Wall clock time and date at job start Tue Mar 31 2020 22:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38944 * 119.69125 * 2 1 4 4 C 1.37674 * 120.64740 * 179.97438 * 3 2 1 5 5 C 1.39233 * 119.80686 * 0.02791 * 4 3 2 6 6 N 1.37476 * 133.17434 * 180.28910 * 5 4 3 7 7 H 0.97002 * 125.61577 * 359.96489 * 6 5 4 8 8 C 1.38148 * 108.78644 * 180.12808 * 6 5 4 9 9 C 1.47058 * 125.43388 * 179.86199 * 8 6 5 10 10 O 1.21641 * 120.00139 * 179.68887 * 9 8 6 11 11 N 1.34780 * 119.99564 * 359.69429 * 9 8 6 12 12 C 1.49759 * 127.90615 * 0.28521 * 11 9 8 13 13 C 1.56022 * 105.31888 * 181.25901 * 12 11 9 14 14 H 1.08999 * 116.24911 * 160.00806 * 13 12 11 15 15 C 1.57082 * 99.60616 * 33.12604 * 13 12 11 16 16 C 1.49294 * 126.94136 * 179.97438 * 11 9 8 17 17 H 1.09002 * 116.15371 * 16.70409 * 16 11 9 18 18 C 1.56014 * 104.09328 * 247.55864 * 16 11 9 19 19 N 1.47870 * 105.10678 * 287.92674 * 18 16 11 20 20 C 1.36939 * 126.94175 * 181.96919 * 19 18 16 21 21 H 1.08004 * 119.99707 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00481 * 0.02562 * 20 19 18 23 23 N 1.31620 * 119.99654 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47010 * 89.99952 * 24 22 20 26 26 H 1.48504 * 109.46788 * 209.99720 * 24 22 20 27 27 H 1.48494 * 109.47246 * 329.99799 * 24 22 20 28 28 C 1.35867 * 109.13744 * 359.60088 * 8 6 5 29 29 C 1.40843 * 119.43153 * 0.02562 * 5 4 3 30 30 C 1.36436 * 119.69204 * 180.02562 * 2 1 3 31 31 C 1.50695 * 120.08390 * 359.97386 * 30 2 1 32 32 H 1.08994 * 109.46884 * 89.99467 * 1 2 3 33 33 H 1.08994 * 109.46884 * 209.99588 * 1 2 3 34 34 H 1.09001 * 109.46727 * 329.99433 * 1 2 3 35 35 H 1.07998 * 119.67520 * 0.02889 * 3 2 1 36 36 H 1.08000 * 120.09147 * 180.02562 * 4 3 2 37 37 H 1.08994 * 109.93901 * 62.41902 * 12 11 9 38 38 H 1.09000 * 110.56908 * 300.41731 * 12 11 9 39 39 H 1.08997 * 112.36479 * 191.71340 * 15 13 12 40 40 H 1.09006 * 112.36430 * 64.28415 * 15 13 12 41 41 H 1.09006 * 110.31678 * 46.82922 * 18 16 11 42 42 H 1.09004 * 110.31753 * 168.91164 * 18 16 11 43 43 H 0.97001 * 119.99513 * 180.02562 * 23 22 20 44 44 H 1.08003 * 126.13764 * 180.21518 * 28 8 6 45 45 H 1.09003 * 109.47314 * 270.00191 * 31 30 2 46 46 H 1.09002 * 109.47232 * 30.00660 * 31 30 2 47 47 H 1.09003 * 109.47069 * 150.00776 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2070 0.0000 4 6 3.5718 1.2300 0.0005 5 6 4.2840 0.0336 0.0005 6 7 5.6266 -0.2619 0.0060 7 1 6.3477 0.3868 0.0107 8 6 5.7800 -1.6348 -0.0001 9 6 7.0655 -2.3491 0.0001 10 8 7.0855 -3.5653 0.0001 11 7 8.2214 -1.6560 0.0004 12 6 8.4029 -0.1695 0.0064 13 6 9.9461 0.0576 -0.0293 14 1 10.2814 1.0389 -0.3648 15 6 10.3734 -1.1816 -0.8949 16 6 9.6046 -2.2180 0.0011 17 1 9.6970 -3.2671 -0.2797 18 6 10.1733 -1.8254 1.3999 19 7 10.4071 -0.3672 1.3254 20 6 10.9385 0.4320 2.3022 21 1 11.0598 1.4908 2.1268 22 6 11.3214 -0.1185 3.5175 23 7 11.1732 -1.4087 3.7313 24 14 12.0456 0.9720 4.8501 25 1 10.9538 1.4917 5.7120 26 1 12.9941 0.1816 5.6752 27 1 12.7647 2.1095 4.2223 28 6 4.5538 -2.2200 -0.0005 29 6 3.5839 -1.1885 -0.0007 30 6 2.1829 -1.1852 -0.0005 31 6 1.4243 -2.4873 -0.0005 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5139 35 1 1.6450 2.1363 0.0005 36 1 4.0976 2.1733 0.0009 37 1 7.9792 0.2530 0.9175 38 1 7.9344 0.2771 -0.8706 39 1 11.4513 -1.3432 -0.8842 40 1 9.9771 -1.1353 -1.9094 41 1 9.4477 -2.0529 2.1809 42 1 11.1093 -2.3512 1.5890 43 1 11.4404 -1.7934 4.5808 44 1 4.3547 -3.2816 -0.0014 45 1 1.2417 -2.8015 1.0272 46 1 0.4722 -2.3532 -0.5140 47 1 2.0103 -3.2492 -0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032559612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:00 Heat of formation + Delta-G solvation = 81.984321 kcal Electronic energy + Delta-G solvation = -29422.484612 eV Core-core repulsion = 25572.271947 eV Total energy + Delta-G solvation = -3850.212664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63490 -39.97845 -38.14755 -37.31184 -33.76374 -33.30843 -32.01327 -31.17766 -29.86627 -29.26841 -28.71604 -27.29873 -25.89205 -25.39850 -24.26636 -22.85425 -21.26346 -20.76595 -20.11967 -19.88756 -19.01145 -17.73133 -16.95180 -16.57225 -15.86627 -15.47672 -15.21776 -15.11465 -14.72166 -14.44963 -14.14233 -13.84093 -13.64598 -13.56083 -13.33276 -13.14007 -12.91091 -12.82526 -12.55706 -12.27719 -12.09483 -12.02604 -11.83349 -11.44445 -11.42238 -11.14774 -11.02991 -10.94942 -10.92373 -10.82613 -10.72374 -10.38116 -10.16780 -9.84252 -9.73910 -9.71412 -8.80956 -8.30025 -8.07278 -7.63678 -7.04659 -5.85851 -3.21671 0.79852 1.55606 2.20905 2.94206 3.19554 3.31635 3.36201 3.39224 3.57171 3.78613 4.32836 4.52605 4.60838 4.78772 4.93053 4.96742 5.02977 5.08582 5.17319 5.22468 5.25466 5.42162 5.43017 5.46362 5.49243 5.56231 5.61738 5.62824 5.67138 5.68492 5.75270 5.81344 5.89089 6.02136 6.08121 6.10514 6.24661 6.26514 6.37501 6.43465 6.50167 6.62467 6.66139 6.71490 7.08188 7.31988 7.37243 7.43035 7.62861 7.84253 7.99914 8.37083 9.00176 9.61208 10.28718 11.25991 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.002976 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.483768 B = 9404.792630 C =10177.442402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.087 4.087 4 C -0.133 4.133 5 C 0.106 3.894 6 N -0.576 5.576 7 H 0.420 0.580 8 C 0.035 3.965 9 C 0.595 3.405 10 O -0.535 6.535 11 N -0.606 5.606 12 C 0.071 3.929 13 C 0.145 3.855 14 H 0.111 0.889 15 C -0.150 4.150 16 C 0.099 3.901 17 H 0.117 0.883 18 C 0.172 3.828 19 N -0.595 5.595 20 C -0.238 4.238 21 H 0.081 0.919 22 C -0.003 4.003 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C -0.119 4.119 29 C -0.111 4.111 30 C -0.030 4.030 31 C -0.117 4.117 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.255 0.745 44 H 0.153 0.847 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 3.712 -10.815 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.153 4.153 5 C -0.004 4.004 6 N -0.184 5.184 7 H 0.264 0.736 8 C -0.075 4.075 9 C 0.384 3.616 10 O -0.413 6.413 11 N -0.340 5.340 12 C -0.055 4.055 13 C 0.035 3.965 14 H 0.128 0.872 15 C -0.189 4.189 16 C -0.003 4.003 17 H 0.134 0.866 18 C 0.047 3.953 19 N -0.319 5.319 20 C -0.366 4.366 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.562 5.562 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.146 4.146 29 C -0.116 4.116 30 C -0.031 4.031 31 C -0.173 4.173 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.170 0.830 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.155 3.045 -10.511 19.512 hybrid contribution 0.755 1.015 0.934 1.572 sum -15.400 4.060 -9.577 18.584 Atomic orbital electron populations 1.20730 0.91379 1.02481 1.01855 1.19171 0.95810 0.92316 1.05259 1.20672 0.92787 0.97412 0.99814 1.20025 0.93807 0.94847 1.06641 1.18357 0.83271 0.95498 1.03306 1.42641 1.06319 1.06512 1.62966 0.73635 1.20279 0.95214 0.82245 1.09743 1.16760 0.81174 0.86253 0.77435 1.90810 1.86260 1.12167 1.52080 1.49562 1.05710 1.07856 1.70832 1.23874 1.02279 0.79768 0.99547 1.23136 0.88778 0.96731 0.87840 0.87173 1.24162 1.00710 0.97049 0.96995 1.24377 0.78626 0.97838 0.99463 0.86565 1.21971 0.99042 0.84305 0.89959 1.45253 1.72462 1.04060 1.10164 1.19029 1.34687 0.90658 0.92178 0.90093 1.24842 1.01139 0.96131 0.97940 1.69912 1.52102 1.09901 1.24334 0.86104 0.78575 0.79210 0.81727 1.21553 1.21573 1.20575 1.20781 0.89122 0.99133 1.05543 1.17995 0.92851 0.92355 1.08408 1.18966 0.90950 0.95095 0.98082 1.20815 0.99670 0.94420 1.02413 0.91691 0.91577 0.91926 0.85779 0.86088 0.90847 0.92713 0.89342 0.91502 0.93331 0.92291 0.93433 0.82951 0.90994 0.91336 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.15 36.01 0.33 -0.50 16 2 C -0.12 -1.34 5.84 -105.01 -0.61 -1.95 16 3 C -0.09 -0.92 9.66 -39.53 -0.38 -1.30 16 4 C -0.13 -1.56 10.08 -39.42 -0.40 -1.96 16 5 C 0.11 1.50 7.25 -83.98 -0.61 0.89 16 6 N -0.58 -8.43 5.83 -7.36 -0.04 -8.47 16 7 H 0.42 5.55 5.01 -40.82 -0.20 5.35 16 8 C 0.04 0.59 6.85 -82.29 -0.56 0.03 16 9 C 0.60 11.36 7.89 -12.68 -0.10 11.26 16 10 O -0.54 -11.56 17.19 5.24 0.09 -11.47 16 11 N -0.61 -11.06 3.01 -156.60 -0.47 -11.53 16 12 C 0.07 1.14 4.60 -0.61 0.00 1.13 16 13 C 0.14 2.52 5.53 -62.56 -0.35 2.17 16 14 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 15 C -0.15 -2.40 6.82 -22.29 -0.15 -2.55 16 16 C 0.10 1.86 5.19 -62.54 -0.32 1.54 16 17 H 0.12 2.12 8.06 -51.93 -0.42 1.70 16 18 C 0.17 4.03 4.76 -1.68 -0.01 4.02 16 19 N -0.60 -13.76 3.02 -156.35 -0.47 -14.23 16 20 C -0.24 -6.13 10.37 -15.06 -0.16 -6.29 16 21 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 22 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 23 N -0.92 -26.26 10.56 55.49 0.59 -25.68 16 24 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 C -0.12 -1.86 10.12 -39.15 -0.40 -2.25 16 29 C -0.11 -1.61 5.98 -106.93 -0.64 -2.25 16 30 C -0.03 -0.37 5.88 -104.57 -0.62 -0.98 16 31 C -0.12 -1.11 9.07 36.00 0.33 -0.78 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.46 6.64 -51.93 -0.34 0.12 16 34 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.07 1.29 7.40 -51.93 -0.38 0.91 16 38 H 0.05 0.71 7.22 -51.93 -0.37 0.33 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 42 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.15 2.22 8.06 -52.48 -0.42 1.80 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.52 6.65 -51.93 -0.35 0.18 16 47 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -31.71 374.06 -11.06 -42.77 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.61 Total: 6.60 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.75 Total: 0.06 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.40 Total: -59.91 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.71 -11.06 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032559612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.753 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds