Wall clock time and date at job start Tue Mar 31 2020 22:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36615 * 120.92461 * 2 1 4 4 C 1.39275 * 119.90927 * 180.02562 * 3 2 1 5 5 N 1.31143 * 121.76854 * 0.02562 * 4 3 2 6 6 C 1.33623 * 121.39142 * 359.95436 * 5 4 3 7 7 C 1.40774 * 120.82490 * 180.02562 * 6 5 4 8 8 C 1.35693 * 120.10651 * 180.02562 * 7 6 5 9 9 C 1.40637 * 120.92650 * 359.96140 * 8 7 6 10 10 C 1.47772 * 119.80217 * 179.97438 * 9 8 7 11 11 O 1.21562 * 119.99791 * 215.16178 * 10 9 8 12 12 N 1.34777 * 119.99642 * 35.15658 * 10 9 8 13 13 C 1.46499 * 120.00519 * 5.85844 * 12 10 9 14 14 C 1.46505 * 119.99653 * 185.86292 * 12 10 9 15 15 H 1.08999 * 110.91418 * 3.89569 * 14 12 10 16 16 C 1.55157 * 111.00132 * 239.99987 * 14 12 10 17 17 C 1.54323 * 102.94311 * 206.42163 * 16 14 12 18 18 N 1.47023 * 107.26893 * 22.19142 * 17 16 14 19 19 C 1.36940 * 125.64932 * 181.02294 * 18 17 16 20 20 H 1.07996 * 120.00198 * 174.91984 * 19 18 17 21 21 C 1.38814 * 119.99633 * 354.91906 * 19 18 17 22 22 N 1.31620 * 119.99686 * 214.20407 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 34.48879 * 21 19 18 24 24 H 1.48491 * 109.47120 * 173.99101 * 23 21 19 25 25 H 1.48504 * 109.46606 * 293.99122 * 23 21 19 26 26 H 1.48498 * 109.47181 * 53.98920 * 23 21 19 27 27 C 1.47426 * 108.70524 * 1.28724 * 18 17 16 28 28 C 1.38544 * 120.39879 * 0.27192 * 9 8 7 29 29 C 1.40194 * 119.40049 * 359.52177 * 28 9 8 30 30 H 1.09008 * 109.46787 * 269.98305 * 1 2 3 31 31 H 1.08995 * 109.47164 * 29.97292 * 1 2 3 32 32 H 1.08997 * 109.47348 * 149.97944 * 1 2 3 33 33 H 1.07992 * 120.04368 * 0.04552 * 3 2 1 34 34 H 1.08000 * 119.11568 * 179.97438 * 4 3 2 35 35 H 1.07991 * 119.94870 * 0.02589 * 7 6 5 36 36 H 1.08000 * 119.53425 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.46838 * 274.65062 * 13 12 10 38 38 H 1.09003 * 109.46601 * 34.64612 * 13 12 10 39 39 H 1.08993 * 109.46903 * 154.64752 * 13 12 10 40 40 H 1.09004 * 110.72131 * 88.05624 * 16 14 12 41 41 H 1.08998 * 110.86990 * 324.85862 * 16 14 12 42 42 H 1.09000 * 109.88356 * 262.77977 * 17 16 14 43 43 H 1.08996 * 109.88670 * 141.60976 * 17 16 14 44 44 H 0.96995 * 119.99958 * 5.29025 * 22 21 19 45 45 H 1.08998 * 110.36306 * 94.47976 * 27 18 17 46 46 H 1.08997 * 110.36885 * 216.80105 * 27 18 17 47 47 H 1.07994 * 120.30323 * 179.72850 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1719 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0016 6 6 3.6478 -1.1611 -0.0012 7 6 4.3796 -2.3637 -0.0018 8 6 3.7305 -3.5554 -0.0019 9 6 2.3254 -3.6131 -0.0007 10 6 1.6442 -4.9245 -0.0015 11 8 0.5997 -5.0665 -0.6070 12 7 2.1810 -5.9631 0.6690 13 6 3.3687 -5.7616 1.5027 14 6 1.5769 -7.2936 0.5641 15 1 0.7479 -7.2898 -0.1436 16 6 1.1187 -7.8075 1.9545 17 6 1.1748 -9.3411 1.7919 18 7 2.0990 -9.6292 0.6854 19 6 2.4105 -10.8748 0.2094 20 1 3.0392 -10.9780 -0.6627 21 6 1.9183 -12.0048 0.8479 22 7 2.6444 -13.1015 0.8975 23 14 0.2220 -11.9716 1.6296 24 1 -0.1267 -13.3314 2.1136 25 1 0.2225 -11.0241 2.7731 26 1 -0.7782 -11.5327 0.6235 27 6 2.6397 -8.3553 0.1772 28 6 1.5758 -2.4480 -0.0050 29 6 2.2307 -1.2084 -0.0004 30 1 -0.3633 -0.0003 1.0278 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6849 2.1162 0.0007 34 1 4.1437 2.0813 -0.0010 35 1 5.4592 -2.3379 -0.0021 36 1 4.3011 -4.4724 -0.0028 37 1 4.2636 -5.8398 0.8852 38 1 3.3281 -4.7730 1.9599 39 1 3.3981 -6.5220 2.2830 40 1 0.1020 -7.4796 2.1711 41 1 1.8035 -7.4771 2.7356 42 1 0.1826 -9.7254 1.5557 43 1 1.5426 -9.7981 2.7106 44 1 3.5524 -13.0977 0.5565 45 1 3.5940 -8.1313 0.6538 46 1 2.7563 -8.3977 -0.9057 47 1 0.4969 -2.4941 -0.0085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033111092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:54 Heat of formation + Delta-G solvation = 47.532541 kcal Electronic energy + Delta-G solvation = -28809.491488 eV Core-core repulsion = 24957.784882 eV Total energy + Delta-G solvation = -3851.706606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.16189 -41.18081 -39.32487 -37.79862 -36.48358 -35.67317 -34.44696 -32.13989 -31.47944 -31.10255 -29.77173 -28.79151 -28.07334 -26.28785 -25.16175 -24.62462 -22.80231 -22.35193 -21.99682 -20.64796 -19.57153 -19.50261 -18.51424 -18.05808 -17.38371 -17.19100 -16.70332 -16.27831 -15.90877 -15.60421 -15.53683 -15.40690 -15.23917 -15.12279 -14.63945 -14.45278 -14.18656 -14.02624 -13.96365 -13.83771 -13.77672 -13.44088 -13.27468 -13.07444 -12.98949 -12.82256 -12.57476 -12.47748 -12.37396 -12.23482 -11.87043 -11.56550 -11.19599 -11.15946 -10.98601 -10.51629 -10.46918 -9.88695 -9.76676 -9.28409 -9.17530 -8.69931 -5.37695 -0.81835 -0.35374 0.83016 1.33771 1.43176 1.53084 1.71077 1.76064 2.07621 2.55871 2.93452 3.01680 3.22048 3.34657 3.39430 3.47518 3.63513 3.72075 3.75672 3.79200 3.96457 3.98915 4.02518 4.16535 4.24457 4.32978 4.39072 4.44481 4.50144 4.57678 4.69592 4.70414 4.74833 4.79788 4.82977 4.84979 4.87968 4.92248 5.04801 5.05929 5.12889 5.14894 5.18313 5.30293 5.41680 5.50442 5.59381 5.75423 6.07729 6.24489 6.79574 6.88712 6.94349 7.45519 8.11040 8.78889 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.002339 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.971456 B =11970.254577 C =12591.211125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.022 4.022 3 C -0.180 4.180 4 C 0.143 3.857 5 N -0.511 5.511 6 C 0.128 3.872 7 C -0.101 4.101 8 C -0.077 4.077 9 C -0.139 4.139 10 C 0.558 3.442 11 O -0.577 6.577 12 N -0.591 5.591 13 C 0.064 3.936 14 C 0.135 3.865 15 H 0.087 0.913 16 C -0.124 4.124 17 C 0.114 3.886 18 N -0.628 5.628 19 C -0.336 4.336 20 H 0.049 0.951 21 C -0.062 4.062 22 N -0.936 5.936 23 Si 1.074 2.926 24 H -0.307 1.307 25 H -0.236 1.236 26 H -0.292 1.292 27 C 0.134 3.866 28 C -0.033 4.033 29 C -0.128 4.128 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.174 0.826 34 H 0.193 0.807 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.252 0.748 45 H 0.050 0.950 46 H 0.029 0.971 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 34.888 3.118 35.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.028 4.028 5 N -0.221 5.221 6 C 0.007 3.993 7 C -0.120 4.120 8 C -0.097 4.097 9 C -0.142 4.142 10 C 0.349 3.651 11 O -0.458 6.458 12 N -0.321 5.321 13 C -0.077 4.077 14 C 0.030 3.970 15 H 0.105 0.895 16 C -0.163 4.163 17 C -0.011 4.011 18 N -0.356 5.356 19 C -0.463 4.463 20 H 0.067 0.933 21 C -0.258 4.258 22 N -0.578 5.578 23 Si 0.900 3.100 24 H -0.235 1.235 25 H -0.161 1.161 26 H -0.220 1.220 27 C 0.008 3.992 28 C -0.053 4.053 29 C -0.130 4.130 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.191 0.809 34 H 0.210 0.790 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.048 0.952 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.629 33.693 3.548 33.885 hybrid contribution 0.479 -0.025 -1.444 1.522 sum -0.150 33.668 2.104 33.734 Atomic orbital electron populations 1.21009 0.88215 1.04615 1.04252 1.20600 0.98053 0.91739 0.92614 1.22164 0.95392 0.99743 1.02600 1.23670 0.92424 0.96880 0.89833 1.68126 1.40657 0.98264 1.15014 1.19281 0.89971 0.93314 0.96738 1.20881 1.01305 0.89376 1.00405 1.21416 0.92205 0.99786 0.96263 1.19744 0.94785 0.92069 1.07585 1.18689 0.83804 0.84546 0.78110 1.90762 1.24613 1.84555 1.45848 1.47636 1.30385 1.07200 1.46926 1.22376 0.86154 1.03985 0.95201 1.22124 0.95889 0.80772 0.98185 0.89453 1.22900 1.03367 0.93095 0.96897 1.21995 0.92334 0.95508 0.91235 1.44809 1.51211 1.01710 1.37853 1.19812 1.30489 0.83522 1.12507 0.93293 1.26783 1.07509 0.92150 0.99408 1.71025 1.09832 1.32565 1.44342 0.83950 0.73425 0.74898 0.77718 1.23546 1.16060 1.22005 1.21916 0.95676 0.84752 0.96890 1.21466 1.00476 0.89999 0.93362 1.18816 0.94316 0.94422 1.05493 0.88875 0.88297 0.91302 0.80873 0.79046 0.82698 0.82426 0.90275 0.88880 0.89681 0.89173 0.88301 0.96023 0.94190 0.93874 0.93252 0.95233 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.60 71.23 0.68 -0.45 16 2 C -0.02 -0.31 5.92 -19.61 -0.12 -0.42 16 3 C -0.18 -1.77 9.72 22.14 0.22 -1.56 16 4 C 0.14 1.73 11.14 85.05 0.95 2.68 16 5 N -0.51 -9.68 10.33 -188.45 -1.95 -11.63 16 6 C 0.13 2.61 6.61 40.37 0.27 2.88 16 7 C -0.10 -1.84 9.95 22.30 0.22 -1.62 16 8 C -0.08 -1.42 7.70 22.27 0.17 -1.25 16 9 C -0.14 -3.17 5.17 -20.10 -0.10 -3.27 16 10 C 0.56 16.06 7.35 86.76 0.64 16.70 16 11 O -0.58 -21.14 16.19 -3.91 -0.06 -21.20 16 12 N -0.59 -15.64 2.91 -817.88 -2.38 -18.02 16 13 C 0.06 1.17 7.44 127.77 0.95 2.12 16 14 C 0.14 4.50 3.45 46.46 0.16 4.66 16 15 H 0.09 3.35 7.05 -2.39 -0.02 3.34 16 16 C -0.12 -3.85 6.49 31.78 0.21 -3.64 16 17 C 0.11 4.74 4.58 86.73 0.40 5.14 16 18 N -0.63 -30.64 3.38 -691.56 -2.34 -32.98 16 19 C -0.34 -19.66 10.39 84.03 0.87 -18.78 16 20 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 21 C -0.06 -3.71 5.42 84.86 0.46 -3.25 16 22 N -0.94 -59.85 13.70 21.65 0.30 -59.55 16 23 Si 1.07 52.77 25.17 68.60 1.73 54.50 16 24 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 25 H -0.24 -10.01 5.09 99.48 0.51 -9.50 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 C 0.13 5.28 6.79 86.93 0.59 5.87 16 28 C -0.03 -0.71 8.89 22.82 0.20 -0.51 16 29 C -0.13 -2.48 5.74 -21.29 -0.12 -2.60 16 30 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.10 0.47 8.10 -2.39 -0.02 0.45 16 32 H 0.07 0.77 6.51 -2.39 -0.02 0.76 16 33 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 34 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.16 2.26 8.06 -2.92 -0.02 2.24 16 36 H 0.16 2.37 5.19 -2.91 -0.02 2.35 16 37 H 0.08 1.21 6.36 -2.39 -0.02 1.20 16 38 H 0.09 1.35 6.50 -2.39 -0.02 1.34 16 39 H 0.08 1.54 6.38 -2.39 -0.02 1.53 16 40 H 0.09 2.50 8.14 -2.39 -0.02 2.49 16 41 H 0.10 2.55 6.46 -2.39 -0.02 2.53 16 42 H 0.02 0.95 4.72 -2.39 -0.01 0.94 16 43 H 0.04 1.72 6.84 -2.39 -0.02 1.70 16 44 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 45 H 0.05 1.78 6.97 -2.39 -0.02 1.76 16 46 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.14 2.89 6.35 -2.91 -0.02 2.87 16 Total: -1.00 -79.51 366.14 2.71 -76.80 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.77 Total: 9.39 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.64 Total: 2.70 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -6.37 Total: -122.18 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.06 Total: -21.20 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 1.73 Total: 54.50 kcal Total: -79.51 2.71 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033111092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.332 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds