Wall clock time and date at job start Tue Mar 31 2020 22:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30823 * 119.22672 * 2 1 4 4 C 1.33793 * 121.71898 * 180.02562 * 3 2 1 5 5 C 1.40534 * 120.82860 * 180.02562 * 4 3 2 6 6 C 1.36132 * 119.81151 * 179.97438 * 5 4 3 7 7 C 1.39335 * 121.09721 * 0.02562 * 6 5 4 8 8 C 1.36136 * 120.84113 * 359.95557 * 7 6 5 9 9 C 1.40556 * 119.61446 * 0.04344 * 8 7 6 10 10 C 1.40497 * 121.22152 * 180.23959 * 9 8 7 11 11 C 1.39048 * 117.95721 * 180.21350 * 10 9 8 12 12 C 1.47760 * 120.26456 * 179.78987 * 11 10 9 13 13 O 1.21563 * 119.99722 * 229.05529 * 12 11 10 14 14 N 1.34770 * 120.00082 * 49.04963 * 12 11 10 15 15 C 1.46501 * 120.00337 * 5.86718 * 14 12 11 16 16 C 1.46505 * 120.00278 * 185.86390 * 14 12 11 17 17 H 1.09001 * 110.77595 * 1.78398 * 16 14 12 18 18 C 1.55151 * 110.72345 * 125.02478 * 16 14 12 19 19 C 1.55128 * 101.48694 * 82.69898 * 18 16 14 20 20 N 1.47423 * 104.72146 * 37.29575 * 19 18 16 21 21 C 1.36937 * 125.64784 * 155.82109 * 20 19 18 22 22 H 1.08001 * 119.99769 * 190.75572 * 21 20 19 23 23 C 1.38811 * 120.00191 * 10.75146 * 21 20 19 24 24 N 1.31619 * 119.99521 * 33.29916 * 23 21 20 25 25 Si 1.86795 * 120.00149 * 213.30284 * 23 21 20 26 26 H 1.48498 * 109.47357 * 180.02562 * 25 23 21 27 27 H 1.48507 * 109.47032 * 299.99939 * 25 23 21 28 28 H 1.48495 * 109.47516 * 59.99454 * 25 23 21 29 29 C 1.47020 * 108.70202 * 335.55428 * 20 19 18 30 30 H 1.09004 * 109.47477 * 273.25839 * 1 2 3 31 31 H 1.08997 * 109.47554 * 33.25897 * 1 2 3 32 32 H 1.09003 * 109.46914 * 153.26024 * 1 2 3 33 33 H 1.08000 * 120.09065 * 359.95469 * 5 4 3 34 34 H 1.07998 * 119.44671 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.58434 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.19643 * 180.02562 * 8 7 6 37 37 H 1.08000 * 121.01999 * 0.02562 * 10 9 8 38 38 H 1.09002 * 109.47366 * 265.47309 * 15 14 12 39 39 H 1.08996 * 109.46746 * 25.46903 * 15 14 12 40 40 H 1.09000 * 109.47205 * 145.47352 * 15 14 12 41 41 H 1.08995 * 111.00888 * 200.94181 * 18 16 14 42 42 H 1.09006 * 111.00308 * 324.75175 * 18 16 14 43 43 H 1.09001 * 110.49784 * 278.45477 * 19 18 16 44 44 H 1.09003 * 110.34469 * 156.05866 * 19 18 16 45 45 H 0.96995 * 120.00318 * 359.61777 * 24 23 21 46 46 H 1.09002 * 109.88307 * 120.70749 * 29 20 19 47 47 H 1.09003 * 109.88435 * 241.86685 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1457 1.1417 0.0000 4 6 3.4824 1.1999 -0.0005 5 6 4.1495 2.4368 0.0000 6 6 5.5103 2.4719 0.0000 7 6 6.2605 1.2977 -0.0010 8 6 5.6512 0.0803 -0.0012 9 6 4.2476 0.0060 -0.0012 10 6 3.5838 -1.2323 0.0036 11 6 2.1933 -1.2265 -0.0013 12 6 1.4434 -2.4997 -0.0012 13 8 0.5433 -2.6749 -0.7992 14 7 1.7574 -3.4667 0.8835 15 6 2.7527 -3.2096 1.9272 16 6 1.1033 -4.7750 0.8015 17 1 0.4169 -4.8119 -0.0445 18 6 2.1564 -5.9102 0.7040 19 6 2.5325 -6.1117 2.1954 20 7 1.2662 -5.9322 2.9287 21 6 0.9787 -6.4499 4.1634 22 1 -0.0316 -6.4111 4.5432 23 6 1.9857 -7.0245 4.9268 24 7 3.2125 -6.5525 4.8601 25 14 1.5996 -8.4674 6.0484 26 1 2.8369 -8.8942 6.7498 27 1 0.5805 -8.0583 7.0482 28 1 1.0739 -9.5964 5.2396 29 6 0.3656 -5.1001 2.1175 30 1 -0.3634 0.0584 1.0260 31 1 -0.3634 0.8593 -0.5636 32 1 -0.3633 -0.9178 -0.4624 33 1 3.5840 3.3570 0.0001 34 1 6.0169 3.4257 0.0000 35 1 7.3390 1.3540 -0.0014 36 1 6.2428 -0.8233 -0.0016 37 1 4.1366 -2.1600 0.0079 38 1 3.7306 -3.5525 1.5892 39 1 2.7943 -2.1402 2.1340 40 1 2.4739 -3.7447 2.8349 41 1 1.7180 -6.8147 0.2825 42 1 3.0221 -5.5911 0.1235 43 1 3.2618 -5.3649 2.5094 44 1 2.9242 -7.1163 2.3551 45 1 3.4142 -5.8069 4.2735 46 1 -0.5520 -5.6477 1.9026 47 1 0.1332 -4.1777 2.6498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033122622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:29 Heat of formation + Delta-G solvation = 40.988174 kcal Electronic energy + Delta-G solvation = -29614.746773 eV Core-core repulsion = 25762.756382 eV Total energy + Delta-G solvation = -3851.990391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.31617 -41.11154 -39.37053 -38.06265 -36.32339 -34.87423 -33.91243 -32.99714 -31.45005 -30.83315 -29.76539 -28.89006 -27.79250 -26.36373 -25.45506 -23.71257 -23.25458 -22.54493 -22.09614 -20.51834 -19.64633 -19.33567 -18.46972 -18.16131 -17.45543 -16.83177 -16.45276 -16.35975 -15.87516 -15.63873 -15.61822 -15.42773 -15.25427 -15.06147 -14.55737 -14.44795 -14.21337 -14.04481 -13.89085 -13.68937 -13.51745 -13.40122 -13.15916 -12.75537 -12.70518 -12.57414 -12.47970 -12.44240 -12.32582 -12.14309 -11.97812 -11.85901 -11.64551 -11.60653 -11.16537 -10.58206 -10.40088 -9.85480 -9.74491 -9.28348 -8.98571 -8.41654 -5.24721 -0.81356 -0.43529 0.82992 1.33389 1.58476 1.65345 1.68696 1.84857 1.97261 2.62294 2.98003 3.03875 3.17646 3.21123 3.47496 3.51357 3.54367 3.66747 3.80675 3.82978 3.93531 4.05453 4.15549 4.19666 4.29315 4.34845 4.41274 4.44393 4.46279 4.53273 4.58668 4.65789 4.72369 4.76830 4.78795 4.87204 4.89182 4.95137 5.01689 5.07177 5.15237 5.23721 5.34391 5.41357 5.44156 5.46189 5.67734 5.84300 6.17432 6.34558 6.76003 6.87114 6.90768 7.72232 8.29638 8.99794 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002967 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.454850 B = 9435.093571 C =10364.186968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.190 3.810 3 N -0.497 5.497 4 C 0.121 3.879 5 C -0.122 4.122 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.091 4.091 9 C -0.130 4.130 10 C -0.004 4.004 11 C -0.198 4.198 12 C 0.572 3.428 13 O -0.558 6.558 14 N -0.586 5.586 15 C 0.079 3.921 16 C 0.139 3.861 17 H 0.114 0.886 18 C -0.128 4.128 19 C 0.140 3.860 20 N -0.618 5.618 21 C -0.356 4.356 22 H 0.055 0.945 23 C -0.069 4.069 24 N -0.934 5.934 25 Si 1.112 2.888 26 H -0.290 1.290 27 H -0.279 1.279 28 H -0.284 1.284 29 C 0.129 3.871 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.031 0.969 44 H 0.020 0.980 45 H 0.260 0.740 46 H 0.037 0.963 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 16.154 -12.306 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.037 3.963 3 N -0.206 5.206 4 C 0.000 4.000 5 C -0.140 4.140 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.109 4.109 9 C -0.132 4.132 10 C -0.030 4.030 11 C -0.203 4.203 12 C 0.361 3.639 13 O -0.438 6.438 14 N -0.316 5.316 15 C -0.063 4.063 16 C 0.035 3.965 17 H 0.132 0.868 18 C -0.167 4.167 19 C 0.015 3.985 20 N -0.346 5.346 21 C -0.484 4.484 22 H 0.073 0.927 23 C -0.266 4.266 24 N -0.577 5.577 25 Si 0.937 3.063 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.211 1.211 29 C 0.003 3.997 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.183 0.817 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 7.077 15.808 -11.513 20.797 hybrid contribution -0.611 0.219 -0.655 0.922 sum 6.466 16.027 -12.168 21.136 Atomic orbital electron populations 1.21061 0.87717 1.05253 1.03893 1.21553 0.97776 0.86577 0.90434 1.67844 1.09408 1.27912 1.15465 1.19452 0.88898 0.94612 0.97028 1.21025 0.95420 0.95722 1.01878 1.21421 0.92802 1.00609 0.94764 1.21396 1.02246 0.91500 0.98367 1.21399 0.91297 1.00596 0.97615 1.18993 0.96336 0.92903 1.04930 1.22241 0.92200 0.98974 0.89549 1.20586 0.95196 0.94058 1.10481 1.18244 0.82428 0.83090 0.80148 1.90696 1.31644 1.80597 1.40875 1.47728 1.41349 1.12354 1.30217 1.22046 0.91733 1.01745 0.90795 1.21967 0.95003 0.81674 0.97853 0.86839 1.23111 0.99167 0.98023 0.96373 1.21742 0.88651 0.97895 0.90172 1.44769 1.13999 1.59093 1.16768 1.19857 0.95419 1.37601 0.95534 0.92713 1.26890 0.93315 1.04440 1.01973 1.70954 1.23064 1.26977 1.36689 0.82861 0.75167 0.73910 0.74341 1.21596 1.20543 1.21066 1.21677 0.93732 0.93176 0.91159 0.89780 0.89122 0.89324 0.84015 0.81812 0.81922 0.82616 0.81707 0.90342 0.90703 0.92028 0.89402 0.88764 0.95168 0.96154 0.92957 0.94553 0.96798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.81 71.24 0.70 -2.51 16 2 C 0.19 5.45 6.82 43.27 0.29 5.74 16 3 N -0.50 -14.03 10.20 -175.86 -1.79 -15.82 16 4 C 0.12 2.98 6.61 40.29 0.27 3.24 16 5 C -0.12 -2.23 9.97 22.34 0.22 -2.01 16 6 C -0.08 -0.92 9.94 22.04 0.22 -0.70 16 7 C -0.12 -1.32 9.96 22.04 0.22 -1.10 16 8 C -0.09 -1.35 9.77 22.35 0.22 -1.13 16 9 C -0.13 -2.81 5.74 -21.28 -0.12 -2.94 16 10 C 0.00 -0.09 7.83 23.02 0.18 0.09 16 11 C -0.20 -5.53 4.67 -20.00 -0.09 -5.62 16 12 C 0.57 17.95 6.67 86.76 0.58 18.53 16 13 O -0.56 -20.05 14.12 -3.91 -0.06 -20.11 16 14 N -0.59 -18.33 2.82 -819.47 -2.31 -20.64 16 15 C 0.08 2.38 7.15 127.77 0.91 3.29 16 16 C 0.14 4.72 3.57 46.18 0.16 4.89 16 17 H 0.11 3.76 7.02 -2.39 -0.02 3.75 16 18 C -0.13 -4.20 6.54 32.06 0.21 -3.99 16 19 C 0.14 6.07 4.40 86.93 0.38 6.45 16 20 N -0.62 -30.32 2.93 -691.55 -2.03 -32.34 16 21 C -0.36 -19.89 10.00 84.03 0.84 -19.05 16 22 H 0.05 3.12 8.01 -2.91 -0.02 3.10 16 23 C -0.07 -3.85 4.97 84.86 0.42 -3.43 16 24 N -0.93 -54.71 12.99 21.65 0.28 -54.43 16 25 Si 1.11 50.55 30.03 68.60 2.06 52.61 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 29 C 0.13 5.37 6.21 86.73 0.54 5.90 16 30 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.60 5.30 -2.39 -0.01 2.59 16 33 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.17 2.99 7.03 -2.91 -0.02 2.97 16 38 H 0.08 1.99 7.19 -2.39 -0.02 1.97 16 39 H 0.07 2.06 6.30 -2.39 -0.02 2.04 16 40 H 0.06 2.37 5.53 -2.39 -0.01 2.35 16 41 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 43 H 0.03 1.33 4.27 -2.39 -0.01 1.32 16 44 H 0.02 0.99 7.74 -2.39 -0.02 0.97 16 45 H 0.26 15.04 5.98 -92.71 -0.55 14.48 16 46 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.01 0.62 8.04 -2.39 -0.02 0.60 16 Total: -1.00 -71.60 370.41 3.52 -68.08 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.21 Total: 17.01 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.15 Total: 5.65 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -5.85 Total: -123.24 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.06 Total: -20.11 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.06 Total: 52.61 kcal Total: -71.60 3.52 -68.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033122622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.071 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds