Wall clock time and date at job start Tue Mar 31 2020 22:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36836 * 125.03414 * 2 1 4 4 H 0.96999 * 125.06484 * 0.03679 * 3 2 1 5 5 C 1.37684 * 109.87334 * 180.02562 * 3 2 1 6 6 C 1.39128 * 133.50279 * 180.02562 * 5 3 2 7 7 C 1.37755 * 119.77624 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.66739 * 359.97438 * 7 6 5 9 9 C 1.36629 * 120.52715 * 359.97438 * 8 7 6 10 10 C 1.39633 * 119.76349 * 359.69973 * 9 8 7 11 11 C 1.34234 * 125.03954 * 179.97438 * 2 1 3 12 12 C 1.50707 * 126.50008 * 0.02562 * 11 2 1 13 13 C 1.50695 * 109.47011 * 90.02171 * 12 11 2 14 14 O 1.21274 * 120.00413 * 0.27295 * 13 12 11 15 15 N 1.34784 * 119.99635 * 180.02562 * 13 12 11 16 16 C 1.47866 * 126.94443 * 359.68725 * 15 13 12 17 17 C 1.56002 * 105.11369 * 181.87594 * 16 15 13 18 18 H 1.09001 * 116.80915 * 159.41382 * 17 16 15 19 19 C 1.57088 * 99.47328 * 33.15958 * 17 16 15 20 20 C 1.49286 * 126.94282 * 179.97438 * 15 13 12 21 21 H 1.09009 * 116.15373 * 16.70370 * 20 15 13 22 22 C 1.56020 * 104.09449 * 246.69729 * 20 15 13 23 23 N 1.47867 * 105.10520 * 288.76893 * 22 20 15 24 24 C 1.36932 * 126.94231 * 181.97842 * 23 22 20 25 25 H 1.08010 * 119.99644 * 180.02562 * 24 23 22 26 26 C 1.38812 * 120.00605 * 0.02562 * 24 23 22 27 27 N 1.31623 * 119.99360 * 0.02562 * 26 24 23 28 28 Si 1.86792 * 120.00490 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.46957 * 59.99908 * 28 26 24 30 30 H 1.48496 * 109.47462 * 180.02562 * 28 26 24 31 31 H 1.48507 * 109.47038 * 300.00372 * 28 26 24 32 32 H 1.09004 * 109.46968 * 270.00052 * 1 2 3 33 33 H 1.08998 * 109.47004 * 29.99831 * 1 2 3 34 34 H 1.08999 * 109.46988 * 150.00364 * 1 2 3 35 35 H 1.07998 * 120.11509 * 359.94321 * 6 5 3 36 36 H 1.08003 * 119.66513 * 180.02562 * 7 6 5 37 37 H 1.07998 * 119.73471 * 180.02562 * 8 7 6 38 38 H 1.07993 * 120.11578 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.46877 * 330.02044 * 12 11 2 40 40 H 1.09002 * 109.46993 * 210.02391 * 12 11 2 41 41 H 1.08997 * 110.31475 * 300.90429 * 16 15 13 42 42 H 1.08996 * 110.31814 * 63.09363 * 16 15 13 43 43 H 1.08995 * 112.36341 * 191.51099 * 19 17 16 44 44 H 1.09003 * 112.44617 * 64.10236 * 19 17 16 45 45 H 1.08999 * 110.31078 * 47.67695 * 22 20 15 46 46 H 1.09001 * 110.31459 * 169.85738 * 22 20 15 47 47 H 0.97000 * 119.99695 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9623 2.0325 0.0005 5 6 3.6214 0.7603 -0.0006 6 6 4.8097 1.4839 -0.0004 7 6 6.0159 0.8184 -0.0006 8 6 6.0590 -0.5692 -0.0005 9 6 4.9042 -1.2994 0.0004 10 6 3.6705 -0.6454 0.0075 11 6 2.2776 -1.0990 0.0005 12 6 1.8004 -2.5286 0.0006 13 6 1.6424 -3.0055 -1.4202 14 8 1.8974 -2.2599 -2.3420 15 7 1.2225 -4.2623 -1.6663 16 6 0.8823 -5.2975 -0.6667 17 6 0.5091 -6.5617 -1.5012 18 1 0.5601 -7.5220 -0.9881 19 6 1.4823 -6.3645 -2.7184 20 6 1.0126 -4.8925 -3.0032 21 1 1.4780 -4.3886 -3.8504 22 6 -0.5290 -5.1208 -3.0778 23 7 -0.8027 -6.2180 -2.1250 24 6 -2.0146 -6.8006 -1.8667 25 1 -2.0866 -7.5992 -1.1431 26 6 -3.1507 -6.3649 -2.5349 27 7 -3.0628 -5.3921 -3.4171 28 14 -4.8039 -7.1602 -2.1830 29 1 -5.1423 -6.9845 -0.7478 30 1 -5.8496 -6.5198 -3.0206 31 1 -4.7340 -8.6091 -2.5013 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 4.7867 2.5636 -0.0006 36 1 6.9373 1.3819 0.0000 37 1 7.0130 -1.0755 -0.0003 38 1 4.9455 -2.3786 0.0009 39 1 0.8408 -2.5912 0.5138 40 1 2.5292 -3.1548 0.5152 41 1 1.7411 -5.5035 -0.0279 42 1 0.0307 -4.9781 -0.0660 43 1 1.2558 -7.0392 -3.5440 44 1 2.5309 -6.4162 -2.4256 45 1 -1.0602 -4.2176 -2.7777 46 1 -0.8198 -5.4142 -4.0866 47 1 -3.8568 -5.0874 -3.8837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032596537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:24 Heat of formation + Delta-G solvation = 59.105478 kcal Electronic energy + Delta-G solvation = -29486.677939 eV Core-core repulsion = 25635.473174 eV Total energy + Delta-G solvation = -3851.204766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32956 -41.43536 -39.26860 -37.93924 -35.40727 -34.24502 -33.20564 -31.91659 -31.29980 -30.54168 -30.18836 -28.91078 -27.10367 -26.93532 -25.09157 -23.16458 -22.55822 -22.16139 -21.37581 -20.40509 -19.66910 -18.75899 -18.50011 -17.84119 -17.43327 -17.25901 -16.34585 -16.24832 -15.97994 -15.78394 -15.44858 -15.18433 -14.82441 -14.75254 -14.56217 -13.94038 -13.84830 -13.81236 -13.58820 -13.47014 -13.28885 -13.14297 -13.04882 -12.86003 -12.77994 -12.64010 -12.31643 -12.28307 -12.20461 -12.12549 -12.06282 -11.83714 -11.67997 -11.50122 -10.93826 -10.70147 -10.39600 -9.45112 -9.03626 -8.88192 -8.50769 -7.81709 -5.17512 0.22459 0.74348 1.48184 1.50912 1.55521 1.56961 1.77540 2.17100 2.23791 2.50643 3.02917 3.35667 3.42403 3.70347 3.73638 3.86330 3.93876 3.96726 4.04396 4.10512 4.16641 4.25060 4.29467 4.35213 4.45460 4.57433 4.63514 4.64855 4.66051 4.74408 4.81724 4.86935 4.92329 4.99888 5.02770 5.05435 5.08268 5.17613 5.25338 5.29027 5.47857 5.58521 5.60141 5.67729 5.73761 5.81639 5.89696 6.12321 6.27410 6.70710 6.77838 7.05361 7.31259 7.73713 8.44776 9.29116 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002865 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.800986 B = 9769.875591 C =10631.198811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.090 3.910 3 N -0.585 5.585 4 H 0.426 0.574 5 C 0.076 3.924 6 C -0.135 4.135 7 C -0.106 4.106 8 C -0.150 4.150 9 C -0.092 4.092 10 C -0.117 4.117 11 C -0.179 4.179 12 C -0.047 4.047 13 C 0.524 3.476 14 O -0.588 6.588 15 N -0.612 5.612 16 C 0.092 3.908 17 C 0.135 3.865 18 H 0.136 0.864 19 C -0.131 4.131 20 C 0.099 3.901 21 H 0.106 0.894 22 C 0.191 3.809 23 N -0.616 5.616 24 C -0.229 4.229 25 H 0.096 0.904 26 C -0.072 4.072 27 N -0.958 5.958 28 Si 0.977 3.023 29 H -0.275 1.275 30 H -0.304 1.304 31 H -0.275 1.275 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.101 0.899 45 H -0.003 1.003 46 H 0.014 0.986 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.338 9.358 11.730 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.019 4.019 3 N -0.190 5.190 4 H 0.265 0.735 5 C -0.031 4.031 6 C -0.156 4.156 7 C -0.125 4.125 8 C -0.169 4.169 9 C -0.111 4.111 10 C -0.122 4.122 11 C -0.186 4.186 12 C -0.087 4.087 13 C 0.314 3.686 14 O -0.469 6.469 15 N -0.345 5.345 16 C -0.032 4.032 17 C 0.029 3.971 18 H 0.154 0.846 19 C -0.170 4.170 20 C -0.005 4.005 21 H 0.124 0.876 22 C 0.065 3.935 23 N -0.340 5.340 24 C -0.358 4.358 25 H 0.114 0.886 26 C -0.265 4.265 27 N -0.607 5.607 28 Si 0.806 3.194 29 H -0.201 1.201 30 H -0.231 1.231 31 H -0.201 1.201 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.015 0.985 46 H 0.032 0.968 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 16.155 9.959 11.229 22.051 hybrid contribution -1.742 0.323 -0.610 1.873 sum 14.414 10.282 10.618 20.645 Atomic orbital electron populations 1.20502 0.86590 1.03648 1.04202 1.20329 0.94042 0.85699 1.01835 1.41577 1.03591 1.08366 1.65444 0.73477 1.18527 0.85491 0.94105 1.04944 1.20359 0.89241 1.00107 1.05893 1.21172 0.97545 0.94428 0.99371 1.20938 0.98200 0.94578 1.03169 1.20475 0.90932 1.00034 0.99629 1.19327 0.93433 0.93012 1.06420 1.19541 0.91361 0.93436 1.14304 1.19849 1.03915 0.92855 0.92054 1.20904 0.75688 0.79595 0.92391 1.90635 1.53113 1.55060 1.48125 1.49333 1.64777 1.11783 1.08639 1.23195 1.00169 0.88709 0.91176 1.23583 0.84038 0.96395 0.93101 0.84642 1.24073 0.99816 0.93604 0.99520 1.24095 0.95997 0.93729 0.86655 0.87612 1.21457 0.89801 0.89758 0.92464 1.45472 1.03499 1.39270 1.45807 1.19509 0.84213 1.13521 1.18522 0.88597 1.25660 1.01558 0.99714 0.99526 1.70171 1.28163 1.31706 1.30653 0.85168 0.79148 0.77820 0.77293 1.20111 1.23124 1.20073 0.88091 0.89873 0.92015 0.84032 0.82897 0.83888 0.86070 0.87618 0.86516 0.87971 0.92543 0.90437 0.88036 0.98501 0.96826 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.10 9.98 71.23 0.71 -1.39 16 2 C 0.09 2.42 7.08 40.86 0.29 2.71 16 3 N -0.59 -13.66 6.07 -175.92 -1.07 -14.73 16 4 H 0.43 6.93 8.96 -92.71 -0.83 6.10 16 5 C 0.08 1.99 7.28 39.03 0.28 2.27 16 6 C -0.14 -2.80 10.08 22.37 0.23 -2.57 16 7 C -0.11 -1.98 10.01 22.30 0.22 -1.76 16 8 C -0.15 -3.12 9.97 22.03 0.22 -2.90 16 9 C -0.09 -2.39 10.05 22.23 0.22 -2.17 16 10 C -0.12 -3.47 6.35 -20.20 -0.13 -3.60 16 11 C -0.18 -5.40 4.81 -18.62 -0.09 -5.49 16 12 C -0.05 -1.33 5.06 29.10 0.15 -1.18 16 13 C 0.52 19.42 7.89 87.65 0.69 20.12 16 14 O -0.59 -26.77 16.38 -3.01 -0.05 -26.82 16 15 N -0.61 -22.12 2.95 -768.33 -2.26 -24.38 16 16 C 0.09 2.81 6.01 87.16 0.52 3.34 16 17 C 0.14 4.59 5.52 46.93 0.26 4.85 16 18 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 19 C -0.13 -4.17 6.81 33.47 0.23 -3.94 16 20 C 0.10 3.92 5.24 46.94 0.25 4.17 16 21 H 0.11 4.28 8.06 -2.38 -0.02 4.26 16 22 C 0.19 9.63 4.77 87.16 0.42 10.05 16 23 N -0.62 -29.37 3.03 -648.61 -1.96 -31.33 16 24 C -0.23 -12.01 10.37 84.03 0.87 -11.14 16 25 H 0.10 4.61 7.83 -2.91 -0.02 4.59 16 26 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 27 N -0.96 -58.31 10.56 21.65 0.23 -58.08 16 28 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 29 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 30 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 31 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.74 7.66 -2.39 -0.02 1.72 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.11 2.75 7.69 -2.38 -0.02 2.73 16 40 H 0.12 2.71 8.14 -2.39 -0.02 2.70 16 41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.00 -0.19 7.68 -2.39 -0.02 -0.21 16 46 H 0.01 0.78 7.46 -2.39 -0.02 0.76 16 47 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -78.24 383.64 2.87 -75.37 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.16 Total: 25.20 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.81 Total: 7.82 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.07 Total: -128.53 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.24 2.87 -75.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032596537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.477 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds