Wall clock time and date at job start Tue Mar 31 2020 22:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.41595 * 126.14148 * 2 1 4 4 C 1.40103 * 133.36980 * 359.96843 * 3 2 1 5 5 C 1.36442 * 119.82562 * 180.29652 * 4 3 2 6 6 C 1.50702 * 119.69425 * 179.97438 * 5 4 3 7 7 C 1.38942 * 120.61708 * 0.02562 * 5 4 3 8 8 C 1.37675 * 120.64661 * 359.97438 * 7 5 4 9 9 C 1.39222 * 119.81114 * 0.02562 * 8 7 5 10 10 N 1.37484 * 133.18445 * 180.02562 * 9 8 7 11 11 H 0.96995 * 125.60124 * 359.97438 * 10 9 8 12 12 C 1.35872 * 126.13832 * 179.83577 * 2 1 3 13 13 C 1.47058 * 125.42791 * 0.02562 * 12 2 1 14 14 O 1.21653 * 119.99985 * 359.71734 * 13 12 2 15 15 N 1.34777 * 119.99966 * 179.44451 * 13 12 2 16 16 C 1.47867 * 126.94233 * 0.29233 * 15 13 12 17 17 C 1.56021 * 105.10062 * 181.98075 * 16 15 13 18 18 H 1.09001 * 116.24552 * 159.68319 * 17 16 15 19 19 C 1.57081 * 99.60651 * 32.81197 * 17 16 15 20 20 C 1.49285 * 126.94419 * 179.97438 * 15 13 12 21 21 H 1.09004 * 116.15574 * 15.85846 * 20 15 13 22 22 C 1.55484 * 104.35610 * 246.77664 * 20 15 13 23 23 N 1.47867 * 105.16946 * 288.90475 * 22 20 15 24 24 C 1.36936 * 126.94440 * 181.91824 * 23 22 20 25 25 H 1.07997 * 120.00102 * 180.02562 * 24 23 22 26 26 C 1.38819 * 119.99805 * 0.02562 * 24 23 22 27 27 N 1.31615 * 120.00041 * 0.02562 * 26 24 23 28 28 Si 1.86798 * 119.99808 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.46877 * 90.00007 * 28 26 24 30 30 H 1.48498 * 109.47332 * 209.99833 * 28 26 24 31 31 H 1.48493 * 109.47411 * 330.00473 * 28 26 24 32 32 H 1.09001 * 109.47350 * 270.19297 * 1 2 3 33 33 H 1.09001 * 109.47028 * 30.18620 * 1 2 3 34 34 H 1.08998 * 109.47209 * 150.18796 * 1 2 3 35 35 H 1.07997 * 120.08832 * 0.31892 * 4 3 2 36 36 H 1.08999 * 109.46691 * 90.00225 * 6 5 4 37 37 H 1.08998 * 109.47248 * 210.00582 * 6 5 4 38 38 H 1.09002 * 109.46972 * 330.00269 * 6 5 4 39 39 H 1.07991 * 119.67898 * 180.02562 * 7 5 4 40 40 H 1.08001 * 120.09357 * 180.02562 * 8 7 5 41 41 H 1.08996 * 110.31960 * 300.88756 * 16 15 13 42 42 H 1.09001 * 110.31258 * 63.08305 * 16 15 13 43 43 H 1.09001 * 112.36868 * 64.26942 * 19 17 16 44 44 H 1.08998 * 112.37068 * 191.71143 * 19 17 16 45 45 H 1.08994 * 110.35190 * 169.93729 * 22 20 15 46 46 H 1.09003 * 110.29755 * 47.83995 * 22 20 15 47 47 H 0.97005 * 120.00097 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3420 1.1435 0.0000 4 6 2.0870 2.5211 -0.0006 5 6 3.1273 3.4038 -0.0065 6 6 2.8496 4.8850 -0.0077 7 6 4.4405 2.9499 -0.0126 8 6 4.7168 1.6012 -0.0122 9 6 3.6723 0.6807 -0.0061 10 7 3.6293 -0.6935 -0.0038 11 1 4.3998 -1.2826 -0.0065 12 6 2.3082 -1.0973 0.0031 13 6 1.8432 -2.4924 0.0066 14 8 0.6514 -2.7363 0.0120 15 7 2.7374 -3.5008 -0.0018 16 6 4.2112 -3.3816 -0.0087 17 6 4.7374 -4.8492 -0.0691 18 1 5.7604 -4.9803 -0.4218 19 6 3.5939 -5.5027 -0.9251 20 6 2.4400 -4.9637 0.0007 21 1 1.4196 -5.2471 -0.2573 22 6 2.9579 -5.4601 1.3802 23 7 4.4323 -5.4007 1.2841 24 6 5.3353 -5.7757 2.2428 25 1 6.3944 -5.6836 2.0526 26 6 4.8894 -6.2743 3.4592 27 7 3.5987 -6.3870 3.6908 28 14 6.1212 -6.7866 4.7667 29 1 6.4297 -5.6246 5.6384 30 1 5.5453 -7.8820 5.5873 31 1 7.3680 -7.2601 4.1137 32 1 -0.3634 0.0035 1.0276 33 1 -0.3633 0.8883 -0.5167 34 1 -0.3633 -0.8916 -0.5109 35 1 1.0696 2.8834 0.0041 36 1 2.7871 5.2437 1.0197 37 1 3.6550 5.4053 -0.5259 38 1 1.9056 5.0773 -0.5177 39 1 5.2524 3.6620 -0.0168 40 1 5.7409 1.2582 -0.0165 41 1 4.5418 -2.8247 -0.8854 42 1 4.5556 -2.8934 0.9030 43 1 3.5455 -5.0934 -1.9342 44 1 3.6480 -6.5913 -0.9276 45 1 2.6314 -6.4840 1.5616 46 1 2.6038 -4.8040 2.1754 47 1 3.2870 -6.7358 4.5407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032709790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:28 Heat of formation + Delta-G solvation = 65.023787 kcal Electronic energy + Delta-G solvation = -29638.590886 eV Core-core repulsion = 25787.642758 eV Total energy + Delta-G solvation = -3850.948128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.79315 -41.46764 -39.46319 -38.14088 -35.63405 -34.29986 -33.47917 -32.37201 -31.04824 -30.61633 -30.41025 -28.14121 -27.26793 -26.91041 -25.66127 -24.44423 -22.35879 -22.30433 -21.49275 -20.67505 -20.19513 -19.20357 -18.31940 -18.15879 -17.45675 -16.87959 -16.56733 -16.24942 -15.87330 -15.64852 -15.47576 -15.05144 -14.86835 -14.80610 -14.71197 -14.16539 -13.85445 -13.77469 -13.62982 -13.57131 -13.47958 -13.18088 -13.13474 -12.90347 -12.82858 -12.74910 -12.47916 -12.40074 -12.23297 -12.10637 -12.03217 -11.96079 -11.76434 -11.59642 -11.12752 -10.77924 -10.65662 -9.75978 -9.10305 -8.97932 -8.63968 -7.88823 -5.25311 -0.25760 0.63302 1.05039 1.44521 1.45493 1.54374 1.68604 2.01882 2.21320 2.44515 2.88670 3.23175 3.29250 3.43608 3.67961 3.68807 3.75502 3.95080 3.98342 4.05294 4.13201 4.14621 4.27504 4.33360 4.46053 4.48613 4.60214 4.68567 4.70250 4.77359 4.81517 4.84950 4.94755 4.97064 5.00858 5.04399 5.13075 5.14862 5.18978 5.30083 5.39299 5.42649 5.49619 5.59902 5.63568 5.70924 5.78877 6.04543 6.14313 6.39077 6.45084 6.93980 6.97906 7.65878 8.35374 9.22159 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003163 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.536241 B = 8848.911658 C = 9733.350964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.072 4.072 5 C -0.121 4.121 6 C -0.105 4.105 7 C -0.082 4.082 8 C -0.138 4.138 9 C 0.094 3.906 10 N -0.575 5.575 11 H 0.424 0.576 12 C -0.004 4.004 13 C 0.589 3.411 14 O -0.563 6.563 15 N -0.607 5.607 16 C 0.077 3.923 17 C 0.141 3.859 18 H 0.142 0.858 19 C -0.126 4.126 20 C 0.104 3.896 21 H 0.120 0.880 22 C 0.185 3.815 23 N -0.615 5.615 24 C -0.232 4.232 25 H 0.098 0.902 26 C -0.070 4.070 27 N -0.956 5.956 28 Si 0.977 3.023 29 H -0.292 1.292 30 H -0.301 1.301 31 H -0.260 1.260 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.024 0.976 46 H -0.006 1.006 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 18.966 -12.860 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.091 4.091 5 C -0.122 4.122 6 C -0.162 4.162 7 C -0.101 4.101 8 C -0.158 4.158 9 C -0.017 4.017 10 N -0.184 5.184 11 H 0.269 0.731 12 C -0.113 4.113 13 C 0.380 3.620 14 O -0.444 6.444 15 N -0.339 5.339 16 C -0.048 4.048 17 C 0.034 3.966 18 H 0.160 0.840 19 C -0.165 4.165 20 C 0.001 3.999 21 H 0.138 0.862 22 C 0.059 3.941 23 N -0.339 5.339 24 C -0.361 4.361 25 H 0.115 0.885 26 C -0.263 4.263 27 N -0.605 5.605 28 Si 0.806 3.194 29 H -0.219 1.219 30 H -0.228 1.228 31 H -0.185 1.185 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.042 0.958 46 H 0.013 0.987 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.067 18.615 -12.615 22.582 hybrid contribution 0.464 -1.189 1.574 2.027 sum 2.531 17.426 -11.041 20.784 Atomic orbital electron populations 1.20337 0.88189 1.03302 1.02318 1.19802 0.96669 0.90044 1.03435 1.18292 0.91907 0.94179 1.09543 1.20463 1.00256 0.89542 0.98846 1.19764 0.92736 0.97286 1.02409 1.20765 1.03169 0.89386 1.02881 1.21178 0.97088 0.94230 0.97628 1.20398 0.97241 0.92109 1.06094 1.18766 0.96430 0.83048 1.03437 1.42482 1.06597 1.05794 1.63568 0.73142 1.19810 0.84469 0.92903 1.14124 1.17139 0.85032 0.83149 0.76721 1.90738 1.16088 1.84114 1.53434 1.49176 1.07465 1.06384 1.70919 1.23428 0.79007 1.01848 1.00480 1.23582 0.99028 0.88838 0.85148 0.84015 1.24125 0.93501 1.01229 0.97673 1.24237 1.00107 0.78301 0.97229 0.86192 1.21447 0.84104 0.96931 0.91585 1.45488 1.01447 1.74048 1.12893 1.19536 0.89225 1.34200 0.93137 0.88454 1.25681 0.97625 1.02555 1.00454 1.70156 1.13704 1.52609 1.23986 0.85094 0.78502 0.76871 0.78954 1.21942 1.22846 1.18452 0.91669 0.89522 0.91472 0.84575 0.90801 0.90178 0.91032 0.82530 0.83964 0.88683 0.92780 0.87833 0.89419 0.95819 0.98730 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.41 9.76 71.23 0.70 -1.71 16 2 C -0.09 -2.87 6.18 -19.59 -0.12 -3.00 16 3 C -0.13 -3.79 6.11 -21.36 -0.13 -3.92 16 4 C -0.07 -1.60 9.68 22.30 0.22 -1.38 16 5 C -0.12 -2.16 5.84 -20.11 -0.12 -2.28 16 6 C -0.11 -1.17 9.99 71.24 0.71 -0.46 16 7 C -0.08 -1.39 9.66 22.31 0.22 -1.18 16 8 C -0.14 -2.85 10.08 22.37 0.23 -2.63 16 9 C 0.09 2.53 7.25 39.13 0.28 2.82 16 10 N -0.58 -16.71 5.77 -177.19 -1.02 -17.73 16 11 H 0.42 10.91 4.94 -92.71 -0.46 10.45 16 12 C 0.00 -0.13 6.84 39.91 0.27 0.15 16 13 C 0.59 23.04 7.88 86.56 0.68 23.72 16 14 O -0.56 -24.70 14.91 -4.20 -0.06 -24.76 16 15 N -0.61 -22.34 2.95 -772.85 -2.28 -24.62 16 16 C 0.08 2.41 4.50 87.16 0.39 2.80 16 17 C 0.14 4.65 5.53 46.93 0.26 4.91 16 18 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 19 C -0.13 -3.80 6.83 33.60 0.23 -3.57 16 20 C 0.10 3.97 5.23 46.88 0.25 4.22 16 21 H 0.12 4.51 8.05 -2.38 -0.02 4.49 16 22 C 0.19 9.15 4.75 86.97 0.41 9.57 16 23 N -0.61 -28.77 3.02 -649.65 -1.96 -30.73 16 24 C -0.23 -12.06 10.38 84.04 0.87 -11.19 16 25 H 0.10 4.62 7.83 -2.91 -0.02 4.60 16 26 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 27 N -0.96 -57.97 10.56 21.65 0.23 -57.74 16 28 Si 0.98 44.88 29.55 68.60 2.03 46.91 16 29 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 30 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 31 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.16 6.32 -2.39 -0.02 2.15 16 35 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 38 H 0.07 0.70 8.07 -2.39 -0.02 0.68 16 39 H 0.16 1.63 8.06 -2.92 -0.02 1.61 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.10 2.21 7.11 -2.39 -0.02 2.20 16 42 H 0.05 1.91 7.39 -2.39 -0.02 1.89 16 43 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.02 1.31 7.46 -2.39 -0.02 1.30 16 46 H -0.01 -0.33 7.67 -2.39 -0.02 -0.35 16 47 H 0.24 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -73.50 374.28 3.28 -70.23 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.54 Total: 25.03 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 5.81 Total: 13.42 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -5.04 Total: -130.82 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.50 3.28 -70.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032709790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.249 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds