Wall clock time and date at job start Tue Mar 31 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39436 * 119.54735 * 2 1 4 4 C 1.35991 * 121.09072 * 179.97438 * 3 2 1 5 5 C 1.40820 * 119.73787 * 0.09782 * 4 3 2 6 6 N 1.33267 * 120.99963 * 179.91228 * 5 4 3 7 7 C 1.31883 * 121.30103 * 180.02562 * 6 5 4 8 8 C 1.48274 * 119.24103 * 179.97438 * 7 6 5 9 9 O 1.21497 * 120.00319 * 173.21438 * 8 7 6 10 10 N 1.34774 * 119.99912 * 353.22189 * 8 7 6 11 11 C 1.46500 * 120.00147 * 2.21148 * 10 8 7 12 12 C 1.46501 * 120.00288 * 182.21782 * 10 8 7 13 13 H 1.08999 * 110.63809 * 358.30776 * 12 10 8 14 14 C 1.55157 * 110.71996 * 234.97488 * 12 10 8 15 15 C 1.54911 * 101.58010 * 277.13454 * 14 12 10 16 16 N 1.47426 * 104.83348 * 322.99060 * 15 14 12 17 17 C 1.36934 * 125.64999 * 204.08917 * 16 15 14 18 18 H 1.08000 * 120.00046 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99881 * 0.04457 * 17 16 15 20 20 N 1.31620 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99869 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47059 * 90.00000 * 21 19 17 23 23 H 1.48495 * 109.47299 * 210.00069 * 21 19 17 24 24 H 1.48503 * 109.47396 * 330.00105 * 21 19 17 25 25 C 1.47018 * 108.70205 * 24.12808 * 16 15 14 26 26 C 1.40273 * 121.52427 * 0.25238 * 7 6 5 27 27 C 1.36512 * 119.81271 * 359.46570 * 26 7 6 28 28 C 1.40753 * 118.24073 * 0.53748 * 27 26 7 29 29 C 1.36136 * 119.54370 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47460 * 269.97725 * 1 2 3 31 31 H 1.09007 * 109.46701 * 29.97691 * 1 2 3 32 32 H 1.08995 * 109.47210 * 149.97146 * 1 2 3 33 33 H 1.08004 * 119.45383 * 0.02918 * 3 2 1 34 34 H 1.07999 * 120.13183 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.46860 * 83.87864 * 11 10 8 36 36 H 1.08997 * 109.47574 * 203.87648 * 11 10 8 37 37 H 1.09007 * 109.47174 * 323.88383 * 11 10 8 38 38 H 1.08998 * 111.00720 * 35.20590 * 14 12 10 39 39 H 1.09000 * 111.00574 * 159.06184 * 14 12 10 40 40 H 1.09002 * 110.36958 * 204.15301 * 15 14 12 41 41 H 1.09001 * 110.46075 * 81.88027 * 15 14 12 42 42 H 0.97000 * 119.99568 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.88380 * 239.52280 * 25 16 15 44 44 H 1.09008 * 109.88628 * 118.35671 * 25 16 15 45 45 H 1.08002 * 120.09411 * 179.71750 * 26 7 6 46 46 H 1.08002 * 120.88202 * 180.22885 * 27 26 7 47 47 H 1.07995 * 120.17458 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5540 1.2496 0.0005 5 6 4.2852 0.0462 -0.0010 6 7 5.6178 0.0527 -0.0023 7 6 6.3086 -1.0708 -0.0042 8 6 7.7901 -1.0102 -0.0062 9 8 8.4399 -2.0294 0.1163 10 7 8.4158 0.1755 -0.1437 11 6 7.6329 1.4098 -0.2426 12 6 9.8789 0.2302 -0.1945 13 1 10.3049 -0.7664 -0.0781 14 6 10.4300 1.1967 0.8870 15 6 10.2879 2.5678 0.1802 16 7 10.6084 2.2987 -1.2334 17 6 11.0649 3.2202 -2.1376 18 1 11.2712 2.9222 -3.1550 19 6 11.2630 4.5373 -1.7465 20 7 11.0125 4.9003 -0.5063 21 14 11.8864 5.7941 -2.9797 22 1 10.7324 6.4315 -3.6632 23 1 12.6774 6.8324 -2.2716 24 1 12.7451 5.1177 -3.9849 25 6 10.3559 0.8774 -1.5118 26 6 5.6741 -2.3218 -0.0103 27 6 4.3107 -2.3914 -0.0033 28 6 3.5824 -1.1870 -0.0017 29 6 2.1782 -1.1844 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6383 2.1388 0.0005 34 1 4.0708 2.1980 0.0009 35 1 7.3776 1.7592 0.7578 36 1 8.2197 2.1723 -0.7549 37 1 6.7189 1.2164 -0.8042 38 1 9.8225 1.1585 1.7912 39 1 11.4743 0.9786 1.1103 40 1 10.9933 3.2855 0.5991 41 1 9.2680 2.9407 0.2737 42 1 11.1506 5.8207 -0.2332 43 1 11.2741 0.3970 -1.8496 44 1 9.5823 0.7805 -2.2737 45 1 6.2625 -3.2274 -0.0164 46 1 3.8043 -3.3453 -0.0041 47 1 1.6337 -2.1170 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033252945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:16 Heat of formation + Delta-G solvation = 59.890056 kcal Electronic energy + Delta-G solvation = -29195.104223 eV Core-core repulsion = 25343.933479 eV Total energy + Delta-G solvation = -3851.170744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.23790 -41.02698 -39.21253 -38.19782 -36.12450 -34.68303 -33.96479 -32.95997 -31.28342 -31.08924 -29.70072 -28.46806 -27.56840 -26.29698 -25.23515 -24.39471 -23.15359 -22.28064 -22.04582 -20.39650 -19.07781 -18.95920 -18.60920 -17.90054 -17.46428 -16.73888 -16.69796 -16.48193 -15.72134 -15.61899 -15.39310 -15.33518 -15.02823 -14.58365 -14.48399 -14.40288 -14.12236 -13.97890 -13.82767 -13.62515 -13.36409 -13.30806 -13.00018 -12.94333 -12.78604 -12.49191 -12.44761 -12.29822 -12.15718 -12.04291 -11.96739 -11.82027 -11.60978 -11.43768 -11.35046 -10.71500 -10.15831 -9.83959 -9.59540 -9.18713 -8.88112 -7.75768 -5.20328 -0.86139 -0.35442 0.89885 1.33581 1.47860 1.49095 1.57922 1.82486 2.13469 2.50164 2.88017 3.04002 3.34220 3.48680 3.59010 3.68802 3.77293 3.81333 3.85292 3.96737 4.00615 4.16761 4.25421 4.33777 4.39115 4.44865 4.62065 4.66641 4.67847 4.74336 4.78501 4.86653 4.89780 4.90610 4.98883 5.01361 5.06018 5.06966 5.20381 5.23058 5.32200 5.45258 5.49522 5.53940 5.57146 5.65474 5.82105 5.87054 6.28432 6.31201 6.58079 6.97639 7.11696 7.77044 8.41620 9.25547 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002890 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.114554 B = 9687.882381 C =11129.413695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.094 4.094 4 C -0.104 4.104 5 C 0.088 3.912 6 N -0.448 5.448 7 C 0.093 3.907 8 C 0.560 3.440 9 O -0.567 6.567 10 N -0.574 5.574 11 C 0.084 3.916 12 C 0.133 3.867 13 H 0.109 0.891 14 C -0.138 4.138 15 C 0.152 3.848 16 N -0.618 5.618 17 C -0.238 4.238 18 H 0.077 0.923 19 C -0.062 4.062 20 N -0.945 5.945 21 Si 0.979 3.021 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.130 3.870 26 C -0.136 4.136 27 C -0.048 4.048 28 C -0.093 4.093 29 C -0.105 4.105 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.012 0.988 42 H 0.247 0.753 43 H 0.039 0.961 44 H 0.020 0.980 45 H 0.154 0.846 46 H 0.186 0.814 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.952 -13.286 3.070 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.122 4.122 5 C -0.035 4.035 6 N -0.161 5.161 7 C -0.058 4.058 8 C 0.348 3.652 9 O -0.446 6.446 10 N -0.303 5.303 11 C -0.058 4.058 12 C 0.029 3.971 13 H 0.127 0.873 14 C -0.177 4.177 15 C 0.027 3.973 16 N -0.344 5.344 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.808 3.192 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.198 1.198 25 C 0.003 3.997 26 C -0.156 4.156 27 C -0.073 4.073 28 C -0.095 4.095 29 C -0.124 4.124 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.153 0.847 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.172 0.828 46 H 0.204 0.796 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.149 -12.734 3.107 26.602 hybrid contribution 0.567 0.422 -0.558 0.900 sum -22.582 -12.312 2.549 25.847 Atomic orbital electron populations 1.20933 0.88242 1.04351 1.03660 1.20184 0.98295 0.92440 0.96450 1.21201 0.93161 0.99549 0.97453 1.21036 0.94692 0.96495 0.99990 1.19405 0.88903 0.94673 1.00560 1.68341 1.08068 1.28933 1.10714 1.21170 0.93000 0.91008 1.00659 1.18389 0.87004 0.83036 0.76814 1.90699 1.66796 1.34497 1.52636 1.47780 1.06607 1.07341 1.68573 1.22494 0.96365 0.84951 1.02032 1.22055 0.79179 1.00220 0.95661 0.87308 1.23187 1.01032 0.96382 0.97141 1.21910 0.98472 0.93626 0.83267 1.44731 1.77096 1.04293 1.08322 1.19385 1.35974 0.89366 0.91974 0.90480 1.25564 1.02511 0.98836 0.98526 1.70039 1.55740 1.16719 1.16908 0.85068 0.77674 0.78586 0.77905 1.21388 1.21920 1.19762 1.21686 0.97341 0.85583 0.95056 1.21793 0.96270 0.97698 0.99878 1.21853 0.92577 0.99153 0.93719 1.19250 0.96144 0.93561 1.00503 1.21190 0.90975 0.99993 1.00221 0.89692 0.90281 0.89916 0.82695 0.84690 0.92995 0.91978 0.87654 0.90636 0.90140 0.90939 0.97006 0.94287 0.94328 0.96183 0.82804 0.79631 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 9.98 71.23 0.71 0.06 16 2 C -0.07 -0.90 5.85 -20.07 -0.12 -1.01 16 3 C -0.09 -1.39 9.58 22.04 0.21 -1.18 16 4 C -0.10 -2.20 9.99 22.38 0.22 -1.97 16 5 C 0.09 2.22 6.61 40.47 0.27 2.48 16 6 N -0.45 -13.55 5.94 -177.77 -1.06 -14.60 16 7 C 0.09 2.88 6.64 42.30 0.28 3.16 16 8 C 0.56 20.33 7.66 86.91 0.67 20.99 16 9 O -0.57 -22.28 15.67 -3.70 -0.06 -22.34 16 10 N -0.57 -21.71 2.82 -818.87 -2.31 -24.02 16 11 C 0.08 3.15 7.57 127.77 0.97 4.12 16 12 C 0.13 5.24 3.58 46.18 0.17 5.40 16 13 H 0.11 4.16 6.99 -2.39 -0.02 4.14 16 14 C -0.14 -5.57 6.53 31.99 0.21 -5.36 16 15 C 0.15 7.52 4.99 86.86 0.43 7.96 16 16 N -0.62 -32.25 2.97 -691.97 -2.06 -34.31 16 17 C -0.24 -13.46 10.27 84.04 0.86 -12.60 16 18 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 20 N -0.94 -55.82 10.09 21.65 0.22 -55.60 16 21 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.13 5.77 6.30 86.73 0.55 6.31 16 26 C -0.14 -3.24 9.54 22.36 0.21 -3.03 16 27 C -0.05 -0.82 9.88 22.48 0.22 -0.60 16 28 C -0.09 -1.81 5.75 -21.22 -0.12 -1.94 16 29 C -0.11 -1.38 9.37 22.31 0.21 -1.17 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.34 8.08 -2.38 -0.02 0.33 16 32 H 0.08 0.28 8.07 -2.39 -0.02 0.26 16 33 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.75 4.74 -2.39 -0.01 2.74 16 37 H 0.11 3.77 5.22 -3.99 -0.02 3.75 16 38 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.07 4.10 5.87 -2.39 -0.01 4.09 16 41 H 0.01 0.63 5.54 -2.39 -0.01 0.61 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.02 0.92 8.04 -2.38 -0.02 0.90 16 45 H 0.15 3.41 7.62 -2.91 -0.02 3.39 16 46 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -71.16 373.21 4.16 -67.00 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.98 Total: 17.36 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.42 Total: 18.61 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -5.21 Total: -128.53 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.16 4.16 -67.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033252945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.891 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds