 C -0.15 -2.82 9.25 22.02 0.20 -2.61 16 32 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.08 0.66 8.08 -2.38 -0.02 0.65 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.06 1.96 7.40 -2.39 -0.02 1.94 16 37 H 0.10 2.23 7.22 -2.39 -0.02 2.22 16 38 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 40 H -0.01 -0.33 7.67 -2.38 -0.02 -0.35 16 41 H 0.02 1.27 7.46 -2.38 -0.02 1.25 16 42 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 1.07 8.08 -2.38 -0.02 1.06 16 46 H 0.06 1.14 7.85 -2.38 -0.02 1.12 16 47 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -74.35 377.89 3.24 -71.11 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.53 Total: 25.22 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.83 Total: 13.84 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -5.07 Total: -130.84 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.07 Total: -26.15 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.35 3.24 -71.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032546210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.530 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds