Wall clock time and date at job start Tue Mar 31 2020 22:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36836 * 125.03414 * 2 1 4 4 H 0.96999 * 125.06484 * 0.03679 * 3 2 1 5 5 C 1.37684 * 109.87334 * 180.02562 * 3 2 1 6 6 C 1.39128 * 133.50279 * 180.02562 * 5 3 2 7 7 C 1.37755 * 119.77624 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.66739 * 359.97438 * 7 6 5 9 9 C 1.36629 * 120.52715 * 359.97438 * 8 7 6 10 10 C 1.39633 * 119.76349 * 359.69973 * 9 8 7 11 11 C 1.34234 * 125.03954 * 179.97438 * 2 1 3 12 12 C 1.50707 * 126.50008 * 0.02562 * 11 2 1 13 13 C 1.50695 * 109.47011 * 90.02171 * 12 11 2 14 14 O 1.21274 * 120.00413 * 0.27295 * 13 12 11 15 15 N 1.34784 * 119.99635 * 180.02562 * 13 12 11 16 16 C 1.47866 * 126.94443 * 359.68725 * 15 13 12 17 17 C 1.56002 * 105.11369 * 181.87594 * 16 15 13 18 18 H 1.09001 * 116.80915 * 159.41382 * 17 16 15 19 19 C 1.57088 * 99.47328 * 33.15958 * 17 16 15 20 20 C 1.49286 * 126.94282 * 179.97438 * 15 13 12 21 21 H 1.09009 * 116.15373 * 16.70370 * 20 15 13 22 22 C 1.56020 * 104.09449 * 246.69729 * 20 15 13 23 23 N 1.47867 * 105.10520 * 288.76893 * 22 20 15 24 24 C 1.36932 * 126.94231 * 181.97842 * 23 22 20 25 25 H 1.08010 * 119.99644 * 180.02562 * 24 23 22 26 26 C 1.38812 * 120.00605 * 0.02562 * 24 23 22 27 27 N 1.31623 * 119.99360 * 0.02562 * 26 24 23 28 28 Si 1.86792 * 120.00490 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.46957 * 59.99908 * 28 26 24 30 30 H 1.48496 * 109.47462 * 180.02562 * 28 26 24 31 31 H 1.48507 * 109.47038 * 300.00372 * 28 26 24 32 32 H 1.09004 * 109.46968 * 270.00052 * 1 2 3 33 33 H 1.08998 * 109.47004 * 29.99831 * 1 2 3 34 34 H 1.08999 * 109.46988 * 150.00364 * 1 2 3 35 35 H 1.07998 * 120.11509 * 359.94321 * 6 5 3 36 36 H 1.08003 * 119.66513 * 180.02562 * 7 6 5 37 37 H 1.07998 * 119.73471 * 180.02562 * 8 7 6 38 38 H 1.07993 * 120.11578 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.46877 * 330.02044 * 12 11 2 40 40 H 1.09002 * 109.46993 * 210.02391 * 12 11 2 41 41 H 1.08997 * 110.31475 * 300.90429 * 16 15 13 42 42 H 1.08996 * 110.31814 * 63.09363 * 16 15 13 43 43 H 1.08995 * 112.36341 * 191.51099 * 19 17 16 44 44 H 1.09003 * 112.44617 * 64.10236 * 19 17 16 45 45 H 1.08999 * 110.31078 * 47.67695 * 22 20 15 46 46 H 1.09001 * 110.31459 * 169.85738 * 22 20 15 47 47 H 0.97000 * 119.99695 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9623 2.0325 0.0005 5 6 3.6214 0.7603 -0.0006 6 6 4.8097 1.4839 -0.0004 7 6 6.0159 0.8184 -0.0006 8 6 6.0590 -0.5692 -0.0005 9 6 4.9042 -1.2994 0.0004 10 6 3.6705 -0.6454 0.0075 11 6 2.2776 -1.0990 0.0005 12 6 1.8004 -2.5286 0.0006 13 6 1.6424 -3.0055 -1.4202 14 8 1.8974 -2.2599 -2.3420 15 7 1.2225 -4.2623 -1.6663 16 6 0.8823 -5.2975 -0.6667 17 6 0.5091 -6.5617 -1.5012 18 1 0.5601 -7.5220 -0.9881 19 6 1.4823 -6.3645 -2.7184 20 6 1.0126 -4.8925 -3.0032 21 1 1.4780 -4.3886 -3.8504 22 6 -0.5290 -5.1208 -3.0778 23 7 -0.8027 -6.2180 -2.1250 24 6 -2.0146 -6.8006 -1.8667 25 1 -2.0866 -7.5992 -1.1431 26 6 -3.1507 -6.3649 -2.5349 27 7 -3.0628 -5.3921 -3.4171 28 14 -4.8039 -7.1602 -2.1830 29 1 -5.1423 -6.9845 -0.7478 30 1 -5.8496 -6.5198 -3.0206 31 1 -4.7340 -8.6091 -2.5013 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 4.7867 2.5636 -0.0006 36 1 6.9373 1.3819 0.0000 37 1 7.0130 -1.0755 -0.0003 38 1 4.9455 -2.3786 0.0009 39 1 0.8408 -2.5912 0.5138 40 1 2.5292 -3.1548 0.5152 41 1 1.7411 -5.5035 -0.0279 42 1 0.0307 -4.9781 -0.0660 43 1 1.2558 -7.0392 -3.5440 44 1 2.5309 -6.4162 -2.4256 45 1 -1.0602 -4.2176 -2.7777 46 1 -0.8198 -5.4142 -4.0866 47 1 -3.8568 -5.0874 -3.8837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032596537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:25 Heat of formation + Delta-G solvation = 78.521352 kcal Electronic energy + Delta-G solvation = -29485.836004 eV Core-core repulsion = 25635.473174 eV Total energy + Delta-G solvation = -3850.362830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36509 -39.91364 -37.76610 -37.01866 -33.57809 -33.13509 -31.53084 -31.00136 -30.14157 -29.06997 -28.53129 -27.82616 -26.09592 -25.15149 -23.41102 -22.24161 -21.44150 -20.84370 -19.80623 -19.11047 -18.23777 -17.57433 -17.10138 -16.46090 -16.22440 -15.62544 -15.13528 -14.94454 -14.75176 -14.40485 -14.08520 -13.87568 -13.80623 -13.31776 -13.23138 -12.97346 -12.76436 -12.52202 -12.25300 -12.11249 -11.92937 -11.78121 -11.61745 -11.43823 -11.29549 -11.24912 -10.97534 -10.82804 -10.80230 -10.73204 -10.55632 -10.24336 -10.07621 -9.64189 -9.61260 -9.22710 -8.69419 -8.11004 -7.90193 -7.54084 -6.91867 -5.76397 -3.10927 1.14350 1.65632 2.61449 3.07974 3.20873 3.36843 3.41270 3.43167 3.58787 3.96600 4.41975 4.66763 4.76237 4.94704 4.96892 5.06560 5.19001 5.21722 5.22573 5.28809 5.32624 5.44039 5.49928 5.51979 5.57675 5.65686 5.68518 5.77704 5.81395 5.83063 5.92618 5.96154 5.97755 6.16485 6.22951 6.34017 6.45593 6.47980 6.55081 6.62722 6.63128 6.72112 6.77852 6.87754 7.18954 7.43588 7.52052 7.54528 7.72684 8.10426 8.22268 8.76377 9.10612 9.71482 10.41242 11.35417 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002865 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.800986 B = 9769.875591 C =10631.198811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.095 3.905 3 N -0.593 5.593 4 H 0.412 0.588 5 C 0.096 3.904 6 C -0.132 4.132 7 C -0.105 4.105 8 C -0.150 4.150 9 C -0.068 4.068 10 C -0.087 4.087 11 C -0.146 4.146 12 C -0.060 4.060 13 C 0.527 3.473 14 O -0.546 6.546 15 N -0.610 5.610 16 C 0.085 3.915 17 C 0.140 3.860 18 H 0.105 0.895 19 C -0.153 4.153 20 C 0.098 3.902 21 H 0.111 0.889 22 C 0.176 3.824 23 N -0.597 5.597 24 C -0.231 4.231 25 H 0.080 0.920 26 C -0.006 4.006 27 N -0.919 5.919 28 Si 0.912 3.088 29 H -0.285 1.285 30 H -0.291 1.291 31 H -0.285 1.285 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.056 9.740 9.354 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.012 4.012 3 N -0.196 5.196 4 H 0.249 0.751 5 C -0.010 4.010 6 C -0.153 4.153 7 C -0.124 4.124 8 C -0.169 4.169 9 C -0.086 4.086 10 C -0.091 4.091 11 C -0.153 4.153 12 C -0.100 4.100 13 C 0.316 3.684 14 O -0.424 6.424 15 N -0.344 5.344 16 C -0.041 4.041 17 C 0.031 3.969 18 H 0.123 0.877 19 C -0.193 4.193 20 C -0.004 4.004 21 H 0.129 0.871 22 C 0.051 3.949 23 N -0.321 5.321 24 C -0.359 4.359 25 H 0.098 0.902 26 C -0.203 4.203 27 N -0.566 5.566 28 Si 0.743 3.257 29 H -0.212 1.212 30 H -0.217 1.217 31 H -0.211 1.211 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.834 10.365 8.795 19.395 hybrid contribution -1.126 0.162 0.128 1.145 sum 12.708 10.526 8.923 18.759 Atomic orbital electron populations 1.20504 0.87623 1.04302 1.02903 1.20036 0.93234 0.85330 1.02645 1.41606 1.03989 1.07949 1.66087 0.75130 1.18166 0.84522 0.94090 1.04254 1.19963 0.89779 0.98697 1.06817 1.20725 0.96483 0.94418 1.00817 1.20568 0.97815 0.93942 1.04607 1.20253 0.90593 0.99486 0.98315 1.19004 0.93019 0.91901 1.05221 1.19335 0.90599 0.92991 1.12397 1.19902 1.02804 0.92409 0.94892 1.20153 0.76884 0.80287 0.91108 1.90666 1.51221 1.54037 1.46426 1.49246 1.65035 1.11177 1.08951 1.23238 0.98647 0.90474 0.91727 1.23155 0.86844 0.94440 0.92423 0.87674 1.24176 0.98196 0.96506 1.00376 1.24306 0.99354 0.91255 0.85519 0.87108 1.21886 0.87024 0.91516 0.94458 1.45220 1.01949 1.39542 1.45428 1.19000 0.83229 1.14108 1.19575 0.90230 1.24815 0.97924 0.98650 0.98893 1.69918 1.28188 1.29599 1.28884 0.86205 0.83504 0.78577 0.77462 1.21180 1.21671 1.21132 0.90433 0.91277 0.89379 0.86589 0.86085 0.86291 0.86399 0.88590 0.88795 0.92865 0.91164 0.89959 0.91713 0.93564 0.92819 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.98 36.00 0.36 -0.73 16 2 C 0.10 1.29 7.08 -81.77 -0.58 0.71 16 3 N -0.59 -7.13 6.07 -6.96 -0.04 -7.17 16 4 H 0.41 3.57 8.96 -40.82 -0.37 3.20 16 5 C 0.10 1.30 7.28 -83.99 -0.61 0.69 16 6 C -0.13 -1.50 10.08 -39.43 -0.40 -1.90 16 7 C -0.11 -1.13 10.01 -39.54 -0.40 -1.52 16 8 C -0.15 -1.72 9.97 -39.94 -0.40 -2.12 16 9 C -0.07 -0.91 10.05 -39.64 -0.40 -1.31 16 10 C -0.09 -1.30 6.35 -105.14 -0.67 -1.97 16 11 C -0.15 -2.21 4.81 -102.71 -0.49 -2.70 16 12 C -0.06 -0.87 5.06 -29.03 -0.15 -1.02 16 13 C 0.53 9.72 7.89 -10.98 -0.09 9.64 16 14 O -0.55 -12.02 16.38 5.56 0.09 -11.93 16 15 N -0.61 -11.17 2.95 -156.78 -0.46 -11.64 16 16 C 0.08 1.40 6.01 -1.69 -0.01 1.39 16 17 C 0.14 2.55 5.52 -62.57 -0.35 2.21 16 18 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 19 C -0.15 -2.60 6.81 -22.29 -0.15 -2.75 16 20 C 0.10 1.92 5.24 -62.54 -0.33 1.60 16 21 H 0.11 2.16 8.06 -51.92 -0.42 1.74 16 22 C 0.18 4.21 4.77 -1.68 -0.01 4.20 16 23 N -0.60 -14.16 3.03 -156.36 -0.47 -14.63 16 24 C -0.23 -6.06 10.37 -15.06 -0.16 -6.22 16 25 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 26 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 27 N -0.92 -26.53 10.56 55.49 0.59 -25.95 16 28 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 31 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.19 7.66 -51.93 -0.40 0.79 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.10 1.27 7.69 -51.93 -0.40 0.88 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 46 H 0.05 1.42 7.46 -51.93 -0.39 1.04 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -33.67 383.64 -11.44 -45.11 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.99 Total: 6.03 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -4.91 Total: -2.05 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.39 Total: -59.38 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.67 -11.44 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032596537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.634 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds