Wall clock time and date at job start Tue Mar 31 2020 22:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36616 * 120.92416 * 2 1 4 4 C 1.39270 * 119.90885 * 180.02562 * 3 2 1 5 5 N 1.31146 * 121.76883 * 0.02562 * 4 3 2 6 6 C 1.33618 * 121.39751 * 359.97438 * 5 4 3 7 7 C 1.40762 * 120.84082 * 179.97438 * 6 5 4 8 8 C 1.35695 * 120.11107 * 180.02562 * 7 6 5 9 9 C 1.40637 * 120.92763 * 359.96123 * 8 7 6 10 10 C 1.47768 * 119.80042 * 180.02562 * 9 8 7 11 11 O 1.21563 * 119.99599 * 147.36210 * 10 9 8 12 12 N 1.34780 * 120.00030 * 327.35884 * 10 9 8 13 13 C 1.46493 * 119.99917 * 4.28693 * 12 10 9 14 14 C 1.46502 * 119.99639 * 184.29164 * 12 10 9 15 15 H 1.09000 * 110.64203 * 1.68049 * 14 12 10 16 16 C 1.55156 * 110.72203 * 125.02506 * 14 12 10 17 17 C 1.54909 * 101.58359 * 153.86129 * 16 14 12 18 18 N 1.47423 * 104.82815 * 322.98826 * 17 16 14 19 19 C 1.36937 * 125.64511 * 204.09398 * 18 17 16 20 20 H 1.08002 * 119.99853 * 180.02562 * 19 18 17 21 21 C 1.38817 * 120.00239 * 0.04029 * 19 18 17 22 22 N 1.31614 * 119.99451 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00062 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47319 * 60.00421 * 23 21 19 25 25 H 1.48501 * 109.47090 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47076 * 300.00045 * 23 21 19 27 27 C 1.47025 * 108.70742 * 24.13058 * 18 17 16 28 28 C 1.38550 * 120.39554 * 0.04455 * 9 8 7 29 29 C 1.40190 * 119.39714 * 0.22721 * 28 9 8 30 30 H 1.08994 * 109.47470 * 89.99312 * 1 2 3 31 31 H 1.09000 * 109.47170 * 209.99659 * 1 2 3 32 32 H 1.09004 * 109.46983 * 329.99296 * 1 2 3 33 33 H 1.08003 * 120.04042 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.11355 * 179.97438 * 4 3 2 35 35 H 1.08003 * 119.94179 * 0.02562 * 7 6 5 36 36 H 1.08003 * 119.53499 * 179.97438 * 8 7 6 37 37 H 1.08996 * 109.47549 * 95.27442 * 13 12 10 38 38 H 1.09008 * 109.47151 * 215.27362 * 13 12 10 39 39 H 1.09003 * 109.47616 * 335.27226 * 13 12 10 40 40 H 1.09006 * 111.00089 * 271.93612 * 16 14 12 41 41 H 1.09006 * 111.00043 * 35.78396 * 16 14 12 42 42 H 1.09000 * 110.36587 * 204.15072 * 17 16 14 43 43 H 1.08997 * 110.45915 * 81.87536 * 17 16 14 44 44 H 0.97011 * 119.99729 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.88234 * 239.52120 * 27 18 17 46 46 H 1.09002 * 109.88306 * 118.35760 * 27 18 17 47 47 H 1.07993 * 120.29631 * 179.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1720 0.0000 4 6 3.6016 1.1473 -0.0005 5 7 4.2722 0.0202 -0.0016 6 6 3.6480 -1.1612 -0.0016 7 6 4.3795 -2.3638 -0.0032 8 6 3.7304 -3.5554 -0.0038 9 6 2.3252 -3.6131 -0.0020 10 6 1.6440 -4.9244 -0.0020 11 8 0.5778 -5.0554 0.5671 12 7 2.2046 -5.9750 -0.6332 13 6 3.5321 -5.8427 -1.2383 14 6 1.4864 -7.2493 -0.7140 15 1 0.5071 -7.1691 -0.2422 16 6 1.3532 -7.7118 -2.1891 17 6 1.2359 -9.2476 -2.0241 18 7 2.1426 -9.5777 -0.9096 19 6 2.7296 -10.7957 -0.6922 20 1 3.3811 -10.9372 0.1574 21 6 2.4874 -11.8484 -1.5641 22 7 1.6940 -11.6756 -2.5999 23 14 3.2874 -13.5100 -1.2672 24 1 2.8625 -14.0348 0.0555 25 1 2.8716 -14.4571 -2.3327 26 1 4.7646 -13.3590 -1.2886 27 6 2.3117 -8.3829 -0.0696 28 6 1.5758 -2.4477 -0.0004 29 6 2.2308 -1.2083 -0.0056 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6849 2.1163 -0.0004 34 1 4.1437 2.0814 -0.0010 35 1 5.4592 -2.3380 -0.0041 36 1 4.3009 -4.4725 -0.0055 37 1 4.2879 -6.1981 -0.5379 38 1 3.5758 -6.4358 -2.1519 39 1 3.7206 -4.7956 -1.4757 40 1 0.4552 -7.2985 -2.6485 41 1 2.2412 -7.4471 -2.7632 42 1 1.5557 -9.7525 -2.9357 43 1 0.2121 -9.5270 -1.7758 44 1 1.5250 -12.4111 -3.2095 45 1 3.3640 -8.1010 -0.0336 46 1 1.9447 -8.5826 0.9372 47 1 0.4968 -2.4939 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033111091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:51 Heat of formation + Delta-G solvation = 72.555004 kcal Electronic energy + Delta-G solvation = -28761.274813 eV Core-core repulsion = 24910.653263 eV Total energy + Delta-G solvation = -3850.621550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36997 -40.02309 -37.60493 -36.85980 -35.13353 -34.81761 -32.32599 -30.97538 -30.72176 -29.23417 -28.30242 -27.62345 -26.81281 -25.06204 -24.09317 -23.85056 -21.48638 -21.01776 -20.24975 -19.14530 -18.73315 -17.53373 -17.06277 -16.91551 -16.30141 -15.78081 -15.20062 -14.87368 -14.78379 -14.71043 -14.43426 -14.26110 -14.01978 -13.75084 -13.45684 -13.24482 -13.18236 -13.03780 -12.82487 -12.43587 -12.28328 -12.08234 -11.92199 -11.79895 -11.59900 -11.23459 -11.06420 -10.86432 -10.80984 -10.50767 -10.44046 -10.16452 -9.86073 -9.84158 -9.76053 -9.57265 -9.04986 -8.68352 -8.57965 -8.35353 -6.87569 -5.68039 -3.10404 -0.05097 0.38402 1.60099 2.24250 2.96414 3.13416 3.39326 3.43680 3.44942 3.77782 3.94473 4.14004 4.25917 4.33879 4.42834 4.47868 4.71898 4.74808 4.86394 5.00786 5.10930 5.13791 5.17766 5.33137 5.33322 5.38246 5.48080 5.53965 5.56211 5.60712 5.66466 5.69956 5.71418 5.73630 5.88874 5.96923 6.03711 6.16709 6.19246 6.34297 6.45603 6.51985 6.53614 6.66864 6.93373 7.44719 7.51485 7.57436 7.59214 7.81061 8.18753 8.32253 9.18573 9.79143 10.43199 11.35695 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.002227 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.592158 B =12572.456596 C =13122.351183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.012 4.012 3 C -0.188 4.188 4 C 0.141 3.859 5 N -0.482 5.482 6 C 0.145 3.855 7 C -0.102 4.102 8 C -0.087 4.087 9 C -0.123 4.123 10 C 0.555 3.445 11 O -0.538 6.538 12 N -0.591 5.591 13 C 0.056 3.944 14 C 0.126 3.874 15 H 0.105 0.895 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.923 5.923 23 Si 0.916 3.084 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.130 3.870 28 C -0.034 4.034 29 C -0.112 4.112 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.015 0.985 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.026 0.974 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 26.598 2.217 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.208 4.208 4 C -0.031 4.031 5 N -0.191 5.191 6 C 0.023 3.977 7 C -0.120 4.120 8 C -0.106 4.106 9 C -0.126 4.126 10 C 0.343 3.657 11 O -0.416 6.416 12 N -0.322 5.322 13 C -0.086 4.086 14 C 0.023 3.977 15 H 0.123 0.877 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.003 3.997 28 C -0.054 4.054 29 C -0.114 4.114 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.373 26.165 2.415 26.384 hybrid contribution -0.416 -0.805 0.184 0.924 sum 1.957 25.360 2.599 25.568 Atomic orbital electron populations 1.20955 0.89740 1.04037 1.03499 1.20256 0.96814 0.92013 0.92920 1.21756 0.95629 0.98773 1.04630 1.22983 0.91519 0.96478 0.92093 1.68069 1.39902 0.97713 1.13404 1.19006 0.89537 0.92601 0.96535 1.20710 1.00608 0.89673 1.01015 1.21626 0.93362 0.99393 0.96247 1.19969 0.93998 0.93711 1.04921 1.18243 0.84888 0.83642 0.78892 1.90776 1.22379 1.84331 1.44162 1.47730 1.18661 1.11555 1.54245 1.22457 0.83742 1.02886 0.99516 1.22310 0.96328 0.80951 0.98116 0.87738 1.23409 1.00876 1.00673 0.94271 1.21942 0.92822 0.87459 0.94956 1.44427 1.54381 1.07015 1.27041 1.19022 1.21779 0.86030 1.08284 0.90505 1.24794 0.99892 0.98308 0.97608 1.69769 1.40388 1.30946 1.16007 0.86132 0.78760 0.83312 0.77160 1.21182 1.21550 1.21144 1.21509 0.96733 0.87295 0.94167 1.21387 1.00443 0.89696 0.93864 1.18650 0.94126 0.93875 1.04722 0.89841 0.90285 0.90421 0.84428 0.82306 0.84061 0.83016 0.91755 0.90116 0.89719 0.91997 0.91523 0.87231 0.96672 0.93610 0.95430 0.95639 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 9.59 36.01 0.35 -0.43 16 2 C -0.01 -0.10 5.92 -104.22 -0.62 -0.72 16 3 C -0.19 -1.34 9.72 -39.78 -0.39 -1.72 16 4 C 0.14 1.13 11.14 -17.46 -0.19 0.94 16 5 N -0.48 -5.27 10.33 -10.92 -0.11 -5.38 16 6 C 0.14 1.66 6.61 -84.78 -0.56 1.10 16 7 C -0.10 -1.05 9.95 -39.54 -0.39 -1.44 16 8 C -0.09 -0.92 7.30 -39.59 -0.29 -1.21 16 9 C -0.12 -1.56 5.45 -104.98 -0.57 -2.13 16 10 C 0.56 8.71 7.42 -12.36 -0.09 8.62 16 11 O -0.54 -10.19 16.12 5.31 0.09 -10.10 16 12 N -0.59 -9.09 2.88 -172.98 -0.50 -9.59 16 13 C 0.06 0.68 7.82 59.84 0.47 1.15 16 14 C 0.13 2.33 3.36 -66.09 -0.22 2.11 16 15 H 0.10 2.08 7.00 -51.93 -0.36 1.72 16 16 C -0.15 -2.88 6.62 -24.58 -0.16 -3.04 16 17 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 18 N -0.60 -15.32 3.39 -170.07 -0.58 -15.90 16 19 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 23 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.13 2.75 6.88 -3.06 -0.02 2.73 16 28 C -0.03 -0.40 8.89 -38.73 -0.34 -0.74 16 29 C -0.11 -1.22 5.74 -106.82 -0.61 -1.83 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.53 6.51 -51.93 -0.34 0.19 16 32 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 34 H 0.16 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.15 1.38 4.83 -52.48 -0.25 1.13 16 37 H 0.06 0.71 6.98 -51.93 -0.36 0.35 16 38 H 0.08 1.03 6.07 -51.92 -0.32 0.71 16 39 H 0.08 0.84 4.69 -51.93 -0.24 0.59 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.19 6.07 -51.93 -0.32 0.87 16 42 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.14 1.56 6.32 -52.49 -0.33 1.23 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -33.42 369.90 -10.02 -43.44 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.11 Total: 0.77 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.92 Total: 0.32 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.63 Total: -56.88 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.42 -10.02 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033111091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.997 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds