Wall clock time and date at job start Tue Mar 31 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39436 * 119.54735 * 2 1 4 4 C 1.35991 * 121.09072 * 179.97438 * 3 2 1 5 5 C 1.40820 * 119.73787 * 0.09782 * 4 3 2 6 6 N 1.33267 * 120.99963 * 179.91228 * 5 4 3 7 7 C 1.31883 * 121.30103 * 180.02562 * 6 5 4 8 8 C 1.48274 * 119.24103 * 179.97438 * 7 6 5 9 9 O 1.21497 * 120.00319 * 173.21438 * 8 7 6 10 10 N 1.34774 * 119.99912 * 353.22189 * 8 7 6 11 11 C 1.46500 * 120.00147 * 2.21148 * 10 8 7 12 12 C 1.46501 * 120.00288 * 182.21782 * 10 8 7 13 13 H 1.08999 * 110.63809 * 358.30776 * 12 10 8 14 14 C 1.55157 * 110.71996 * 234.97488 * 12 10 8 15 15 C 1.54911 * 101.58010 * 277.13454 * 14 12 10 16 16 N 1.47426 * 104.83348 * 322.99060 * 15 14 12 17 17 C 1.36934 * 125.64999 * 204.08917 * 16 15 14 18 18 H 1.08000 * 120.00046 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99881 * 0.04457 * 17 16 15 20 20 N 1.31620 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99869 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47059 * 90.00000 * 21 19 17 23 23 H 1.48495 * 109.47299 * 210.00069 * 21 19 17 24 24 H 1.48503 * 109.47396 * 330.00105 * 21 19 17 25 25 C 1.47018 * 108.70205 * 24.12808 * 16 15 14 26 26 C 1.40273 * 121.52427 * 0.25238 * 7 6 5 27 27 C 1.36512 * 119.81271 * 359.46570 * 26 7 6 28 28 C 1.40753 * 118.24073 * 0.53748 * 27 26 7 29 29 C 1.36136 * 119.54370 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47460 * 269.97725 * 1 2 3 31 31 H 1.09007 * 109.46701 * 29.97691 * 1 2 3 32 32 H 1.08995 * 109.47210 * 149.97146 * 1 2 3 33 33 H 1.08004 * 119.45383 * 0.02918 * 3 2 1 34 34 H 1.07999 * 120.13183 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.46860 * 83.87864 * 11 10 8 36 36 H 1.08997 * 109.47574 * 203.87648 * 11 10 8 37 37 H 1.09007 * 109.47174 * 323.88383 * 11 10 8 38 38 H 1.08998 * 111.00720 * 35.20590 * 14 12 10 39 39 H 1.09000 * 111.00574 * 159.06184 * 14 12 10 40 40 H 1.09002 * 110.36958 * 204.15301 * 15 14 12 41 41 H 1.09001 * 110.46075 * 81.88027 * 15 14 12 42 42 H 0.97000 * 119.99568 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.88380 * 239.52280 * 25 16 15 44 44 H 1.09008 * 109.88628 * 118.35671 * 25 16 15 45 45 H 1.08002 * 120.09411 * 179.71750 * 26 7 6 46 46 H 1.08002 * 120.88202 * 180.22885 * 27 26 7 47 47 H 1.07995 * 120.17458 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5540 1.2496 0.0005 5 6 4.2852 0.0462 -0.0010 6 7 5.6178 0.0527 -0.0023 7 6 6.3086 -1.0708 -0.0042 8 6 7.7901 -1.0102 -0.0062 9 8 8.4399 -2.0294 0.1163 10 7 8.4158 0.1755 -0.1437 11 6 7.6329 1.4098 -0.2426 12 6 9.8789 0.2302 -0.1945 13 1 10.3049 -0.7664 -0.0781 14 6 10.4300 1.1967 0.8870 15 6 10.2879 2.5678 0.1802 16 7 10.6084 2.2987 -1.2334 17 6 11.0649 3.2202 -2.1376 18 1 11.2712 2.9222 -3.1550 19 6 11.2630 4.5373 -1.7465 20 7 11.0125 4.9003 -0.5063 21 14 11.8864 5.7941 -2.9797 22 1 10.7324 6.4315 -3.6632 23 1 12.6774 6.8324 -2.2716 24 1 12.7451 5.1177 -3.9849 25 6 10.3559 0.8774 -1.5118 26 6 5.6741 -2.3218 -0.0103 27 6 4.3107 -2.3914 -0.0033 28 6 3.5824 -1.1870 -0.0017 29 6 2.1782 -1.1844 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6383 2.1388 0.0005 34 1 4.0708 2.1980 0.0009 35 1 7.3776 1.7592 0.7578 36 1 8.2197 2.1723 -0.7549 37 1 6.7189 1.2164 -0.8042 38 1 9.8225 1.1585 1.7912 39 1 11.4743 0.9786 1.1103 40 1 10.9933 3.2855 0.5991 41 1 9.2680 2.9407 0.2737 42 1 11.1506 5.8207 -0.2332 43 1 11.2741 0.3970 -1.8496 44 1 9.5823 0.7805 -2.2737 45 1 6.2625 -3.2274 -0.0164 46 1 3.8043 -3.3453 -0.0041 47 1 1.6337 -2.1170 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033252945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:17 Heat of formation + Delta-G solvation = 76.506844 kcal Electronic energy + Delta-G solvation = -29194.383665 eV Core-core repulsion = 25343.933479 eV Total energy + Delta-G solvation = -3850.450186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26815 -39.71730 -37.82367 -37.08849 -34.57410 -33.66361 -32.53627 -31.76049 -30.48624 -29.24112 -28.07866 -27.54886 -26.00544 -24.68347 -24.18257 -23.35936 -22.35808 -21.02116 -20.13365 -18.92759 -18.18056 -17.44155 -17.05896 -16.83767 -16.08688 -15.49452 -15.42162 -14.72255 -14.61042 -14.51917 -14.39334 -14.07314 -13.73962 -13.59648 -13.57049 -13.40775 -12.87754 -12.76513 -12.56021 -12.10976 -11.98334 -11.81066 -11.74459 -11.55652 -11.49741 -11.39638 -11.03627 -10.88269 -10.82328 -10.71982 -10.29976 -10.10660 -10.01162 -9.84029 -9.52769 -8.99207 -8.94096 -8.61133 -8.43608 -8.15124 -6.82879 -5.64644 -3.06487 0.01150 0.47573 1.71838 2.30951 3.17636 3.20568 3.40479 3.45859 3.47552 3.91563 3.96459 4.28806 4.43668 4.47002 4.49999 4.63421 4.73766 4.84207 5.00043 5.16849 5.19315 5.23176 5.44318 5.47250 5.50332 5.52475 5.52693 5.70356 5.74649 5.77552 5.84288 5.91842 5.97108 6.04295 6.18504 6.22301 6.26971 6.34930 6.41570 6.53824 6.60792 6.66025 6.70487 6.80641 7.06812 7.51587 7.54123 7.63461 7.75271 7.87123 8.34723 8.37154 9.22472 9.82913 10.47718 11.38764 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002890 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.114554 B = 9687.882381 C =11129.413695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.105 4.105 4 C -0.077 4.077 5 C 0.113 3.887 6 N -0.425 5.425 7 C 0.120 3.880 8 C 0.559 3.441 9 O -0.546 6.546 10 N -0.566 5.566 11 C 0.064 3.936 12 C 0.122 3.878 13 H 0.101 0.899 14 C -0.153 4.153 15 C 0.144 3.856 16 N -0.602 5.602 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.128 3.872 26 C -0.121 4.121 27 C -0.068 4.068 28 C -0.084 4.084 29 C -0.107 4.107 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.025 0.975 42 H 0.252 0.748 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.777 -11.813 3.283 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.076 4.076 3 C -0.125 4.125 4 C -0.096 4.096 5 C -0.010 4.010 6 N -0.137 5.137 7 C -0.033 4.033 8 C 0.345 3.655 9 O -0.425 6.425 10 N -0.295 5.295 11 C -0.078 4.078 12 C 0.018 3.982 13 H 0.118 0.882 14 C -0.192 4.192 15 C 0.019 3.981 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.001 3.999 26 C -0.142 4.142 27 C -0.094 4.094 28 C -0.086 4.086 29 C -0.126 4.126 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.966 -11.235 3.325 23.150 hybrid contribution -0.183 -0.039 -0.626 0.653 sum -20.150 -11.274 2.699 23.246 Atomic orbital electron populations 1.20859 0.90763 1.03116 1.02617 1.19758 0.96513 0.93024 0.98319 1.20834 0.94006 0.97856 0.99813 1.20936 0.93569 0.97111 0.97955 1.19078 0.89487 0.92953 0.99499 1.68613 1.06599 1.28613 1.09916 1.21466 0.94615 0.89504 0.97700 1.17961 0.85611 0.83893 0.78013 1.90734 1.65830 1.34088 1.51800 1.47763 1.07125 1.06823 1.67821 1.22724 0.96813 0.85962 1.02352 1.22257 0.78139 1.00419 0.97349 0.88150 1.23338 1.00151 0.98828 0.96926 1.22153 1.00269 0.92220 0.83425 1.44537 1.77198 1.03170 1.07994 1.19066 1.35995 0.88478 0.91390 0.90543 1.24769 1.01952 0.97118 0.96748 1.69802 1.54957 1.16804 1.15436 0.86080 0.78312 0.81195 0.79951 1.21684 1.21704 1.20763 1.21632 0.97348 0.87041 0.93867 1.21733 0.95036 0.98839 0.98589 1.21417 0.93665 0.97721 0.96573 1.18950 0.94767 0.94047 1.00823 1.20815 0.92145 0.98246 1.01359 0.90831 0.91180 0.91349 0.85094 0.84072 0.92999 0.88666 0.88630 0.92015 0.90943 0.87670 0.95770 0.93765 0.94828 0.95530 0.83267 0.83860 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.98 36.00 0.36 -0.23 16 2 C -0.08 -0.60 5.85 -104.93 -0.61 -1.21 16 3 C -0.11 -0.90 9.58 -39.94 -0.38 -1.28 16 4 C -0.08 -0.83 9.99 -39.41 -0.39 -1.23 16 5 C 0.11 1.44 6.61 -84.85 -0.56 0.88 16 6 N -0.43 -6.29 5.94 -7.54 -0.04 -6.33 16 7 C 0.12 1.83 6.64 -82.95 -0.55 1.28 16 8 C 0.56 9.94 7.66 -12.13 -0.09 9.85 16 9 O -0.55 -10.62 15.67 5.37 0.08 -10.54 16 10 N -0.57 -10.41 2.82 -172.78 -0.49 -10.89 16 11 C 0.06 1.14 7.57 59.85 0.45 1.59 16 12 C 0.12 2.36 3.58 -66.09 -0.24 2.12 16 13 H 0.10 1.92 6.99 -51.93 -0.36 1.55 16 14 C -0.15 -3.03 6.53 -24.58 -0.16 -3.19 16 15 C 0.14 3.42 4.99 -2.53 -0.01 3.41 16 16 N -0.60 -15.21 2.97 -170.07 -0.51 -15.71 16 17 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.37 10.09 55.49 0.56 -25.81 16 21 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.13 2.77 6.30 -3.07 -0.02 2.75 16 26 C -0.12 -1.50 9.54 -39.44 -0.38 -1.88 16 27 C -0.07 -0.68 9.88 -39.25 -0.39 -1.07 16 28 C -0.08 -0.92 5.75 -106.71 -0.61 -1.53 16 29 C -0.11 -0.91 9.37 -39.52 -0.37 -1.28 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.30 8.08 -51.92 -0.42 -0.12 16 32 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 2.00 4.74 -51.93 -0.25 1.75 16 37 H 0.10 1.62 5.22 -52.74 -0.28 1.34 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.11 2.85 5.87 -51.93 -0.30 2.54 16 41 H 0.02 0.60 5.54 -51.93 -0.29 0.31 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.59 8.04 -51.92 -0.42 0.17 16 45 H 0.15 1.71 7.62 -52.49 -0.40 1.31 16 46 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -31.65 373.21 -10.49 -42.14 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.48 Total: 2.24 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -4.21 Total: 2.36 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.48 Total: -58.74 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.65 -10.49 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033252945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.646 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds