Wall clock time and date at job start Tue Mar 31 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30823 * 119.22672 * 2 1 4 4 C 1.33793 * 121.71898 * 180.02562 * 3 2 1 5 5 C 1.40534 * 120.82860 * 180.02562 * 4 3 2 6 6 C 1.36132 * 119.81151 * 179.97438 * 5 4 3 7 7 C 1.39335 * 121.09721 * 0.02562 * 6 5 4 8 8 C 1.36136 * 120.84113 * 359.95557 * 7 6 5 9 9 C 1.40556 * 119.61446 * 0.04344 * 8 7 6 10 10 C 1.40497 * 121.22152 * 180.23959 * 9 8 7 11 11 C 1.39048 * 117.95721 * 180.21350 * 10 9 8 12 12 C 1.47760 * 120.26456 * 179.78987 * 11 10 9 13 13 O 1.21563 * 119.99722 * 229.05529 * 12 11 10 14 14 N 1.34770 * 120.00082 * 49.04963 * 12 11 10 15 15 C 1.46501 * 120.00337 * 5.86718 * 14 12 11 16 16 C 1.46505 * 120.00278 * 185.86390 * 14 12 11 17 17 H 1.09001 * 110.77595 * 1.78398 * 16 14 12 18 18 C 1.55151 * 110.72345 * 125.02478 * 16 14 12 19 19 C 1.55128 * 101.48694 * 82.69898 * 18 16 14 20 20 N 1.47423 * 104.72146 * 37.29575 * 19 18 16 21 21 C 1.36937 * 125.64784 * 155.82109 * 20 19 18 22 22 H 1.08001 * 119.99769 * 190.75572 * 21 20 19 23 23 C 1.38811 * 120.00191 * 10.75146 * 21 20 19 24 24 N 1.31619 * 119.99521 * 33.29916 * 23 21 20 25 25 Si 1.86795 * 120.00149 * 213.30284 * 23 21 20 26 26 H 1.48498 * 109.47357 * 180.02562 * 25 23 21 27 27 H 1.48507 * 109.47032 * 299.99939 * 25 23 21 28 28 H 1.48495 * 109.47516 * 59.99454 * 25 23 21 29 29 C 1.47020 * 108.70202 * 335.55428 * 20 19 18 30 30 H 1.09004 * 109.47477 * 273.25839 * 1 2 3 31 31 H 1.08997 * 109.47554 * 33.25897 * 1 2 3 32 32 H 1.09003 * 109.46914 * 153.26024 * 1 2 3 33 33 H 1.08000 * 120.09065 * 359.95469 * 5 4 3 34 34 H 1.07998 * 119.44671 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.58434 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.19643 * 180.02562 * 8 7 6 37 37 H 1.08000 * 121.01999 * 0.02562 * 10 9 8 38 38 H 1.09002 * 109.47366 * 265.47309 * 15 14 12 39 39 H 1.08996 * 109.46746 * 25.46903 * 15 14 12 40 40 H 1.09000 * 109.47205 * 145.47352 * 15 14 12 41 41 H 1.08995 * 111.00888 * 200.94181 * 18 16 14 42 42 H 1.09006 * 111.00308 * 324.75175 * 18 16 14 43 43 H 1.09001 * 110.49784 * 278.45477 * 19 18 16 44 44 H 1.09003 * 110.34469 * 156.05866 * 19 18 16 45 45 H 0.96995 * 120.00318 * 359.61777 * 24 23 21 46 46 H 1.09002 * 109.88307 * 120.70749 * 29 20 19 47 47 H 1.09003 * 109.88435 * 241.86685 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1457 1.1417 0.0000 4 6 3.4824 1.1999 -0.0005 5 6 4.1495 2.4368 0.0000 6 6 5.5103 2.4719 0.0000 7 6 6.2605 1.2977 -0.0010 8 6 5.6512 0.0803 -0.0012 9 6 4.2476 0.0060 -0.0012 10 6 3.5838 -1.2323 0.0036 11 6 2.1933 -1.2265 -0.0013 12 6 1.4434 -2.4997 -0.0012 13 8 0.5433 -2.6749 -0.7992 14 7 1.7574 -3.4667 0.8835 15 6 2.7527 -3.2096 1.9272 16 6 1.1033 -4.7750 0.8015 17 1 0.4169 -4.8119 -0.0445 18 6 2.1564 -5.9102 0.7040 19 6 2.5325 -6.1117 2.1954 20 7 1.2662 -5.9322 2.9287 21 6 0.9787 -6.4499 4.1634 22 1 -0.0316 -6.4111 4.5432 23 6 1.9857 -7.0245 4.9268 24 7 3.2125 -6.5525 4.8601 25 14 1.5996 -8.4674 6.0484 26 1 2.8369 -8.8942 6.7498 27 1 0.5805 -8.0583 7.0482 28 1 1.0739 -9.5964 5.2396 29 6 0.3656 -5.1001 2.1175 30 1 -0.3634 0.0584 1.0260 31 1 -0.3634 0.8593 -0.5636 32 1 -0.3633 -0.9178 -0.4624 33 1 3.5840 3.3570 0.0001 34 1 6.0169 3.4257 0.0000 35 1 7.3390 1.3540 -0.0014 36 1 6.2428 -0.8233 -0.0016 37 1 4.1366 -2.1600 0.0079 38 1 3.7306 -3.5525 1.5892 39 1 2.7943 -2.1402 2.1340 40 1 2.4739 -3.7447 2.8349 41 1 1.7180 -6.8147 0.2825 42 1 3.0221 -5.5911 0.1235 43 1 3.2618 -5.3649 2.5094 44 1 2.9242 -7.1163 2.3551 45 1 3.4142 -5.8069 4.2735 46 1 -0.5520 -5.6477 1.9026 47 1 0.1332 -4.1777 2.6498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033122622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:30 Heat of formation + Delta-G solvation = 58.871420 kcal Electronic energy + Delta-G solvation = -29613.971297 eV Core-core repulsion = 25762.756382 eV Total energy + Delta-G solvation = -3851.214915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33465 -39.92035 -37.99154 -37.09504 -34.86196 -33.73085 -32.32291 -32.07434 -30.43737 -29.20832 -28.27989 -27.96539 -26.42536 -24.90018 -24.02240 -22.83779 -22.39748 -21.37252 -20.28491 -19.22566 -18.37552 -17.71868 -17.42249 -16.99840 -16.36556 -15.83182 -15.33159 -14.91128 -14.65807 -14.52785 -14.46823 -14.17277 -13.73622 -13.65146 -13.41582 -13.20742 -13.15009 -12.93907 -12.63104 -12.32242 -12.14583 -12.04235 -11.99592 -11.82088 -11.73198 -11.50965 -11.11918 -10.85411 -10.71555 -10.65160 -10.49126 -10.33456 -10.06760 -9.99569 -9.68700 -9.50995 -8.90374 -8.53487 -8.47311 -8.34731 -7.00927 -6.25522 -3.13401 0.02599 0.43763 1.64626 2.37377 2.79914 3.06366 3.46960 3.51991 3.69010 3.81737 3.93758 4.23694 4.33470 4.44931 4.53376 4.54102 4.72516 4.83833 4.95007 5.11934 5.14467 5.16831 5.25881 5.30991 5.39903 5.51925 5.53043 5.54663 5.58192 5.61976 5.66731 5.68615 5.79878 5.96255 6.01537 6.02859 6.05686 6.08334 6.12249 6.27024 6.28581 6.35657 6.54194 6.55921 6.79034 6.90478 6.91383 7.43665 7.69847 7.72827 8.12118 8.43619 8.93603 9.76727 10.30797 11.14295 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002967 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.454850 B = 9435.093571 C =10364.186968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.208 3.792 3 N -0.481 5.481 4 C 0.146 3.854 5 C -0.100 4.100 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.084 4.084 9 C -0.115 4.115 10 C -0.014 4.014 11 C -0.175 4.175 12 C 0.565 3.435 13 O -0.534 6.534 14 N -0.585 5.585 15 C 0.069 3.931 16 C 0.126 3.874 17 H 0.106 0.894 18 C -0.145 4.145 19 C 0.136 3.864 20 N -0.601 5.601 21 C -0.345 4.345 22 H 0.067 0.933 23 C -0.023 4.023 24 N -0.911 5.911 25 Si 1.064 2.936 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.128 3.872 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.052 0.948 45 H 0.267 0.733 46 H 0.037 0.963 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 15.182 -11.379 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 N -0.190 5.190 4 C 0.024 3.976 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.142 4.142 8 C -0.103 4.103 9 C -0.118 4.118 10 C -0.040 4.040 11 C -0.180 4.180 12 C 0.352 3.648 13 O -0.413 6.413 14 N -0.316 5.316 15 C -0.074 4.074 16 C 0.023 3.977 17 H 0.124 0.876 18 C -0.185 4.185 19 C 0.010 3.990 20 N -0.329 5.329 21 C -0.472 4.472 22 H 0.085 0.915 23 C -0.225 4.225 24 N -0.552 5.552 25 Si 0.894 3.106 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.222 1.222 29 C 0.002 3.998 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.838 14.810 -10.566 18.825 hybrid contribution -0.023 0.346 -0.932 0.994 sum 4.815 15.157 -11.498 19.624 Atomic orbital electron populations 1.21142 0.87868 1.05723 1.03748 1.21445 0.97362 0.86260 0.89455 1.67860 1.08286 1.28000 1.14807 1.18985 0.89108 0.93037 0.96463 1.20806 0.94213 0.96349 1.00527 1.20962 0.93680 0.98827 0.97811 1.20921 1.00459 0.92251 1.00614 1.21067 0.92440 0.98797 0.97990 1.18767 0.94981 0.93527 1.04477 1.22013 0.92952 0.97879 0.91203 1.20764 0.94402 0.95239 1.07596 1.18042 0.82928 0.82876 0.80920 1.90714 1.30514 1.80141 1.39905 1.47758 1.41230 1.12738 1.29918 1.22164 0.91194 1.01510 0.92533 1.22189 0.95008 0.80774 0.99751 0.87622 1.23205 0.98280 0.97692 0.99291 1.21785 0.89675 0.99891 0.87608 1.44604 1.12555 1.58553 1.17219 1.19680 0.95955 1.37489 0.94093 0.91463 1.25674 0.93616 1.02823 1.00363 1.70870 1.22343 1.26352 1.35615 0.83506 0.75275 0.76444 0.75405 1.21173 1.22043 1.22171 1.21626 0.93752 0.94375 0.90056 0.90041 0.90078 0.87764 0.84623 0.85197 0.85324 0.84925 0.83532 0.92499 0.91856 0.88235 0.90298 0.91585 0.95050 0.92981 0.92176 0.94479 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.81 36.00 0.35 -1.26 16 2 C 0.21 2.94 6.82 -82.15 -0.56 2.38 16 3 N -0.48 -6.75 10.20 -6.94 -0.07 -6.82 16 4 C 0.15 1.85 6.61 -84.79 -0.56 1.29 16 5 C -0.10 -1.01 9.97 -39.47 -0.39 -1.41 16 6 C -0.09 -0.74 9.94 -39.93 -0.40 -1.13 16 7 C -0.12 -0.97 9.96 -39.93 -0.40 -1.37 16 8 C -0.08 -0.77 9.77 -39.46 -0.39 -1.16 16 9 C -0.12 -1.36 5.74 -106.81 -0.61 -1.97 16 10 C -0.01 -0.17 7.83 -38.43 -0.30 -0.47 16 11 C -0.17 -2.46 4.67 -104.83 -0.49 -2.95 16 12 C 0.57 8.92 6.67 -12.37 -0.08 8.84 16 13 O -0.53 -9.55 14.12 5.31 0.08 -9.47 16 14 N -0.59 -9.30 2.82 -172.98 -0.49 -9.79 16 15 C 0.07 1.04 7.15 59.85 0.43 1.47 16 16 C 0.13 2.17 3.57 -66.10 -0.24 1.94 16 17 H 0.11 1.80 7.02 -51.93 -0.36 1.43 16 18 C -0.15 -2.49 6.54 -24.47 -0.16 -2.65 16 19 C 0.14 2.91 4.40 -2.41 -0.01 2.90 16 20 N -0.60 -14.42 2.93 -169.93 -0.50 -14.92 16 21 C -0.35 -9.42 10.00 -15.06 -0.15 -9.57 16 22 H 0.07 1.86 8.01 -52.49 -0.42 1.44 16 23 C -0.02 -0.63 4.97 -17.43 -0.09 -0.71 16 24 N -0.91 -26.22 12.99 55.49 0.72 -25.50 16 25 Si 1.06 24.84 30.03 -169.99 -5.10 19.74 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.13 2.63 6.21 -3.07 -0.02 2.61 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.46 5.30 -51.93 -0.28 1.19 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.15 1.51 7.03 -52.49 -0.37 1.14 16 38 H 0.06 0.77 7.19 -51.93 -0.37 0.39 16 39 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 40 H 0.10 1.88 5.53 -51.93 -0.29 1.59 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.03 0.68 4.27 -51.93 -0.22 0.46 16 44 H 0.05 1.25 7.74 -51.93 -0.40 0.85 16 45 H 0.27 7.53 5.98 -40.82 -0.24 7.28 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -32.00 370.41 -10.15 -42.15 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.30 Total: 2.26 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -4.06 Total: -3.23 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.34 Total: -57.02 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.00 -10.15 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033122622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.017 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds