Wall clock time and date at job start Tue Mar 31 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39223 * 119.15722 * 2 1 4 4 C 1.36630 * 119.90676 * 179.97438 * 3 2 1 5 5 C 1.40796 * 118.15863 * 0.02562 * 4 3 2 6 6 C 1.40474 * 121.26790 * 180.02562 * 5 4 3 7 7 C 1.36311 * 120.08539 * 179.97438 * 6 5 4 8 8 C 1.38910 * 121.06071 * 0.02562 * 7 6 5 9 9 C 1.38706 * 120.72378 * 359.97438 * 8 7 6 10 10 C 1.47435 * 120.33400 * 179.97438 * 9 8 7 11 11 O 1.21608 * 120.00270 * 229.26224 * 10 9 8 12 12 N 1.34769 * 120.00195 * 49.26188 * 10 9 8 13 13 C 1.46499 * 120.00002 * 355.55190 * 12 10 9 14 14 C 1.46501 * 120.00453 * 175.55653 * 12 10 9 15 15 H 1.09002 * 110.64042 * 1.69285 * 14 12 10 16 16 C 1.55166 * 110.72296 * 125.01949 * 14 12 10 17 17 C 1.55132 * 101.48177 * 82.69709 * 16 14 12 18 18 N 1.47431 * 104.72121 * 37.29915 * 17 16 14 19 19 C 1.36934 * 125.64781 * 155.81455 * 18 17 16 20 20 H 1.07997 * 120.00186 * 190.54528 * 19 18 17 21 21 C 1.38813 * 119.99888 * 10.55051 * 19 18 17 22 22 N 1.31623 * 120.00040 * 8.81085 * 21 19 18 23 23 Si 1.86799 * 119.99789 * 188.81731 * 21 19 18 24 24 H 1.48505 * 109.47036 * 265.00245 * 23 21 19 25 25 H 1.48494 * 109.47289 * 25.00307 * 23 21 19 26 26 H 1.48503 * 109.46988 * 145.00270 * 23 21 19 27 27 C 1.47018 * 108.70198 * 335.54883 * 18 17 16 28 28 C 1.41555 * 118.93747 * 0.24880 * 5 4 3 29 29 N 1.31229 * 119.15260 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47180 * 89.99645 * 1 2 3 31 31 H 1.08999 * 109.47334 * 209.99841 * 1 2 3 32 32 H 1.09002 * 109.46903 * 330.00057 * 1 2 3 33 33 H 1.08005 * 120.04541 * 359.95730 * 3 2 1 34 34 H 1.08008 * 120.92205 * 180.02562 * 4 3 2 35 35 H 1.08000 * 119.95733 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.47247 * 179.97438 * 7 6 5 37 37 H 1.08001 * 119.63942 * 179.97438 * 8 7 6 38 38 H 1.08996 * 109.47764 * 268.47903 * 13 12 10 39 39 H 1.09002 * 109.46888 * 28.48232 * 13 12 10 40 40 H 1.09001 * 109.46937 * 148.47671 * 13 12 10 41 41 H 1.08991 * 111.00388 * 200.93945 * 16 14 12 42 42 H 1.08999 * 110.99959 * 324.75557 * 16 14 12 43 43 H 1.08998 * 110.49680 * 278.45871 * 17 16 14 44 44 H 1.08994 * 110.33866 * 156.05853 * 17 16 14 45 45 H 0.97006 * 119.99780 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.88346 * 120.70575 * 27 18 17 47 47 H 1.09004 * 109.88265 * 241.87106 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2158 0.0000 4 6 3.5515 1.2337 0.0005 5 6 4.2321 0.0012 0.0005 6 6 5.6357 -0.0567 0.0016 7 6 6.2699 -1.2633 0.0021 8 6 5.5500 -2.4513 0.0010 9 6 4.1630 -2.4394 -0.0001 10 6 3.4075 -3.7055 -0.0018 11 8 2.5064 -3.8749 -0.8006 12 7 3.7156 -4.6753 0.8819 13 6 4.8625 -4.5117 1.7786 14 6 2.9037 -5.8931 0.9458 15 1 2.1132 -5.8677 0.1958 16 6 3.7908 -7.1541 0.7713 17 6 4.3316 -7.3531 2.2117 18 7 3.2027 -6.9925 3.0888 19 6 3.0187 -7.4300 4.3732 20 1 2.0801 -7.2496 4.8759 21 6 4.0388 -8.1053 5.0293 22 7 5.2366 -8.1745 4.4881 23 14 3.7115 -8.9159 6.6800 24 1 4.1026 -7.9894 7.7727 25 1 2.2661 -9.2362 6.7963 26 1 4.5055 -10.1665 6.7835 27 6 2.3106 -6.0805 2.3582 28 6 3.4788 -1.1973 -0.0054 29 7 2.1463 -1.1461 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6324 2.1436 -0.0007 34 1 4.0944 2.1674 0.0010 35 1 6.2131 0.8560 0.0028 36 1 7.3493 -1.2962 0.0025 37 1 6.0760 -3.3945 0.0010 38 1 5.7511 -4.9385 1.3136 39 1 5.0261 -3.4511 1.9695 40 1 4.6635 -5.0238 2.7200 41 1 3.1954 -8.0095 0.4523 42 1 4.6053 -6.9651 0.0721 43 1 5.1801 -6.6940 2.3952 44 1 4.6169 -8.3932 2.3689 45 1 5.9494 -8.6467 4.9464 46 1 1.3136 -6.5152 2.2868 47 1 2.2625 -5.1195 2.8705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033180554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:37 Heat of formation + Delta-G solvation = 62.792442 kcal Electronic energy + Delta-G solvation = -29629.526445 eV Core-core repulsion = 25778.481558 eV Total energy + Delta-G solvation = -3851.044887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18293 -39.61893 -37.57315 -37.04978 -34.34016 -33.60891 -32.22130 -32.02396 -30.35892 -29.07044 -28.05963 -27.91763 -26.13255 -24.54973 -23.97656 -23.31196 -22.60323 -20.57960 -20.15680 -18.74415 -18.39193 -17.40064 -16.89733 -16.58723 -16.33157 -15.63734 -15.05983 -14.89166 -14.71268 -14.59007 -14.14942 -14.00280 -13.79031 -13.52092 -13.16086 -13.08850 -12.81108 -12.64748 -12.34249 -12.21352 -12.11426 -11.98860 -11.74108 -11.57852 -11.46743 -11.36041 -11.02188 -10.85845 -10.78692 -10.64489 -10.29025 -10.05336 -9.91820 -9.69849 -9.64070 -9.24231 -8.84003 -8.58385 -8.37058 -8.14090 -6.79710 -5.75982 -3.08102 0.07377 0.64085 1.67369 2.63858 3.04756 3.37075 3.39569 3.45520 3.47526 3.96145 4.01575 4.33118 4.48111 4.50305 4.59237 4.64296 4.80598 4.90495 5.10299 5.12312 5.30789 5.40815 5.45190 5.46094 5.47800 5.55684 5.62276 5.68655 5.75901 5.76525 5.83501 5.87850 5.91543 5.96944 6.06325 6.14904 6.29383 6.32433 6.34661 6.41875 6.57967 6.61401 6.66741 6.77272 7.12112 7.48320 7.56799 7.77311 7.78940 7.90398 8.25193 8.52248 9.19105 9.80363 10.48252 11.37077 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.002995 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.624073 B = 9348.107695 C = 9714.277363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.160 3.840 3 C -0.174 4.174 4 C -0.055 4.055 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.123 4.123 8 C -0.065 4.065 9 C -0.096 4.096 10 C 0.564 3.436 11 O -0.525 6.525 12 N -0.589 5.589 13 C 0.066 3.934 14 C 0.129 3.871 15 H 0.100 0.900 16 C -0.156 4.156 17 C 0.166 3.834 18 N -0.602 5.602 19 C -0.227 4.227 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.127 3.873 28 C 0.167 3.833 29 N -0.455 5.455 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.252 0.748 46 H 0.033 0.967 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 19.665 -10.616 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.007 3.993 3 C -0.193 4.193 4 C -0.081 4.081 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.141 4.141 8 C -0.086 4.086 9 C -0.100 4.100 10 C 0.351 3.649 11 O -0.401 6.401 12 N -0.321 5.321 13 C -0.076 4.076 14 C 0.026 3.974 15 H 0.118 0.882 16 C -0.196 4.196 17 C 0.041 3.959 18 N -0.329 5.329 19 C -0.355 4.355 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.206 1.206 26 H -0.217 1.217 27 C 0.000 4.000 28 C 0.044 3.956 29 N -0.164 5.164 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.008 18.573 -10.861 21.516 hybrid contribution 0.580 0.437 1.005 1.240 sum 0.589 19.010 -9.856 21.421 Atomic orbital electron populations 1.20792 0.88553 1.03744 1.03366 1.21610 0.97421 0.88000 0.92239 1.21731 0.95062 0.99280 1.03275 1.21440 0.94467 0.96993 0.95184 1.18774 0.94833 0.93839 1.04229 1.21090 0.92480 0.98639 0.97589 1.20840 1.00618 0.91844 1.00773 1.21564 0.92356 0.99572 0.95074 1.19832 0.93491 0.92591 1.04096 1.17901 0.83188 0.82661 0.81153 1.90756 1.30657 1.80082 1.38651 1.47696 1.30393 1.17877 1.36169 1.22249 0.87609 1.01554 0.96230 1.22102 0.93565 0.83175 0.98546 0.88157 1.23386 0.99189 0.96272 1.00725 1.21663 0.89749 1.00952 0.83538 1.44521 1.24505 1.52199 1.11642 1.19020 0.98130 1.30342 0.88044 0.90725 1.24791 0.95199 1.01819 0.98451 1.69943 1.00864 1.46731 1.39050 0.86137 0.77416 0.78873 0.83552 1.21693 1.20636 1.21666 1.21645 0.94101 0.93909 0.90354 1.18493 0.89190 0.91343 0.96539 1.67939 1.08080 1.28467 1.11887 0.90051 0.89996 0.90588 0.84501 0.84229 0.84999 0.84767 0.84221 0.92686 0.92068 0.87818 0.91008 0.91940 0.94536 0.91424 0.93764 0.94887 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.15 36.01 0.37 -0.65 16 2 C 0.16 2.00 6.78 -82.48 -0.56 1.44 16 3 C -0.17 -1.64 9.64 -39.80 -0.38 -2.03 16 4 C -0.06 -0.51 9.89 -39.20 -0.39 -0.90 16 5 C -0.11 -1.37 5.74 -106.82 -0.61 -1.98 16 6 C -0.08 -0.74 9.75 -39.43 -0.38 -1.12 16 7 C -0.12 -1.17 9.93 -40.03 -0.40 -1.57 16 8 C -0.07 -0.80 7.62 -39.16 -0.30 -1.10 16 9 C -0.10 -1.52 4.92 -104.61 -0.51 -2.03 16 10 C 0.56 10.50 6.95 -12.52 -0.09 10.41 16 11 O -0.52 -11.32 15.94 5.27 0.08 -11.24 16 12 N -0.59 -10.73 2.82 -173.10 -0.49 -11.22 16 13 C 0.07 1.11 7.14 59.85 0.43 1.54 16 14 C 0.13 2.52 3.58 -66.09 -0.24 2.29 16 15 H 0.10 1.98 7.00 -51.93 -0.36 1.62 16 16 C -0.16 -3.01 6.54 -24.46 -0.16 -3.17 16 17 C 0.17 3.86 4.55 -2.40 -0.01 3.85 16 18 N -0.60 -15.13 2.98 -169.93 -0.51 -15.63 16 19 C -0.23 -6.26 10.24 -15.06 -0.15 -6.42 16 20 H 0.07 2.03 7.84 -52.49 -0.41 1.61 16 21 C -0.01 -0.17 5.41 -17.43 -0.09 -0.26 16 22 N -0.92 -26.10 10.68 55.49 0.59 -25.50 16 23 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.13 2.77 6.23 -3.07 -0.02 2.76 16 28 C 0.17 2.60 6.59 -84.58 -0.56 2.04 16 29 N -0.46 -7.46 9.30 -7.01 -0.07 -7.53 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 34 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.54 6.51 -52.49 -0.34 1.19 16 38 H 0.05 0.83 7.26 -51.93 -0.38 0.45 16 39 H 0.06 0.92 5.80 -51.93 -0.30 0.62 16 40 H 0.10 2.12 5.30 -51.93 -0.28 1.85 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.87 5.42 -51.93 -0.28 0.59 16 44 H 0.07 1.78 6.95 -51.93 -0.36 1.41 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -34.18 373.70 -10.33 -44.51 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.49 Total: 1.05 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -4.07 Total: 3.09 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.47 Total: -59.89 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.18 -10.33 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033180554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.304 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds