Wall clock time and date at job start Tue Mar 31 2020 22:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38829 * 119.67364 * 2 1 4 4 C 1.36626 * 120.53299 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.76491 * 0.02562 * 4 3 2 6 6 C 1.46483 * 134.03289 * 180.02562 * 5 4 3 7 7 C 1.50702 * 126.50421 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47012 * 84.99987 * 7 6 5 9 9 O 1.21286 * 120.00416 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99892 * 180.02562 * 8 7 6 11 11 C 1.47863 * 126.94636 * 359.67926 * 10 8 7 12 12 C 1.55995 * 105.11723 * 181.88145 * 11 10 8 13 13 H 1.09002 * 116.16694 * 159.05367 * 12 11 10 14 14 C 1.57080 * 99.47913 * 33.16456 * 12 11 10 15 15 C 1.49291 * 126.94605 * 180.02562 * 10 8 7 16 16 H 1.09005 * 116.15428 * 16.69320 * 15 10 8 17 17 C 1.56016 * 104.09115 * 247.55617 * 15 10 8 18 18 N 1.49292 * 104.31588 * 289.11047 * 12 11 10 19 19 C 1.36934 * 126.94328 * 246.61531 * 18 12 11 20 20 H 1.08001 * 120.00140 * 0.02562 * 19 18 12 21 21 C 1.38817 * 119.99967 * 179.97438 * 19 18 12 22 22 N 1.31623 * 119.99618 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46844 * 60.00636 * 23 21 19 25 25 H 1.48500 * 109.46773 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47090 * 300.00249 * 23 21 19 27 27 C 1.34246 * 106.99762 * 179.97438 * 6 5 4 28 28 N 1.36829 * 109.92477 * 0.02562 * 27 6 5 29 29 H 0.97007 * 125.05798 * 180.02562 * 28 27 6 30 30 C 1.37685 * 109.87591 * 359.97438 * 28 27 6 31 31 C 1.37757 * 119.66732 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46744 * 270.00160 * 1 2 3 33 33 H 1.08997 * 109.46611 * 29.99861 * 1 2 3 34 34 H 1.09004 * 109.47209 * 149.99939 * 1 2 3 35 35 H 1.08004 * 119.73193 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.11209 * 179.97438 * 4 3 2 37 37 H 1.08995 * 109.47210 * 204.99832 * 7 6 5 38 38 H 1.09001 * 109.46918 * 324.99849 * 7 6 5 39 39 H 1.09003 * 110.31649 * 300.91059 * 11 10 8 40 40 H 1.09004 * 110.31627 * 63.09393 * 11 10 8 41 41 H 1.08999 * 112.37495 * 191.51554 * 14 12 11 42 42 H 1.09000 * 112.37065 * 64.06997 * 14 12 11 43 43 H 1.08996 * 110.32159 * 47.67155 * 17 15 10 44 44 H 1.09005 * 110.31840 * 169.86177 * 17 15 10 45 45 H 0.97001 * 119.99515 * 179.97438 * 22 21 19 46 46 H 1.07995 * 125.03478 * 179.97438 * 27 6 5 47 47 H 1.08001 * 120.10626 * 0.27886 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2062 0.0000 4 6 3.5604 1.2267 0.0005 5 6 4.2717 0.0252 0.0005 6 6 5.6966 -0.3145 0.0015 7 6 6.8495 0.6559 0.0033 8 6 7.1529 1.0729 1.4194 9 8 6.4977 0.6257 2.3368 10 7 8.1522 1.9428 1.6663 11 6 9.0468 2.5742 0.6726 12 6 10.0363 3.4424 1.5096 13 1 10.9757 3.7046 1.0228 14 6 10.1394 2.5484 2.7970 15 6 8.5845 2.4581 2.9991 16 1 8.2385 1.8962 3.8667 17 6 8.2070 3.9714 2.9618 18 7 9.2008 4.5727 2.0127 19 6 9.3133 5.8943 1.6725 20 1 10.0701 6.2083 0.9689 21 6 8.4540 6.8304 2.2313 22 7 7.5314 6.4477 3.0885 23 14 8.6070 8.6333 1.7667 24 1 8.4022 8.7865 0.3038 25 1 7.5809 9.4211 2.4958 26 1 9.9597 9.1253 2.1314 27 6 5.7806 -1.6543 0.0015 28 7 4.5259 -2.2002 0.0001 29 1 4.3318 -3.1507 0.0002 30 6 3.5801 -1.1997 -0.0003 31 6 2.1888 -1.1970 0.0005 32 1 -0.3633 0.0000 1.0277 33 1 -0.3632 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5139 35 1 1.6446 2.1359 0.0004 36 1 4.0881 2.1690 0.0001 37 1 7.7276 0.1778 -0.4306 38 1 6.5859 1.5345 -0.5856 39 1 9.5893 1.8118 0.1134 40 1 8.4730 3.2056 -0.0059 41 1 10.6356 3.0623 3.6203 42 1 10.5879 1.5763 2.5923 43 1 7.1871 4.0983 2.5990 44 1 8.3147 4.4129 3.9526 45 1 6.9311 7.1019 3.4792 46 1 6.7020 -2.2177 0.0017 47 1 1.6452 -2.1302 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032679777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:25 Heat of formation + Delta-G solvation = 58.984955 kcal Electronic energy + Delta-G solvation = -29190.489772 eV Core-core repulsion = 25339.279780 eV Total energy + Delta-G solvation = -3851.209992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23290 -41.37421 -39.22646 -38.22616 -35.35545 -34.15676 -33.24392 -32.39220 -30.91925 -30.54406 -30.16609 -28.38885 -26.91366 -26.83213 -25.09215 -23.72547 -22.48521 -21.83515 -21.36154 -20.51318 -19.74690 -18.83639 -18.58390 -17.82967 -17.36693 -17.10952 -16.45005 -16.20265 -16.03634 -15.69634 -15.29880 -15.15337 -14.86792 -14.72418 -14.68161 -14.14541 -13.93015 -13.72674 -13.53569 -13.40016 -13.24792 -13.03723 -12.93403 -12.82891 -12.79593 -12.65197 -12.30549 -12.27465 -12.13444 -12.12154 -12.04149 -11.86108 -11.71319 -11.46932 -10.93297 -10.71304 -10.37020 -9.45037 -9.05117 -8.89148 -8.51161 -7.82272 -5.17687 0.19571 0.67412 1.46895 1.50054 1.56070 1.61461 1.79295 2.22618 2.30371 2.50086 2.93467 3.34449 3.39207 3.72220 3.78382 3.90262 3.94650 3.96999 4.04095 4.08205 4.14018 4.25851 4.31474 4.41070 4.52509 4.58971 4.61383 4.68292 4.75151 4.84412 4.88129 4.89430 4.91304 4.97933 4.99331 5.05999 5.16778 5.17844 5.26280 5.30176 5.47494 5.57088 5.60555 5.65945 5.68614 5.79247 5.83846 6.08916 6.24867 6.76928 6.79963 7.01319 7.32404 7.71816 8.44043 9.29009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.003076 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.616248 B = 9099.345591 C =10629.414591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.079 4.079 3 C -0.156 4.156 4 C -0.094 4.094 5 C -0.126 4.126 6 C -0.186 4.186 7 C -0.047 4.047 8 C 0.521 3.479 9 O -0.590 6.590 10 N -0.613 5.613 11 C 0.091 3.909 12 C 0.136 3.864 13 H 0.137 0.863 14 C -0.127 4.127 15 C 0.098 3.902 16 H 0.105 0.895 17 C 0.190 3.810 18 N -0.619 5.619 19 C -0.228 4.228 20 H 0.096 0.904 21 C -0.074 4.074 22 N -0.959 5.959 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.304 1.304 26 H -0.273 1.273 27 C 0.078 3.922 28 N -0.582 5.582 29 H 0.432 0.568 30 C 0.084 3.916 31 C -0.134 4.134 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.105 0.895 43 H -0.005 1.005 44 H 0.016 0.984 45 H 0.242 0.758 46 H 0.207 0.793 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -20.328 -10.450 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.175 4.175 4 C -0.113 4.113 5 C -0.131 4.131 6 C -0.193 4.193 7 C -0.087 4.087 8 C 0.312 3.688 9 O -0.471 6.471 10 N -0.346 5.346 11 C -0.034 4.034 12 C 0.029 3.971 13 H 0.155 0.845 14 C -0.166 4.166 15 C -0.006 4.006 16 H 0.123 0.877 17 C 0.064 3.936 18 N -0.344 5.344 19 C -0.357 4.357 20 H 0.114 0.886 21 C -0.267 4.267 22 N -0.608 5.608 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.231 1.231 26 H -0.199 1.199 27 C -0.049 4.049 28 N -0.186 5.186 29 H 0.272 0.728 30 C -0.024 4.024 31 C -0.154 4.154 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.051 0.949 46 H 0.224 0.776 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.794 -20.533 -9.980 23.143 hybrid contribution -0.562 1.463 0.445 1.629 sum -4.356 -19.070 -9.534 21.761 Atomic orbital electron populations 1.20785 0.88681 1.03808 1.02942 1.19901 0.97431 0.91684 0.99049 1.20744 0.93418 0.98727 1.04606 1.20350 0.94754 0.96329 0.99877 1.19361 0.93878 0.93219 1.06634 1.19817 0.91477 0.94014 1.14025 1.19849 0.97974 0.99104 0.91747 1.21000 0.77927 0.77456 0.92416 1.90639 1.50480 1.57595 1.48351 1.49347 1.32952 1.43207 1.09114 1.23226 0.92351 0.96550 0.91227 1.23569 0.94113 0.85854 0.93523 0.84517 1.24034 0.92543 1.00848 0.99170 1.24088 0.96319 0.93347 0.86799 0.87678 1.21826 0.90815 0.88440 0.92498 1.45991 1.35716 1.02674 1.50057 1.19530 1.13298 0.82553 1.20355 0.88607 1.25668 0.98512 1.02334 1.00137 1.70165 1.22726 1.33342 1.34600 0.85166 0.76958 0.79839 0.77469 1.20244 1.23124 1.19899 1.22039 0.88905 0.92870 1.01086 1.41618 1.03924 1.08369 1.64738 0.72782 1.18400 0.91569 0.88020 1.04403 1.20159 0.89476 0.99152 1.06617 0.90705 0.90872 0.89899 0.85380 0.88349 0.84680 0.89147 0.87383 0.93180 0.90473 0.87629 0.98705 0.96534 0.94877 0.77584 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.99 71.24 0.71 -0.99 16 2 C -0.08 -1.91 5.88 -19.84 -0.12 -2.02 16 3 C -0.16 -4.51 9.61 22.03 0.21 -4.30 16 4 C -0.09 -3.21 10.05 22.23 0.22 -2.99 16 5 C -0.13 -4.11 6.35 -20.20 -0.13 -4.23 16 6 C -0.19 -5.33 4.81 -18.63 -0.09 -5.42 16 7 C -0.05 -1.29 5.52 29.10 0.16 -1.13 16 8 C 0.52 19.23 7.89 87.66 0.69 19.92 16 9 O -0.59 -26.77 16.38 -3.05 -0.05 -26.82 16 10 N -0.61 -22.16 2.94 -768.43 -2.26 -24.42 16 11 C 0.09 2.78 6.01 87.16 0.52 3.30 16 12 C 0.14 4.62 5.52 46.92 0.26 4.88 16 13 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 14 C -0.13 -3.97 6.82 33.45 0.23 -3.74 16 15 C 0.10 3.90 5.18 46.92 0.24 4.15 16 16 H 0.11 4.24 8.06 -2.38 -0.02 4.22 16 17 C 0.19 9.76 4.88 86.74 0.42 10.18 16 18 N -0.62 -30.05 3.07 -643.08 -1.97 -32.02 16 19 C -0.23 -12.22 10.38 84.04 0.87 -11.35 16 20 H 0.10 4.69 7.83 -2.91 -0.02 4.67 16 21 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 22 N -0.96 -59.72 10.57 21.65 0.23 -59.49 16 23 Si 0.98 45.90 29.55 68.60 2.03 47.92 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C 0.08 1.64 11.73 83.00 0.97 2.61 16 28 N -0.58 -11.48 6.07 -187.62 -1.14 -12.62 16 29 H 0.43 4.97 8.96 -92.70 -0.83 4.14 16 30 C 0.08 2.22 7.28 39.03 0.28 2.51 16 31 C -0.13 -3.08 9.71 22.37 0.22 -2.86 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.10 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.11 2.53 8.14 -2.39 -0.02 2.52 16 43 H -0.01 -0.33 7.73 -2.39 -0.02 -0.34 16 44 H 0.02 0.96 7.48 -2.38 -0.02 0.94 16 45 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 47 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -82.73 384.89 3.14 -79.59 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.15 Total: 23.12 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.16 Total: 4.74 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -5.14 Total: -128.55 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -82.73 3.14 -79.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032679777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.571 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds