Wall clock time and date at job start Tue Mar 31 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36533 * 120.87432 * 2 1 4 4 C 1.40244 * 119.81503 * 179.69554 * 3 2 1 5 5 C 1.48274 * 119.24509 * 180.32477 * 4 3 2 6 6 O 1.21502 * 119.99259 * 352.74882 * 5 4 3 7 7 N 1.34773 * 120.00422 * 172.74530 * 5 4 3 8 8 C 1.46505 * 119.99772 * 1.99927 * 7 5 4 9 9 C 1.46501 * 119.99879 * 182.00472 * 7 5 4 10 10 H 1.08995 * 110.64152 * 1.68502 * 9 7 5 11 11 C 1.55160 * 110.71755 * 125.02394 * 9 7 5 12 12 C 1.54909 * 101.57630 * 153.86219 * 11 9 7 13 13 N 1.47424 * 104.83752 * 322.98964 * 12 11 9 14 14 C 1.36935 * 125.64909 * 204.17183 * 13 12 11 15 15 H 1.08002 * 120.00039 * 179.97438 * 14 13 12 16 16 C 1.38810 * 120.00073 * 359.95102 * 14 13 12 17 17 N 1.31613 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46994 * 59.99587 * 18 16 14 20 20 H 1.48497 * 109.47427 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47120 * 299.99964 * 18 16 14 22 22 C 1.47022 * 108.70002 * 24.12677 * 13 12 11 23 23 N 1.31905 * 121.51751 * 0.62076 * 4 3 2 24 24 C 1.33243 * 121.30150 * 359.67709 * 23 4 3 25 25 C 1.40829 * 120.99218 * 180.02562 * 24 23 4 26 26 C 1.35995 * 119.73486 * 179.97438 * 25 24 23 27 27 C 1.39440 * 121.08973 * 359.97438 * 26 25 24 28 28 C 1.36128 * 120.91796 * 0.02562 * 27 26 25 29 29 C 1.40421 * 119.64998 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47036 * 269.71681 * 1 2 3 31 31 H 1.09005 * 109.46799 * 149.72058 * 1 2 3 32 32 H 1.08998 * 109.47043 * 29.71758 * 1 2 3 33 33 H 1.07998 * 120.09706 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.46501 * 83.78291 * 8 7 5 35 35 H 1.08995 * 109.47064 * 203.77759 * 8 7 5 36 36 H 1.08997 * 109.46888 * 323.77908 * 8 7 5 37 37 H 1.09001 * 111.00139 * 271.93245 * 11 9 7 38 38 H 1.09000 * 111.00594 * 35.79364 * 11 9 7 39 39 H 1.09011 * 110.36434 * 204.14825 * 12 11 9 40 40 H 1.09002 * 110.46501 * 81.87903 * 12 11 9 41 41 H 0.96992 * 120.00386 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.88336 * 239.52660 * 22 13 12 43 43 H 1.09000 * 109.88002 * 118.36192 * 22 13 12 44 44 H 1.07996 * 120.13139 * 359.97438 * 25 24 23 45 45 H 1.08004 * 119.45510 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.53692 * 180.02562 * 27 26 25 47 47 H 1.08005 * 120.17495 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6099 1.1459 0.0065 5 6 4.3580 2.4261 0.0137 6 8 3.7639 3.4776 -0.1188 7 7 5.6970 2.4233 0.1673 8 6 6.4183 1.1534 0.2832 9 6 6.4310 3.6901 0.2186 10 1 5.7454 4.5345 0.1482 11 6 7.2852 3.7777 1.5109 12 6 8.4158 4.7411 1.0715 13 7 8.6897 4.3863 -0.3330 14 6 9.8659 4.6092 -0.9977 15 1 9.9675 4.3105 -2.0306 16 6 10.9276 5.2195 -0.3441 17 7 10.8040 5.5835 0.9146 18 14 12.5320 5.5242 -1.2512 19 1 12.2795 6.4015 -2.4225 20 1 13.4992 6.1844 -0.3381 21 1 13.0924 4.2293 -1.7143 22 6 7.4910 3.7525 -0.9013 23 7 4.2786 0.0090 0.0004 24 6 3.6481 -1.1649 -0.0057 25 6 4.3686 -2.3749 -0.0115 26 6 3.6990 -3.5586 -0.0172 27 6 2.3052 -3.5974 -0.0167 28 6 1.5735 -2.4495 -0.0111 29 6 2.2292 -1.2078 -0.0052 30 1 -0.3633 -0.0051 1.0277 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5094 33 1 1.6836 2.1162 -0.0004 34 1 6.6175 0.7566 -0.7123 35 1 7.3615 1.3176 0.8043 36 1 5.8126 0.4414 0.8438 37 1 6.7081 4.2016 2.3327 38 1 7.6871 2.8010 1.7806 39 1 9.3053 4.5859 1.6824 40 1 8.0834 5.7768 1.1432 41 1 11.5457 6.0103 1.3712 42 1 7.7304 2.7451 -1.2417 43 1 7.1162 4.3480 -1.7337 44 1 5.4485 -2.3629 -0.0116 45 1 4.2561 -4.4839 -0.0213 46 1 1.7991 -4.5514 -0.0208 47 1 0.4944 -2.4935 -0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033200197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:58 Heat of formation + Delta-G solvation = 54.557551 kcal Electronic energy + Delta-G solvation = -28958.971832 eV Core-core repulsion = 25107.569853 eV Total energy + Delta-G solvation = -3851.401978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28953 -40.96828 -39.10169 -37.86164 -36.55624 -35.65692 -34.03275 -31.89376 -31.32287 -31.04033 -29.34392 -28.75447 -27.83925 -26.77457 -25.49998 -24.54337 -22.63584 -22.17071 -21.83515 -20.42172 -19.11437 -18.97454 -18.88699 -17.84347 -17.59210 -16.76523 -16.71250 -16.33480 -15.94395 -15.72854 -15.43767 -15.33721 -15.06524 -14.64707 -14.46801 -14.35654 -14.15199 -13.96501 -13.92245 -13.71157 -13.47752 -13.23277 -13.02058 -12.98351 -12.73221 -12.68307 -12.42187 -12.33935 -12.32985 -12.16304 -12.07059 -11.85437 -11.45277 -11.38908 -11.18346 -10.76887 -10.25535 -9.91426 -9.65439 -9.19282 -8.94659 -7.79261 -5.25463 -0.86836 -0.35451 0.91235 1.31201 1.46431 1.50209 1.56520 1.74355 2.15888 2.49066 2.85563 3.05312 3.30605 3.43989 3.52916 3.67711 3.73502 3.78928 3.83497 3.90497 4.10504 4.17684 4.22652 4.30546 4.32935 4.48887 4.51423 4.51884 4.62457 4.66802 4.75612 4.77370 4.81686 4.94108 4.97524 5.00958 5.02828 5.10075 5.14494 5.23094 5.42011 5.42915 5.46013 5.50406 5.55145 5.55662 5.74342 5.88328 6.23509 6.26101 6.56822 6.94272 7.07133 7.72254 8.36599 9.22576 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.002467 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.613793 B =11349.325716 C =12232.500374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.149 4.149 4 C 0.104 3.896 5 C 0.559 3.441 6 O -0.570 6.570 7 N -0.577 5.577 8 C 0.083 3.917 9 C 0.137 3.863 10 H 0.092 0.908 11 C -0.133 4.133 12 C 0.158 3.842 13 N -0.621 5.621 14 C -0.243 4.243 15 H 0.079 0.921 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.984 3.016 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.274 1.274 22 C 0.133 3.867 23 N -0.450 5.450 24 C 0.096 3.904 25 C -0.107 4.107 26 C -0.092 4.092 27 C -0.102 4.102 28 C -0.104 4.104 29 C -0.099 4.099 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.083 0.917 40 H -0.010 1.010 41 H 0.250 0.750 42 H 0.036 0.964 43 H 0.015 0.985 44 H 0.141 0.859 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.855 -23.285 0.685 32.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.169 4.169 4 C -0.047 4.047 5 C 0.347 3.653 6 O -0.449 6.449 7 N -0.307 5.307 8 C -0.059 4.059 9 C 0.033 3.967 10 H 0.110 0.890 11 C -0.172 4.172 12 C 0.033 3.967 13 N -0.347 5.347 14 C -0.372 4.372 15 H 0.097 0.903 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.812 3.188 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.200 1.200 22 C 0.007 3.993 23 N -0.163 5.163 24 C -0.027 4.027 25 C -0.126 4.126 26 C -0.112 4.112 27 C -0.120 4.120 28 C -0.122 4.122 29 C -0.101 4.101 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.008 0.992 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.159 0.841 45 H 0.178 0.822 46 H 0.181 0.819 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.012 -22.710 0.637 31.634 hybrid contribution 0.528 1.059 -0.500 1.285 sum -21.484 -21.651 0.137 30.502 Atomic orbital electron populations 1.21004 0.86590 1.05125 1.04604 1.20534 0.98754 0.90642 0.92847 1.21608 0.92718 1.00688 1.01933 1.21000 0.92276 0.91255 1.00201 1.18425 0.81983 0.88143 0.76741 1.90725 1.68949 1.32964 1.52290 1.47775 1.05950 1.08123 1.68820 1.22412 0.97142 0.83687 1.02656 1.21959 0.92523 0.86168 0.96083 0.89028 1.23214 0.96855 1.01059 0.96082 1.21718 0.96312 0.92868 0.85799 1.44685 1.10028 1.70094 1.09943 1.19392 0.89278 1.33144 0.95386 0.90274 1.25656 1.01737 1.00875 0.97331 1.70005 1.31820 1.46993 1.10906 0.85073 0.78638 0.77970 0.77135 1.20658 1.21653 1.20018 1.21548 0.87098 0.96212 0.94491 1.68288 1.38648 0.97768 1.11578 1.19443 0.91119 0.92352 0.99767 1.21082 1.01098 0.90047 1.00344 1.21370 0.95221 0.98300 0.96313 1.21475 0.93941 0.99822 0.96755 1.21390 1.01774 0.90073 0.98977 1.19143 0.93561 0.95675 1.01764 0.88487 0.88419 0.89921 0.83628 0.92584 0.91912 0.86640 0.90074 0.90309 0.89884 0.99202 0.94066 0.94635 0.96653 0.84105 0.82232 0.81857 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.59 71.24 0.68 -0.37 16 2 C -0.02 -0.35 5.92 -19.65 -0.12 -0.47 16 3 C -0.15 -3.62 9.22 22.36 0.21 -3.42 16 4 C 0.10 3.07 6.63 42.29 0.28 3.35 16 5 C 0.56 19.98 7.66 86.91 0.67 20.65 16 6 O -0.57 -23.30 15.68 -3.72 -0.06 -23.36 16 7 N -0.58 -20.55 2.88 -818.87 -2.36 -22.91 16 8 C 0.08 2.52 8.02 127.77 1.02 3.54 16 9 C 0.14 5.58 3.36 46.18 0.16 5.73 16 10 H 0.09 3.98 6.99 -2.39 -0.02 3.97 16 11 C -0.13 -5.41 6.59 31.99 0.21 -5.19 16 12 C 0.16 8.18 5.89 86.86 0.51 8.69 16 13 N -0.62 -33.77 3.39 -691.97 -2.35 -36.12 16 14 C -0.24 -14.13 10.27 84.03 0.86 -13.26 16 15 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 16 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 17 N -0.95 -57.22 10.09 21.65 0.22 -57.00 16 18 Si 0.98 46.38 29.55 68.60 2.03 48.40 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 C 0.13 6.14 6.88 86.73 0.60 6.74 16 23 N -0.45 -12.11 5.96 -177.77 -1.06 -13.17 16 24 C 0.10 2.13 6.61 40.48 0.27 2.40 16 25 C -0.11 -1.78 9.99 22.38 0.22 -1.56 16 26 C -0.09 -0.94 9.94 22.04 0.22 -0.73 16 27 C -0.10 -0.81 9.96 22.07 0.22 -0.59 16 28 C -0.10 -1.09 9.31 22.31 0.21 -0.88 16 29 C -0.10 -1.79 5.75 -21.22 -0.12 -1.91 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.45 6.51 -2.38 -0.02 0.43 16 32 H 0.08 0.71 8.10 -2.39 -0.02 0.69 16 33 H 0.15 3.49 7.62 -2.91 -0.02 3.47 16 34 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.06 1.97 6.14 -2.39 -0.01 1.96 16 36 H 0.12 3.22 5.28 -2.83 -0.01 3.21 16 37 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.08 3.03 6.15 -2.39 -0.01 3.02 16 39 H 0.08 4.76 5.87 -2.38 -0.01 4.74 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.04 1.60 7.08 -2.39 -0.02 1.58 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 46 H 0.16 0.19 8.06 -2.91 -0.02 0.16 16 47 H 0.16 0.68 6.44 -2.91 -0.02 0.66 16 Total: -1.00 -75.06 373.09 3.97 -71.09 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.99 Total: 13.53 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 6.56 Total: 19.54 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -5.55 Total: -129.20 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.06 3.97 -71.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033200197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.645 kcal (2) G-P(sol) polarization free energy of solvation -75.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds