Wall clock time and date at job start Tue Mar 31 2020 22:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36533 * 120.87432 * 2 1 4 4 C 1.40244 * 119.81503 * 179.69554 * 3 2 1 5 5 C 1.48274 * 119.24509 * 180.32477 * 4 3 2 6 6 O 1.21502 * 119.99259 * 352.74882 * 5 4 3 7 7 N 1.34773 * 120.00422 * 172.74530 * 5 4 3 8 8 C 1.46505 * 119.99772 * 1.99927 * 7 5 4 9 9 C 1.46501 * 119.99879 * 182.00472 * 7 5 4 10 10 H 1.08995 * 110.64152 * 1.68502 * 9 7 5 11 11 C 1.55160 * 110.71755 * 125.02394 * 9 7 5 12 12 C 1.54909 * 101.57630 * 153.86219 * 11 9 7 13 13 N 1.47424 * 104.83752 * 322.98964 * 12 11 9 14 14 C 1.36935 * 125.64909 * 204.17183 * 13 12 11 15 15 H 1.08002 * 120.00039 * 179.97438 * 14 13 12 16 16 C 1.38810 * 120.00073 * 359.95102 * 14 13 12 17 17 N 1.31613 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46994 * 59.99587 * 18 16 14 20 20 H 1.48497 * 109.47427 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47120 * 299.99964 * 18 16 14 22 22 C 1.47022 * 108.70002 * 24.12677 * 13 12 11 23 23 N 1.31905 * 121.51751 * 0.62076 * 4 3 2 24 24 C 1.33243 * 121.30150 * 359.67709 * 23 4 3 25 25 C 1.40829 * 120.99218 * 180.02562 * 24 23 4 26 26 C 1.35995 * 119.73486 * 179.97438 * 25 24 23 27 27 C 1.39440 * 121.08973 * 359.97438 * 26 25 24 28 28 C 1.36128 * 120.91796 * 0.02562 * 27 26 25 29 29 C 1.40421 * 119.64998 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47036 * 269.71681 * 1 2 3 31 31 H 1.09005 * 109.46799 * 149.72058 * 1 2 3 32 32 H 1.08998 * 109.47043 * 29.71758 * 1 2 3 33 33 H 1.07998 * 120.09706 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.46501 * 83.78291 * 8 7 5 35 35 H 1.08995 * 109.47064 * 203.77759 * 8 7 5 36 36 H 1.08997 * 109.46888 * 323.77908 * 8 7 5 37 37 H 1.09001 * 111.00139 * 271.93245 * 11 9 7 38 38 H 1.09000 * 111.00594 * 35.79364 * 11 9 7 39 39 H 1.09011 * 110.36434 * 204.14825 * 12 11 9 40 40 H 1.09002 * 110.46501 * 81.87903 * 12 11 9 41 41 H 0.96992 * 120.00386 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.88336 * 239.52660 * 22 13 12 43 43 H 1.09000 * 109.88002 * 118.36192 * 22 13 12 44 44 H 1.07996 * 120.13139 * 359.97438 * 25 24 23 45 45 H 1.08004 * 119.45510 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.53692 * 180.02562 * 27 26 25 47 47 H 1.08005 * 120.17495 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6099 1.1459 0.0065 5 6 4.3580 2.4261 0.0137 6 8 3.7639 3.4776 -0.1188 7 7 5.6970 2.4233 0.1673 8 6 6.4183 1.1534 0.2832 9 6 6.4310 3.6901 0.2186 10 1 5.7454 4.5345 0.1482 11 6 7.2852 3.7777 1.5109 12 6 8.4158 4.7411 1.0715 13 7 8.6897 4.3863 -0.3330 14 6 9.8659 4.6092 -0.9977 15 1 9.9675 4.3105 -2.0306 16 6 10.9276 5.2195 -0.3441 17 7 10.8040 5.5835 0.9146 18 14 12.5320 5.5242 -1.2512 19 1 12.2795 6.4015 -2.4225 20 1 13.4992 6.1844 -0.3381 21 1 13.0924 4.2293 -1.7143 22 6 7.4910 3.7525 -0.9013 23 7 4.2786 0.0090 0.0004 24 6 3.6481 -1.1649 -0.0057 25 6 4.3686 -2.3749 -0.0115 26 6 3.6990 -3.5586 -0.0172 27 6 2.3052 -3.5974 -0.0167 28 6 1.5735 -2.4495 -0.0111 29 6 2.2292 -1.2078 -0.0052 30 1 -0.3633 -0.0051 1.0277 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5094 33 1 1.6836 2.1162 -0.0004 34 1 6.6175 0.7566 -0.7123 35 1 7.3615 1.3176 0.8043 36 1 5.8126 0.4414 0.8438 37 1 6.7081 4.2016 2.3327 38 1 7.6871 2.8010 1.7806 39 1 9.3053 4.5859 1.6824 40 1 8.0834 5.7768 1.1432 41 1 11.5457 6.0103 1.3712 42 1 7.7304 2.7451 -1.2417 43 1 7.1162 4.3480 -1.7337 44 1 5.4485 -2.3629 -0.0116 45 1 4.2561 -4.4839 -0.0213 46 1 1.7991 -4.5514 -0.0208 47 1 0.4944 -2.4935 -0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033200197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:00 Heat of formation + Delta-G solvation = 72.920081 kcal Electronic energy + Delta-G solvation = -28958.175573 eV Core-core repulsion = 25107.569853 eV Total energy + Delta-G solvation = -3850.605719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42109 -39.69814 -37.58178 -36.91616 -35.37872 -34.46524 -32.11900 -30.97965 -30.67751 -29.19253 -28.23732 -27.49005 -26.53679 -25.15845 -24.11299 -23.81610 -21.73979 -20.70489 -20.17354 -18.98196 -18.30550 -17.97999 -16.98796 -16.81128 -16.21943 -15.55631 -15.44156 -15.01944 -14.67803 -14.53648 -14.48675 -14.04919 -13.84076 -13.68091 -13.46753 -13.35740 -12.90618 -12.86326 -12.55562 -12.42294 -12.29071 -11.97840 -11.81125 -11.73192 -11.58649 -11.43109 -11.01246 -10.78446 -10.77167 -10.50738 -10.45780 -10.13492 -10.03991 -9.77916 -9.55171 -9.22684 -9.09852 -8.63032 -8.53420 -8.25592 -6.82060 -5.63138 -3.05253 -0.08317 0.39819 1.62134 2.23512 3.05945 3.14114 3.42592 3.46600 3.48074 3.80499 3.87267 4.14444 4.31781 4.41761 4.48976 4.52275 4.75852 4.81586 4.89413 5.04137 5.13160 5.15631 5.33914 5.44425 5.47897 5.51456 5.55147 5.63690 5.64963 5.68922 5.74570 5.76550 5.88764 6.00502 6.02736 6.08875 6.13509 6.26139 6.34319 6.43268 6.51303 6.61355 6.66794 6.73978 7.01405 7.43711 7.51779 7.62640 7.65104 7.86346 8.25676 8.37522 9.23642 9.84158 10.48757 11.40664 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.002467 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.613793 B =11349.325716 C =12232.500374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.127 4.127 4 C 0.129 3.871 5 C 0.560 3.440 6 O -0.539 6.539 7 N -0.574 5.574 8 C 0.074 3.926 9 C 0.122 3.878 10 H 0.104 0.896 11 C -0.152 4.152 12 C 0.154 3.846 13 N -0.602 5.602 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.916 3.084 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.131 3.869 23 N -0.436 5.436 24 C 0.121 3.879 25 C -0.084 4.084 26 C -0.106 4.106 27 C -0.111 4.111 28 C -0.102 4.102 29 C -0.088 4.088 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.015 0.985 41 H 0.253 0.747 42 H 0.029 0.971 43 H 0.025 0.975 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.912 -19.562 0.947 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.040 4.040 3 C -0.148 4.148 4 C -0.024 4.024 5 C 0.346 3.654 6 O -0.416 6.416 7 N -0.303 5.303 8 C -0.068 4.068 9 C 0.019 3.981 10 H 0.122 0.878 11 C -0.192 4.192 12 C 0.029 3.971 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.572 5.572 18 Si 0.746 3.254 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.004 3.996 23 N -0.149 5.149 24 C -0.002 4.002 25 C -0.102 4.102 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.121 4.121 29 C -0.090 4.090 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.049 -18.958 0.907 27.608 hybrid contribution 0.026 0.119 -0.552 0.565 sum -20.022 -18.839 0.355 27.494 Atomic orbital electron populations 1.20874 0.89509 1.03783 1.03284 1.20130 0.96874 0.91668 0.95343 1.21606 0.93573 0.99679 0.99925 1.21431 0.91675 0.92295 0.96999 1.17930 0.82287 0.87159 0.77999 1.90764 1.68394 1.31418 1.50985 1.47784 1.05636 1.08542 1.68387 1.22367 0.97495 0.84470 1.02488 1.22364 0.93360 0.84944 0.97388 0.87788 1.23414 0.98468 1.01746 0.95526 1.21939 0.95832 0.92976 0.86388 1.44425 1.09376 1.69870 1.09198 1.19027 0.88189 1.32824 0.94911 0.90529 1.24783 0.98466 1.00956 0.96428 1.69766 1.31173 1.46600 1.09640 0.86137 0.82983 0.77869 0.78409 1.21217 1.21569 1.21172 1.21507 0.87552 0.96626 0.93928 1.68519 1.37910 0.97362 1.11090 1.19050 0.89798 0.92509 0.98857 1.20911 1.00700 0.89921 0.98704 1.20943 0.94445 0.98142 0.99021 1.20987 0.94194 0.98534 0.99166 1.21019 1.00125 0.91149 0.99807 1.18838 0.94002 0.94267 1.01896 0.90038 0.90678 0.90325 0.83244 0.92576 0.91258 0.88129 0.92004 0.91446 0.87263 0.96677 0.93647 0.95284 0.95689 0.84241 0.85106 0.85466 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.59 36.01 0.35 -0.36 16 2 C -0.03 -0.31 5.92 -104.30 -0.62 -0.93 16 3 C -0.13 -1.53 9.22 -39.44 -0.36 -1.89 16 4 C 0.13 1.85 6.63 -82.96 -0.55 1.30 16 5 C 0.56 9.61 7.66 -12.14 -0.09 9.52 16 6 O -0.54 -10.48 15.68 5.36 0.08 -10.40 16 7 N -0.57 -9.92 2.88 -172.79 -0.50 -10.42 16 8 C 0.07 1.11 8.02 59.85 0.48 1.59 16 9 C 0.12 2.41 3.36 -66.09 -0.22 2.19 16 10 H 0.10 2.16 6.99 -51.93 -0.36 1.80 16 11 C -0.15 -3.03 6.59 -24.58 -0.16 -3.19 16 12 C 0.15 3.81 5.89 -2.53 -0.01 3.80 16 13 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 14 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16 18 Si 0.92 22.28 29.55 -169.99 -5.02 17.26 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.92 6.88 -3.06 -0.02 2.90 16 23 N -0.44 -5.82 5.96 -7.54 -0.04 -5.87 16 24 C 0.12 1.39 6.61 -84.85 -0.56 0.83 16 25 C -0.08 -0.77 9.99 -39.41 -0.39 -1.17 16 26 C -0.11 -0.74 9.94 -39.94 -0.40 -1.14 16 27 C -0.11 -0.71 9.96 -39.89 -0.40 -1.11 16 28 C -0.10 -0.75 9.31 -39.52 -0.37 -1.12 16 29 C -0.09 -0.89 5.75 -106.71 -0.61 -1.50 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.34 6.51 -51.93 -0.34 0.00 16 32 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.15 1.71 7.62 -52.49 -0.40 1.31 16 34 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.07 1.08 6.14 -51.93 -0.32 0.76 16 36 H 0.10 1.39 5.28 -52.15 -0.28 1.11 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.29 6.15 -51.93 -0.32 0.97 16 39 H 0.11 3.00 5.87 -51.92 -0.30 2.69 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.64 7.08 -51.93 -0.37 0.27 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 46 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.13 0.64 6.44 -52.48 -0.34 0.30 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -33.02 373.09 -10.45 -43.46 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.37 Total: 0.36 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -4.20 Total: 2.89 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.56 Total: -59.20 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.02 -10.45 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033200197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.384 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds