Wall clock time and date at job start Tue Mar 31 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38829 * 119.67364 * 2 1 4 4 C 1.36626 * 120.53299 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.76491 * 0.02562 * 4 3 2 6 6 C 1.46483 * 134.03289 * 180.02562 * 5 4 3 7 7 C 1.50702 * 126.50421 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47012 * 84.99987 * 7 6 5 9 9 O 1.21286 * 120.00416 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99892 * 180.02562 * 8 7 6 11 11 C 1.47863 * 126.94636 * 359.67926 * 10 8 7 12 12 C 1.55995 * 105.11723 * 181.88145 * 11 10 8 13 13 H 1.09002 * 116.16694 * 159.05367 * 12 11 10 14 14 C 1.57080 * 99.47913 * 33.16456 * 12 11 10 15 15 C 1.49291 * 126.94605 * 180.02562 * 10 8 7 16 16 H 1.09005 * 116.15428 * 16.69320 * 15 10 8 17 17 C 1.56016 * 104.09115 * 247.55617 * 15 10 8 18 18 N 1.49292 * 104.31588 * 289.11047 * 12 11 10 19 19 C 1.36934 * 126.94328 * 246.61531 * 18 12 11 20 20 H 1.08001 * 120.00140 * 0.02562 * 19 18 12 21 21 C 1.38817 * 119.99967 * 179.97438 * 19 18 12 22 22 N 1.31623 * 119.99618 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46844 * 60.00636 * 23 21 19 25 25 H 1.48500 * 109.46773 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47090 * 300.00249 * 23 21 19 27 27 C 1.34246 * 106.99762 * 179.97438 * 6 5 4 28 28 N 1.36829 * 109.92477 * 0.02562 * 27 6 5 29 29 H 0.97007 * 125.05798 * 180.02562 * 28 27 6 30 30 C 1.37685 * 109.87591 * 359.97438 * 28 27 6 31 31 C 1.37757 * 119.66732 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46744 * 270.00160 * 1 2 3 33 33 H 1.08997 * 109.46611 * 29.99861 * 1 2 3 34 34 H 1.09004 * 109.47209 * 149.99939 * 1 2 3 35 35 H 1.08004 * 119.73193 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.11209 * 179.97438 * 4 3 2 37 37 H 1.08995 * 109.47210 * 204.99832 * 7 6 5 38 38 H 1.09001 * 109.46918 * 324.99849 * 7 6 5 39 39 H 1.09003 * 110.31649 * 300.91059 * 11 10 8 40 40 H 1.09004 * 110.31627 * 63.09393 * 11 10 8 41 41 H 1.08999 * 112.37495 * 191.51554 * 14 12 11 42 42 H 1.09000 * 112.37065 * 64.06997 * 14 12 11 43 43 H 1.08996 * 110.32159 * 47.67155 * 17 15 10 44 44 H 1.09005 * 110.31840 * 169.86177 * 17 15 10 45 45 H 0.97001 * 119.99515 * 179.97438 * 22 21 19 46 46 H 1.07995 * 125.03478 * 179.97438 * 27 6 5 47 47 H 1.08001 * 120.10626 * 0.27886 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2062 0.0000 4 6 3.5604 1.2267 0.0005 5 6 4.2717 0.0252 0.0005 6 6 5.6966 -0.3145 0.0015 7 6 6.8495 0.6559 0.0033 8 6 7.1529 1.0729 1.4194 9 8 6.4977 0.6257 2.3368 10 7 8.1522 1.9428 1.6663 11 6 9.0468 2.5742 0.6726 12 6 10.0363 3.4424 1.5096 13 1 10.9757 3.7046 1.0228 14 6 10.1394 2.5484 2.7970 15 6 8.5845 2.4581 2.9991 16 1 8.2385 1.8962 3.8667 17 6 8.2070 3.9714 2.9618 18 7 9.2008 4.5727 2.0127 19 6 9.3133 5.8943 1.6725 20 1 10.0701 6.2083 0.9689 21 6 8.4540 6.8304 2.2313 22 7 7.5314 6.4477 3.0885 23 14 8.6070 8.6333 1.7667 24 1 8.4022 8.7865 0.3038 25 1 7.5809 9.4211 2.4958 26 1 9.9597 9.1253 2.1314 27 6 5.7806 -1.6543 0.0015 28 7 4.5259 -2.2002 0.0001 29 1 4.3318 -3.1507 0.0002 30 6 3.5801 -1.1997 -0.0003 31 6 2.1888 -1.1970 0.0005 32 1 -0.3633 0.0000 1.0277 33 1 -0.3632 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5139 35 1 1.6446 2.1359 0.0004 36 1 4.0881 2.1690 0.0001 37 1 7.7276 0.1778 -0.4306 38 1 6.5859 1.5345 -0.5856 39 1 9.5893 1.8118 0.1134 40 1 8.4730 3.2056 -0.0059 41 1 10.6356 3.0623 3.6203 42 1 10.5879 1.5763 2.5923 43 1 7.1871 4.0983 2.5990 44 1 8.3147 4.4129 3.9526 45 1 6.9311 7.1019 3.4792 46 1 6.7020 -2.2177 0.0017 47 1 1.6452 -2.1302 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032679777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:26 Heat of formation + Delta-G solvation = 79.451925 kcal Electronic energy + Delta-G solvation = -29189.602257 eV Core-core repulsion = 25339.279780 eV Total energy + Delta-G solvation = -3850.322477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24334 -39.85674 -37.74313 -37.21822 -33.50029 -33.04966 -31.75277 -31.19587 -29.75975 -29.06138 -28.47501 -27.28085 -25.93129 -25.12076 -23.38691 -22.71129 -20.96814 -20.86681 -19.79156 -19.25735 -18.28089 -17.68059 -17.09073 -16.25971 -16.20105 -15.52671 -15.15758 -14.99237 -14.55140 -14.26496 -14.16873 -13.85092 -13.71554 -13.41172 -13.32636 -13.20818 -12.74981 -12.34175 -12.16056 -12.10261 -11.92067 -11.78879 -11.58693 -11.27869 -11.23418 -11.17841 -10.97980 -10.82103 -10.75348 -10.69182 -10.54015 -10.23991 -10.06151 -9.59099 -9.55815 -9.19371 -8.68561 -8.04593 -7.90107 -7.52961 -6.90375 -5.73633 -3.07926 1.20343 1.71792 2.66835 3.13882 3.21122 3.39349 3.43556 3.45743 3.60267 4.00092 4.44034 4.74589 4.82766 4.91979 4.96142 5.03984 5.23109 5.25095 5.27282 5.29938 5.36506 5.45129 5.53400 5.59524 5.60250 5.67012 5.69968 5.72530 5.82546 5.85252 5.92827 5.95758 6.03336 6.21061 6.25670 6.33868 6.45635 6.55167 6.60683 6.63252 6.68836 6.75214 6.80862 6.87706 7.24771 7.44832 7.52423 7.55838 7.73776 8.08802 8.22810 8.76603 9.10066 9.73491 10.42871 11.38611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.003076 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.616248 B = 9099.345591 C =10629.414591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.058 4.058 5 C -0.093 4.093 6 C -0.141 4.141 7 C -0.061 4.061 8 C 0.527 3.473 9 O -0.546 6.546 10 N -0.610 5.610 11 C 0.083 3.917 12 C 0.142 3.858 13 H 0.105 0.895 14 C -0.151 4.151 15 C 0.097 3.903 16 H 0.109 0.891 17 C 0.177 3.823 18 N -0.599 5.599 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.054 3.946 28 N -0.597 5.597 29 H 0.413 0.587 30 C 0.099 3.901 31 C -0.137 4.137 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.167 0.833 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -17.266 -8.319 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.071 4.071 3 C -0.167 4.167 4 C -0.077 4.077 5 C -0.098 4.098 6 C -0.148 4.148 7 C -0.102 4.102 8 C 0.315 3.685 9 O -0.424 6.424 10 N -0.344 5.344 11 C -0.042 4.042 12 C 0.033 3.967 13 H 0.123 0.877 14 C -0.191 4.191 15 C -0.005 4.005 16 H 0.127 0.873 17 C 0.053 3.947 18 N -0.324 5.324 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.071 4.071 28 N -0.199 5.199 29 H 0.249 0.751 30 C -0.007 4.007 31 C -0.158 4.158 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.184 0.816 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.501 -17.424 -7.795 19.865 hybrid contribution -0.030 0.574 -0.212 0.613 sum -5.531 -16.850 -8.007 19.458 Atomic orbital electron populations 1.20745 0.91261 1.02429 1.02178 1.19504 0.95541 0.92315 0.99706 1.20502 0.93905 0.97298 1.04973 1.20322 0.93665 0.96679 0.97001 1.18983 0.92439 0.92471 1.05870 1.19621 0.91940 0.92557 1.10688 1.19904 0.96281 0.98930 0.95040 1.20149 0.79094 0.78232 0.90986 1.90672 1.49297 1.55860 1.46573 1.49244 1.32406 1.43325 1.09444 1.23277 0.93183 0.95640 0.92128 1.23106 0.93395 0.87684 0.92469 0.87703 1.24143 0.95369 0.99277 1.00303 1.24295 0.93680 0.96948 0.85623 0.87271 1.22262 0.92964 0.84915 0.94574 1.45725 1.34927 1.01896 1.49866 1.19006 1.14148 0.81208 1.21584 0.90289 1.24806 0.98079 0.98096 0.99295 1.69902 1.21358 1.32789 1.32541 0.86210 0.77121 0.84709 0.77744 1.21189 1.21649 1.21182 1.21452 0.87549 0.93516 1.04602 1.41594 1.04583 1.07706 1.66067 0.75086 1.18163 0.90653 0.87969 1.03951 1.19751 0.89793 0.97911 1.08329 0.91310 0.91518 0.91944 0.86139 0.86063 0.88796 0.88483 0.92922 0.91172 0.89946 0.91766 0.93296 0.92590 0.93563 0.81600 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.99 36.01 0.36 -0.61 16 2 C -0.07 -0.85 5.88 -104.58 -0.61 -1.47 16 3 C -0.15 -2.02 9.61 -39.95 -0.38 -2.40 16 4 C -0.06 -0.91 10.05 -39.65 -0.40 -1.31 16 5 C -0.09 -1.47 6.35 -105.14 -0.67 -2.14 16 6 C -0.14 -2.07 4.81 -102.71 -0.49 -2.56 16 7 C -0.06 -0.87 5.52 -29.04 -0.16 -1.03 16 8 C 0.53 9.73 7.89 -10.99 -0.09 9.65 16 9 O -0.55 -12.07 16.38 5.55 0.09 -11.98 16 10 N -0.61 -11.23 2.94 -156.81 -0.46 -11.69 16 11 C 0.08 1.38 6.01 -1.69 -0.01 1.37 16 12 C 0.14 2.60 5.52 -62.57 -0.35 2.26 16 13 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 14 C -0.15 -2.56 6.82 -22.32 -0.15 -2.71 16 15 C 0.10 1.91 5.18 -62.57 -0.32 1.58 16 16 H 0.11 2.13 8.06 -51.93 -0.42 1.71 16 17 C 0.18 4.29 4.88 -0.47 0.00 4.28 16 18 N -0.60 -14.36 3.07 -154.61 -0.47 -14.83 16 19 C -0.23 -6.13 10.38 -15.06 -0.16 -6.29 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -26.85 10.57 55.49 0.59 -26.26 16 23 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.05 0.65 11.73 -16.73 -0.20 0.45 16 28 N -0.60 -6.65 6.07 -10.65 -0.06 -6.71 16 29 H 0.41 3.09 8.96 -40.82 -0.37 2.72 16 30 C 0.10 1.37 7.28 -83.99 -0.61 0.76 16 31 C -0.14 -1.68 9.71 -39.43 -0.38 -2.06 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.12 16 34 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 36 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.05 1.36 7.73 -51.93 -0.40 0.96 16 44 H 0.06 1.49 7.48 -51.93 -0.39 1.10 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -34.39 384.89 -11.30 -45.69 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.03 Total: 5.80 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.72 Total: -2.50 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.41 Total: -59.50 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.39 -11.30 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032679777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.141 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds