Wall clock time and date at job start Tue Mar 31 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.41595 * 126.14148 * 2 1 4 4 C 1.40103 * 133.36980 * 359.96843 * 3 2 1 5 5 C 1.36442 * 119.82562 * 180.29652 * 4 3 2 6 6 C 1.50702 * 119.69425 * 179.97438 * 5 4 3 7 7 C 1.38942 * 120.61708 * 0.02562 * 5 4 3 8 8 C 1.37675 * 120.64661 * 359.97438 * 7 5 4 9 9 C 1.39222 * 119.81114 * 0.02562 * 8 7 5 10 10 N 1.37484 * 133.18445 * 180.02562 * 9 8 7 11 11 H 0.96995 * 125.60124 * 359.97438 * 10 9 8 12 12 C 1.35872 * 126.13832 * 179.83577 * 2 1 3 13 13 C 1.47058 * 125.42791 * 0.02562 * 12 2 1 14 14 O 1.21653 * 119.99985 * 359.71734 * 13 12 2 15 15 N 1.34777 * 119.99966 * 179.44451 * 13 12 2 16 16 C 1.47867 * 126.94233 * 0.29233 * 15 13 12 17 17 C 1.56021 * 105.10062 * 181.98075 * 16 15 13 18 18 H 1.09001 * 116.24552 * 159.68319 * 17 16 15 19 19 C 1.57081 * 99.60651 * 32.81197 * 17 16 15 20 20 C 1.49285 * 126.94419 * 179.97438 * 15 13 12 21 21 H 1.09004 * 116.15574 * 15.85846 * 20 15 13 22 22 C 1.55484 * 104.35610 * 246.77664 * 20 15 13 23 23 N 1.47867 * 105.16946 * 288.90475 * 22 20 15 24 24 C 1.36936 * 126.94440 * 181.91824 * 23 22 20 25 25 H 1.07997 * 120.00102 * 180.02562 * 24 23 22 26 26 C 1.38819 * 119.99805 * 0.02562 * 24 23 22 27 27 N 1.31615 * 120.00041 * 0.02562 * 26 24 23 28 28 Si 1.86798 * 119.99808 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.46877 * 90.00007 * 28 26 24 30 30 H 1.48498 * 109.47332 * 209.99833 * 28 26 24 31 31 H 1.48493 * 109.47411 * 330.00473 * 28 26 24 32 32 H 1.09001 * 109.47350 * 270.19297 * 1 2 3 33 33 H 1.09001 * 109.47028 * 30.18620 * 1 2 3 34 34 H 1.08998 * 109.47209 * 150.18796 * 1 2 3 35 35 H 1.07997 * 120.08832 * 0.31892 * 4 3 2 36 36 H 1.08999 * 109.46691 * 90.00225 * 6 5 4 37 37 H 1.08998 * 109.47248 * 210.00582 * 6 5 4 38 38 H 1.09002 * 109.46972 * 330.00269 * 6 5 4 39 39 H 1.07991 * 119.67898 * 180.02562 * 7 5 4 40 40 H 1.08001 * 120.09357 * 180.02562 * 8 7 5 41 41 H 1.08996 * 110.31960 * 300.88756 * 16 15 13 42 42 H 1.09001 * 110.31258 * 63.08305 * 16 15 13 43 43 H 1.09001 * 112.36868 * 64.26942 * 19 17 16 44 44 H 1.08998 * 112.37068 * 191.71143 * 19 17 16 45 45 H 1.08994 * 110.35190 * 169.93729 * 22 20 15 46 46 H 1.09003 * 110.29755 * 47.83995 * 22 20 15 47 47 H 0.97005 * 120.00097 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3420 1.1435 0.0000 4 6 2.0870 2.5211 -0.0006 5 6 3.1273 3.4038 -0.0065 6 6 2.8496 4.8850 -0.0077 7 6 4.4405 2.9499 -0.0126 8 6 4.7168 1.6012 -0.0122 9 6 3.6723 0.6807 -0.0061 10 7 3.6293 -0.6935 -0.0038 11 1 4.3998 -1.2826 -0.0065 12 6 2.3082 -1.0973 0.0031 13 6 1.8432 -2.4924 0.0066 14 8 0.6514 -2.7363 0.0120 15 7 2.7374 -3.5008 -0.0018 16 6 4.2112 -3.3816 -0.0087 17 6 4.7374 -4.8492 -0.0691 18 1 5.7604 -4.9803 -0.4218 19 6 3.5939 -5.5027 -0.9251 20 6 2.4400 -4.9637 0.0007 21 1 1.4196 -5.2471 -0.2573 22 6 2.9579 -5.4601 1.3802 23 7 4.4323 -5.4007 1.2841 24 6 5.3353 -5.7757 2.2428 25 1 6.3944 -5.6836 2.0526 26 6 4.8894 -6.2743 3.4592 27 7 3.5987 -6.3870 3.6908 28 14 6.1212 -6.7866 4.7667 29 1 6.4297 -5.6246 5.6384 30 1 5.5453 -7.8820 5.5873 31 1 7.3680 -7.2601 4.1137 32 1 -0.3634 0.0035 1.0276 33 1 -0.3633 0.8883 -0.5167 34 1 -0.3633 -0.8916 -0.5109 35 1 1.0696 2.8834 0.0041 36 1 2.7871 5.2437 1.0197 37 1 3.6550 5.4053 -0.5259 38 1 1.9056 5.0773 -0.5177 39 1 5.2524 3.6620 -0.0168 40 1 5.7409 1.2582 -0.0165 41 1 4.5418 -2.8247 -0.8854 42 1 4.5556 -2.8934 0.9030 43 1 3.5455 -5.0934 -1.9342 44 1 3.6480 -6.5913 -0.9276 45 1 2.6314 -6.4840 1.5616 46 1 2.6038 -4.8040 2.1754 47 1 3.2870 -6.7358 4.5407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032709790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:29 Heat of formation + Delta-G solvation = 82.132284 kcal Electronic energy + Delta-G solvation = -29637.849006 eV Core-core repulsion = 25787.642758 eV Total energy + Delta-G solvation = -3850.206248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67474 -40.03475 -38.07809 -37.09719 -33.93272 -33.11095 -32.02739 -31.23981 -29.88024 -29.22751 -28.75196 -26.99729 -26.25909 -25.31322 -24.24510 -23.08173 -21.35996 -21.00514 -19.99706 -19.27409 -18.95250 -17.66141 -17.26072 -16.54602 -15.90089 -15.49153 -15.29239 -15.01241 -14.53263 -14.33216 -14.12724 -13.90515 -13.74750 -13.59773 -13.44611 -13.12808 -12.66369 -12.61099 -12.27456 -12.21612 -12.09727 -12.03980 -11.82433 -11.54672 -11.43713 -11.18664 -11.12571 -10.97111 -10.92704 -10.85310 -10.72046 -10.38149 -10.16567 -9.75107 -9.68235 -9.61348 -8.80267 -8.28925 -8.07694 -7.59427 -7.04470 -5.85830 -3.21504 0.80918 1.55619 2.19090 2.96228 3.24146 3.31680 3.36233 3.39186 3.55855 3.81374 4.32954 4.56377 4.64961 4.82143 4.91926 4.95910 5.00166 5.12396 5.19146 5.22932 5.31505 5.42452 5.43483 5.48983 5.51150 5.57346 5.62085 5.68993 5.75671 5.85737 5.86323 5.90985 5.96200 6.09063 6.10360 6.23224 6.26990 6.30349 6.44021 6.45504 6.50547 6.59350 6.68595 6.75714 7.09103 7.31998 7.37471 7.44762 7.62706 7.87043 8.00046 8.38835 9.00235 9.61287 10.28816 11.26024 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003163 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.536241 B = 8848.911658 C = 9733.350964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.087 4.087 3 C -0.111 4.111 4 C -0.061 4.061 5 C -0.123 4.123 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.127 4.127 9 C 0.106 3.894 10 N -0.577 5.577 11 H 0.421 0.579 12 C 0.029 3.971 13 C 0.594 3.406 14 O -0.532 6.532 15 N -0.604 5.604 16 C 0.069 3.931 17 C 0.144 3.856 18 H 0.110 0.890 19 C -0.150 4.150 20 C 0.102 3.898 21 H 0.118 0.882 22 C 0.171 3.829 23 N -0.595 5.595 24 C -0.238 4.238 25 H 0.081 0.919 26 C -0.003 4.003 27 N -0.917 5.917 28 Si 0.914 3.086 29 H -0.288 1.288 30 H -0.290 1.290 31 H -0.280 1.280 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 16.054 -10.760 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.115 4.115 4 C -0.080 4.080 5 C -0.124 4.124 6 C -0.163 4.163 7 C -0.111 4.111 8 C -0.148 4.148 9 C -0.005 4.005 10 N -0.186 5.186 11 H 0.265 0.735 12 C -0.081 4.081 13 C 0.383 3.617 14 O -0.410 6.410 15 N -0.337 5.337 16 C -0.057 4.057 17 C 0.035 3.965 18 H 0.127 0.873 19 C -0.189 4.189 20 C 0.000 4.000 21 H 0.136 0.864 22 C 0.046 3.954 23 N -0.319 5.319 24 C -0.365 4.365 25 H 0.099 0.901 26 C -0.200 4.200 27 N -0.563 5.563 28 Si 0.744 3.256 29 H -0.216 1.216 30 H -0.216 1.216 31 H -0.206 1.206 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.508 15.679 -10.461 18.855 hybrid contribution 1.225 -0.489 0.957 1.629 sum 0.717 15.190 -9.504 17.933 Atomic orbital electron populations 1.20348 0.88776 1.02924 1.02406 1.19465 0.95959 0.89533 1.04659 1.18072 0.91914 0.93418 1.08136 1.20190 0.98760 0.90375 0.98672 1.19322 0.92978 0.95745 1.04348 1.20699 1.01995 0.91655 1.01973 1.20695 0.96109 0.94189 1.00075 1.20049 0.96798 0.91903 1.06050 1.18371 0.95626 0.83221 1.03289 1.42629 1.07409 1.05320 1.63215 0.73525 1.20064 0.83103 0.93942 1.10992 1.16783 0.85308 0.82186 0.77403 1.90772 1.14849 1.83417 1.51951 1.49136 1.06563 1.06913 1.71039 1.23526 0.80302 1.02468 0.99426 1.23143 0.96788 0.88661 0.87901 0.87272 1.24219 0.96557 1.01253 0.96893 1.24378 0.98923 0.77421 0.99324 0.86396 1.21871 0.83179 1.00050 0.90272 1.45252 1.01973 1.73849 1.10856 1.19030 0.88029 1.36602 0.92871 0.90103 1.24840 0.96205 1.01071 0.97931 1.69910 1.11713 1.50485 1.24155 0.86106 0.79949 0.77978 0.81592 1.21559 1.21573 1.20578 0.91407 0.92223 0.89649 0.86056 0.91627 0.91892 0.91860 0.85792 0.86032 0.92923 0.90953 0.91485 0.89417 0.92256 0.93339 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.76 36.00 0.35 -0.87 16 2 C -0.09 -1.38 6.18 -104.20 -0.64 -2.03 16 3 C -0.11 -1.61 6.11 -106.93 -0.65 -2.26 16 4 C -0.06 -0.74 9.68 -39.53 -0.38 -1.12 16 5 C -0.12 -1.30 5.84 -105.01 -0.61 -1.92 16 6 C -0.11 -0.81 9.99 36.01 0.36 -0.45 16 7 C -0.09 -0.95 9.66 -39.53 -0.38 -1.33 16 8 C -0.13 -1.50 10.08 -39.42 -0.40 -1.89 16 9 C 0.11 1.50 7.25 -83.98 -0.61 0.89 16 10 N -0.58 -8.56 5.77 -7.36 -0.04 -8.60 16 11 H 0.42 5.65 4.94 -40.82 -0.20 5.45 16 12 C 0.03 0.49 6.84 -82.29 -0.56 -0.08 16 13 C 0.59 11.25 7.88 -12.68 -0.10 11.15 16 14 O -0.53 -11.09 14.91 5.23 0.08 -11.01 16 15 N -0.60 -10.99 2.95 -158.26 -0.47 -11.45 16 16 C 0.07 1.12 4.50 -1.68 -0.01 1.11 16 17 C 0.14 2.53 5.53 -62.56 -0.35 2.19 16 18 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 19 C -0.15 -2.40 6.83 -22.09 -0.15 -2.55 16 20 C 0.10 1.90 5.23 -62.64 -0.33 1.57 16 21 H 0.12 2.13 8.05 -51.93 -0.42 1.71 16 22 C 0.17 3.99 4.75 -1.97 -0.01 3.98 16 23 N -0.60 -13.78 3.02 -156.69 -0.47 -14.25 16 24 C -0.24 -6.14 10.38 -15.06 -0.16 -6.29 16 25 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 26 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 27 N -0.92 -26.24 10.56 55.49 0.59 -25.66 16 28 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 31 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.32 6.32 -51.93 -0.33 0.99 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.05 0.70 7.11 -51.93 -0.37 0.33 16 42 H 0.07 1.29 7.39 -51.93 -0.38 0.91 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 46 H 0.05 1.32 7.67 -51.93 -0.40 0.92 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -31.29 374.28 -11.10 -42.39 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.68 Total: 6.70 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -4.73 Total: -0.09 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.40 Total: -59.97 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.29 -11.10 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032709790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.526 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds