Wall clock time and date at job start Tue Mar 31 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38944 * 119.69125 * 2 1 4 4 C 1.37674 * 120.64740 * 179.97438 * 3 2 1 5 5 C 1.39233 * 119.80686 * 0.02791 * 4 3 2 6 6 N 1.37476 * 133.17434 * 180.28910 * 5 4 3 7 7 H 0.97002 * 125.61577 * 359.96489 * 6 5 4 8 8 C 1.38148 * 108.78644 * 180.12808 * 6 5 4 9 9 C 1.47058 * 125.43388 * 179.86199 * 8 6 5 10 10 O 1.21641 * 120.00139 * 179.68887 * 9 8 6 11 11 N 1.34780 * 119.99564 * 359.69429 * 9 8 6 12 12 C 1.49759 * 127.90615 * 0.28521 * 11 9 8 13 13 C 1.56022 * 105.31888 * 181.25901 * 12 11 9 14 14 H 1.08999 * 116.24911 * 160.00806 * 13 12 11 15 15 C 1.57082 * 99.60616 * 33.12604 * 13 12 11 16 16 C 1.49294 * 126.94136 * 179.97438 * 11 9 8 17 17 H 1.09002 * 116.15371 * 16.70409 * 16 11 9 18 18 C 1.56014 * 104.09328 * 247.55864 * 16 11 9 19 19 N 1.47870 * 105.10678 * 287.92674 * 18 16 11 20 20 C 1.36939 * 126.94175 * 181.96919 * 19 18 16 21 21 H 1.08004 * 119.99707 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00481 * 0.02562 * 20 19 18 23 23 N 1.31620 * 119.99654 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47010 * 89.99952 * 24 22 20 26 26 H 1.48504 * 109.46788 * 209.99720 * 24 22 20 27 27 H 1.48494 * 109.47246 * 329.99799 * 24 22 20 28 28 C 1.35867 * 109.13744 * 359.60088 * 8 6 5 29 29 C 1.40843 * 119.43153 * 0.02562 * 5 4 3 30 30 C 1.36436 * 119.69204 * 180.02562 * 2 1 3 31 31 C 1.50695 * 120.08390 * 359.97386 * 30 2 1 32 32 H 1.08994 * 109.46884 * 89.99467 * 1 2 3 33 33 H 1.08994 * 109.46884 * 209.99588 * 1 2 3 34 34 H 1.09001 * 109.46727 * 329.99433 * 1 2 3 35 35 H 1.07998 * 119.67520 * 0.02889 * 3 2 1 36 36 H 1.08000 * 120.09147 * 180.02562 * 4 3 2 37 37 H 1.08994 * 109.93901 * 62.41902 * 12 11 9 38 38 H 1.09000 * 110.56908 * 300.41731 * 12 11 9 39 39 H 1.08997 * 112.36479 * 191.71340 * 15 13 12 40 40 H 1.09006 * 112.36430 * 64.28415 * 15 13 12 41 41 H 1.09006 * 110.31678 * 46.82922 * 18 16 11 42 42 H 1.09004 * 110.31753 * 168.91164 * 18 16 11 43 43 H 0.97001 * 119.99513 * 180.02562 * 23 22 20 44 44 H 1.08003 * 126.13764 * 180.21518 * 28 8 6 45 45 H 1.09003 * 109.47314 * 270.00191 * 31 30 2 46 46 H 1.09002 * 109.47232 * 30.00660 * 31 30 2 47 47 H 1.09003 * 109.47069 * 150.00776 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2070 0.0000 4 6 3.5718 1.2300 0.0005 5 6 4.2840 0.0336 0.0005 6 7 5.6266 -0.2619 0.0060 7 1 6.3477 0.3868 0.0107 8 6 5.7800 -1.6348 -0.0001 9 6 7.0655 -2.3491 0.0001 10 8 7.0855 -3.5653 0.0001 11 7 8.2214 -1.6560 0.0004 12 6 8.4029 -0.1695 0.0064 13 6 9.9461 0.0576 -0.0293 14 1 10.2814 1.0389 -0.3648 15 6 10.3734 -1.1816 -0.8949 16 6 9.6046 -2.2180 0.0011 17 1 9.6970 -3.2671 -0.2797 18 6 10.1733 -1.8254 1.3999 19 7 10.4071 -0.3672 1.3254 20 6 10.9385 0.4320 2.3022 21 1 11.0598 1.4908 2.1268 22 6 11.3214 -0.1185 3.5175 23 7 11.1732 -1.4087 3.7313 24 14 12.0456 0.9720 4.8501 25 1 10.9538 1.4917 5.7120 26 1 12.9941 0.1816 5.6752 27 1 12.7647 2.1095 4.2223 28 6 4.5538 -2.2200 -0.0005 29 6 3.5839 -1.1885 -0.0007 30 6 2.1829 -1.1852 -0.0005 31 6 1.4243 -2.4873 -0.0005 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5139 35 1 1.6450 2.1363 0.0005 36 1 4.0976 2.1733 0.0009 37 1 7.9792 0.2530 0.9175 38 1 7.9344 0.2771 -0.8706 39 1 11.4513 -1.3432 -0.8842 40 1 9.9771 -1.1353 -1.9094 41 1 9.4477 -2.0529 2.1809 42 1 11.1093 -2.3512 1.5890 43 1 11.4404 -1.7934 4.5808 44 1 4.3547 -3.2816 -0.0014 45 1 1.2417 -2.8015 1.0272 46 1 0.4722 -2.3532 -0.5140 47 1 2.0103 -3.2492 -0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032559612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:59 Heat of formation + Delta-G solvation = 64.260005 kcal Electronic energy + Delta-G solvation = -29423.253196 eV Core-core repulsion = 25572.271947 eV Total energy + Delta-G solvation = -3850.981248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.74279 -41.42048 -39.50679 -38.42801 -35.53943 -34.21235 -33.55138 -32.33700 -30.96629 -30.78367 -30.34098 -28.26128 -27.10122 -26.67645 -25.79909 -24.23094 -22.35921 -21.95602 -21.44945 -21.22690 -20.45115 -19.25603 -18.21531 -18.04204 -17.39191 -16.85590 -16.53941 -16.13739 -16.00562 -15.72103 -15.57425 -15.10232 -14.99511 -14.86268 -14.34743 -14.29188 -13.90002 -13.83394 -13.62823 -13.50431 -13.47531 -13.30209 -13.16396 -12.90933 -12.74402 -12.73154 -12.42353 -12.25874 -12.20066 -12.10068 -11.97213 -11.89347 -11.67728 -11.59304 -11.36718 -10.79597 -10.75880 -9.79171 -9.11031 -8.97892 -8.63827 -7.88655 -5.25249 -0.27200 0.62797 1.04714 1.44786 1.45785 1.54649 1.63526 1.98095 2.22173 2.44729 2.85116 3.20312 3.29704 3.40655 3.66415 3.69429 3.75905 3.93828 4.02758 4.05711 4.13260 4.25530 4.29266 4.31868 4.39006 4.47022 4.58580 4.61757 4.73047 4.77482 4.84135 4.84873 4.94186 4.94543 4.98626 5.04627 5.06136 5.14949 5.25837 5.29131 5.39484 5.41335 5.48361 5.60045 5.62816 5.68131 5.80587 6.04575 6.15476 6.36244 6.41525 6.89642 6.97928 7.66100 8.35544 9.22389 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.002976 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.483768 B = 9404.792630 C =10177.442402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.144 4.144 5 C 0.096 3.904 6 N -0.572 5.572 7 H 0.425 0.575 8 C 0.007 3.993 9 C 0.591 3.409 10 O -0.574 6.574 11 N -0.609 5.609 12 C 0.078 3.922 13 C 0.141 3.859 14 H 0.145 0.855 15 C -0.126 4.126 16 C 0.101 3.899 17 H 0.117 0.883 18 C 0.186 3.814 19 N -0.615 5.615 20 C -0.232 4.232 21 H 0.099 0.901 22 C -0.071 4.071 23 N -0.956 5.956 24 Si 0.977 3.023 25 H -0.292 1.292 26 H -0.302 1.302 27 H -0.260 1.260 28 C -0.118 4.118 29 C -0.136 4.136 30 C -0.044 4.044 31 C -0.116 4.116 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.104 0.896 41 H -0.006 1.006 42 H 0.023 0.977 43 H 0.244 0.756 44 H 0.151 0.849 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.658 6.950 -12.899 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.165 4.165 5 C -0.015 4.015 6 N -0.181 5.181 7 H 0.269 0.731 8 C -0.103 4.103 9 C 0.381 3.619 10 O -0.454 6.454 11 N -0.341 5.341 12 C -0.046 4.046 13 C 0.035 3.965 14 H 0.162 0.838 15 C -0.165 4.165 16 C -0.002 4.002 17 H 0.135 0.865 18 C 0.060 3.940 19 N -0.339 5.339 20 C -0.360 4.360 21 H 0.116 0.884 22 C -0.264 4.264 23 N -0.605 5.605 24 Si 0.806 3.194 25 H -0.219 1.219 26 H -0.229 1.229 27 H -0.184 1.184 28 C -0.145 4.145 29 C -0.140 4.140 30 C -0.045 4.045 31 C -0.172 4.172 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.175 0.825 36 H 0.160 0.840 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.013 0.987 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.169 0.831 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.430 6.350 -12.650 23.238 hybrid contribution 1.272 0.068 1.544 2.002 sum -17.157 6.418 -11.106 21.422 Atomic orbital electron populations 1.20804 0.88909 1.03629 1.03026 1.19632 0.97671 0.91837 1.03524 1.21159 0.92493 0.98744 0.97370 1.20372 0.94499 0.94805 1.06780 1.18741 0.82920 0.96432 1.03387 1.42479 1.06867 1.05549 1.63212 0.73145 1.19926 0.94156 0.83394 1.12788 1.17115 0.82059 0.86037 0.76640 1.90768 1.86943 1.13796 1.53931 1.49604 1.05176 1.08852 1.70477 1.23802 1.01454 0.78493 1.00823 1.23585 0.89176 0.98796 0.84982 0.83781 1.24071 1.00398 0.94178 0.97880 1.24243 0.79599 0.99062 0.97296 0.86485 1.21546 0.96062 0.85030 0.91390 1.45489 1.72424 1.03737 1.12226 1.19543 1.32388 0.91647 0.92459 0.88363 1.25685 1.02913 0.97208 1.00556 1.70160 1.54393 1.11812 1.24147 0.85092 0.77437 0.77895 0.78989 1.21938 1.22904 1.18413 1.20943 0.89498 0.99574 1.04526 1.18224 0.93955 0.92046 1.09800 1.19318 0.90243 0.96874 0.98093 1.20860 1.00283 0.93173 1.02916 0.90355 0.90928 0.90410 0.82519 0.83961 0.92515 0.88218 0.89344 0.87755 0.98732 0.95899 0.94703 0.83099 0.90568 0.89119 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.15 71.24 0.65 -0.57 16 2 C -0.13 -2.31 5.84 -20.11 -0.12 -2.43 16 3 C -0.08 -1.36 9.66 22.31 0.22 -1.15 16 4 C -0.14 -3.00 10.08 22.38 0.23 -2.77 16 5 C 0.10 2.58 7.25 39.14 0.28 2.87 16 6 N -0.57 -16.38 5.83 -177.19 -1.03 -17.41 16 7 H 0.42 10.66 5.01 -92.71 -0.46 10.19 16 8 C 0.01 0.25 6.85 39.91 0.27 0.52 16 9 C 0.59 23.34 7.89 86.56 0.68 24.02 16 10 O -0.57 -26.09 17.19 -4.16 -0.07 -26.16 16 11 N -0.61 -22.37 3.01 -767.61 -2.31 -24.69 16 12 C 0.08 2.39 4.60 86.79 0.40 2.79 16 13 C 0.14 4.60 5.53 46.94 0.26 4.86 16 14 H 0.14 3.76 8.14 -2.39 -0.02 3.75 16 15 C -0.13 -3.77 6.82 33.47 0.23 -3.54 16 16 C 0.10 3.87 5.19 46.94 0.24 4.11 16 17 H 0.12 4.44 8.06 -2.39 -0.02 4.42 16 18 C 0.19 9.19 4.76 87.16 0.41 9.60 16 19 N -0.61 -28.62 3.02 -648.58 -1.96 -30.58 16 20 C -0.23 -11.97 10.37 84.03 0.87 -11.10 16 21 H 0.10 4.63 7.83 -2.91 -0.02 4.61 16 22 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 23 N -0.96 -58.04 10.56 21.65 0.23 -57.81 16 24 Si 0.98 44.80 29.55 68.60 2.03 46.83 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 28 C -0.12 -3.78 10.12 22.55 0.23 -3.55 16 29 C -0.14 -3.85 5.98 -21.36 -0.13 -3.98 16 30 C -0.04 -1.01 5.88 -19.83 -0.12 -1.12 16 31 C -0.12 -2.03 9.07 71.23 0.65 -1.38 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.75 6.64 -2.39 -0.02 0.74 16 34 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 35 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.06 1.96 7.40 -2.39 -0.02 1.94 16 38 H 0.10 2.22 7.22 -2.39 -0.02 2.20 16 39 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 41 H -0.01 -0.33 7.67 -2.38 -0.02 -0.35 16 42 H 0.02 1.27 7.46 -2.38 -0.02 1.25 16 43 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.15 6.65 -2.39 -0.02 1.13 16 47 H 0.06 1.15 7.85 -2.39 -0.02 1.14 16 Total: -1.00 -74.59 374.06 3.15 -71.44 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.54 Total: 24.66 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 5.73 Total: 13.71 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.07 Total: -130.48 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.07 Total: -26.16 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.59 3.15 -71.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032559612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.705 kcal (2) G-P(sol) polarization free energy of solvation -74.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds