Wall clock time and date at job start Tue Mar 31 2020 22:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36349 * 119.95926 * 2 1 4 4 C 1.38877 * 121.06201 * 179.97438 * 3 2 1 5 5 C 1.38745 * 120.72107 * 0.02562 * 4 3 2 6 6 C 1.47433 * 120.33285 * 179.97438 * 5 4 3 7 7 O 1.21603 * 120.00519 * 222.68106 * 6 5 4 8 8 N 1.34777 * 119.99485 * 42.67744 * 6 5 4 9 9 C 1.46501 * 120.00397 * 5.80968 * 8 6 5 10 10 C 1.46509 * 119.99682 * 185.80395 * 8 6 5 11 11 H 1.09005 * 110.88628 * 3.88569 * 10 8 6 12 12 C 1.55158 * 111.00639 * 240.00323 * 10 8 6 13 13 C 1.54319 * 102.94058 * 206.38749 * 12 10 8 14 14 N 1.47027 * 107.27334 * 22.19275 * 13 12 10 15 15 C 1.36933 * 125.64909 * 181.02080 * 14 13 12 16 16 H 1.08002 * 120.00135 * 172.81108 * 15 14 13 17 17 C 1.38809 * 120.00181 * 352.81291 * 15 14 13 18 18 N 1.31618 * 120.00573 * 162.20743 * 17 15 14 19 19 Si 1.86806 * 119.99979 * 341.93099 * 17 15 14 20 20 H 1.48492 * 109.47343 * 186.15928 * 19 17 15 21 21 H 1.48499 * 109.47356 * 306.16649 * 19 17 15 22 22 H 1.48507 * 109.46627 * 66.16155 * 19 17 15 23 23 C 1.47428 * 108.70234 * 1.28739 * 14 13 12 24 24 C 1.41780 * 119.33645 * 0.27629 * 5 4 3 25 25 N 1.33345 * 121.04555 * 180.25400 * 24 5 4 26 26 C 1.31234 * 121.35385 * 179.73723 * 25 24 5 27 27 C 1.39227 * 121.69130 * 359.71131 * 26 25 24 28 28 C 1.36629 * 119.91410 * 0.02562 * 27 26 25 29 29 C 1.40445 * 119.95985 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46966 * 89.99943 * 1 2 3 31 31 H 1.09009 * 109.47235 * 210.00147 * 1 2 3 32 32 H 1.09001 * 109.47015 * 329.99493 * 1 2 3 33 33 H 1.07997 * 119.46982 * 359.97438 * 3 2 1 34 34 H 1.07994 * 119.64137 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.47009 * 274.46823 * 9 8 6 36 36 H 1.08997 * 109.46997 * 34.46779 * 9 8 6 37 37 H 1.08995 * 109.46862 * 154.46881 * 9 8 6 38 38 H 1.08996 * 110.71785 * 88.02619 * 12 10 8 39 39 H 1.09003 * 110.87033 * 324.81954 * 12 10 8 40 40 H 1.08998 * 109.88507 * 262.77082 * 13 12 10 41 41 H 1.08998 * 110.00876 * 141.68111 * 13 12 10 42 42 H 0.97005 * 119.99513 * 354.66025 * 18 17 15 43 43 H 1.08997 * 110.36568 * 94.48359 * 23 14 13 44 44 H 1.08999 * 110.36460 * 216.80640 * 23 14 13 45 45 H 1.07999 * 119.15371 * 179.72357 * 26 25 24 46 46 H 1.08003 * 120.04537 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.92533 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1878 1.1813 0.0000 4 6 3.5764 1.2080 0.0005 5 6 4.3080 0.0292 0.0005 6 6 5.7818 0.0675 0.0005 7 8 6.4099 -0.6906 -0.7133 8 7 6.4330 0.9429 0.7918 9 6 5.6844 1.7670 1.7440 10 6 7.8897 1.0703 0.6997 11 1 8.2850 0.4419 -0.0985 12 6 8.5641 0.7359 2.0564 13 6 9.8796 1.5404 1.9960 14 7 9.6831 2.6260 1.0241 15 6 10.6225 3.5555 0.6650 16 1 10.4205 4.2431 -0.1429 17 6 11.8343 3.6139 1.3395 18 7 12.8585 4.2397 0.7996 19 14 12.0092 2.8109 3.0171 20 1 13.3406 3.1393 3.5867 21 1 10.9454 3.3167 3.9214 22 1 11.8804 1.3381 2.8766 23 6 8.3053 2.5521 0.5049 24 6 3.6241 -1.2128 -0.0060 25 7 4.2931 -2.3663 -0.0011 26 6 3.6663 -3.5192 -0.0019 27 6 2.2761 -3.5959 -0.0019 28 6 1.5305 -2.4510 -0.0016 29 6 2.2083 -1.2168 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6386 2.1112 -0.0004 34 1 4.0923 2.1568 0.0009 35 1 5.3218 2.6638 1.2417 36 1 4.8378 1.1988 2.1292 37 1 6.3368 2.0516 2.5695 38 1 8.7683 -0.3320 2.1327 39 1 7.9460 1.0695 2.8900 40 1 10.6947 0.8943 1.6702 41 1 10.1070 1.9578 2.9769 42 1 12.7910 4.5929 -0.1014 43 1 7.6495 3.2105 1.0745 44 1 8.2837 2.8159 -0.5525 45 1 4.2436 -4.4320 -0.0024 46 1 1.7877 -4.5592 -0.0022 47 1 0.4513 -2.4915 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033277457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:29 Heat of formation + Delta-G solvation = 71.243066 kcal Electronic energy + Delta-G solvation = -29229.426550 eV Core-core repulsion = 25378.748110 eV Total energy + Delta-G solvation = -3850.678440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39267 -39.73608 -37.72080 -37.40927 -34.99033 -34.34776 -32.34593 -31.47106 -30.92079 -29.57857 -28.51244 -27.58109 -26.75379 -24.61206 -24.10079 -23.74511 -22.38539 -20.86786 -20.24899 -19.11692 -18.64292 -17.49313 -17.44600 -17.34235 -16.56327 -15.78568 -15.37888 -15.05055 -14.97379 -14.59358 -14.42747 -14.23745 -13.90190 -13.71341 -13.55785 -13.51847 -13.22505 -12.98664 -12.73993 -12.53385 -12.47166 -12.30166 -12.20455 -12.10071 -11.67289 -11.48640 -11.37442 -11.03967 -10.94397 -10.71809 -10.51667 -9.99578 -9.89608 -9.45524 -9.36203 -9.12837 -8.99316 -8.69465 -8.47305 -8.35340 -7.03086 -6.28914 -3.18223 -0.12091 0.49617 1.48517 2.45362 2.90789 3.09644 3.46211 3.52128 3.74601 3.81849 3.97747 4.11796 4.33299 4.39671 4.43474 4.56278 4.65909 4.67216 4.88736 4.97899 5.02311 5.03500 5.09023 5.14945 5.23556 5.26331 5.30064 5.41641 5.46339 5.50066 5.55608 5.58521 5.63195 5.66683 5.72483 5.87444 5.92081 5.92855 6.01731 6.16190 6.25787 6.40073 6.45551 6.47493 6.58684 6.79608 6.82573 7.50159 7.67130 7.72420 8.31509 8.35880 9.06450 9.58293 10.24069 11.21616 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.002637 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.472894 B =10616.994848 C =11215.580835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.045 4.045 3 C -0.126 4.126 4 C -0.061 4.061 5 C -0.105 4.105 6 C 0.564 3.436 7 O -0.510 6.510 8 N -0.601 5.601 9 C 0.074 3.926 10 C 0.127 3.873 11 H 0.111 0.889 12 C -0.138 4.138 13 C 0.113 3.887 14 N -0.610 5.610 15 C -0.322 4.322 16 H 0.079 0.921 17 C -0.021 4.021 18 N -0.926 5.926 19 Si 1.066 2.934 20 H -0.302 1.302 21 H -0.299 1.299 22 H -0.284 1.284 23 C 0.132 3.868 24 C 0.165 3.835 25 N -0.452 5.452 26 C 0.134 3.866 27 C -0.176 4.176 28 C -0.059 4.059 29 C -0.107 4.107 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.027 0.973 44 H 0.047 0.953 45 H 0.160 0.840 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.685 -12.196 1.273 33.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.046 4.046 3 C -0.144 4.144 4 C -0.081 4.081 5 C -0.109 4.109 6 C 0.351 3.649 7 O -0.385 6.385 8 N -0.334 5.334 9 C -0.069 4.069 10 C 0.023 3.977 11 H 0.129 0.871 12 C -0.177 4.177 13 C -0.012 4.012 14 N -0.338 5.338 15 C -0.449 4.449 16 H 0.097 0.903 17 C -0.220 4.220 18 N -0.567 5.567 19 Si 0.900 3.100 20 H -0.230 1.230 21 H -0.227 1.227 22 H -0.211 1.211 23 C 0.005 3.995 24 C 0.042 3.958 25 N -0.159 5.159 26 C -0.038 4.038 27 C -0.196 4.196 28 C -0.085 4.085 29 C -0.110 4.110 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.178 0.822 46 H 0.156 0.844 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -28.267 -12.601 2.109 31.020 hybrid contribution -2.090 0.293 -1.188 2.422 sum -30.357 -12.308 0.921 32.771 Atomic orbital electron populations 1.20912 0.90407 1.03441 1.02977 1.19860 0.96263 0.91943 0.96546 1.20726 0.93759 0.98036 1.01888 1.21604 0.94071 0.97780 0.94690 1.19814 0.93748 0.92064 1.05240 1.17904 0.86394 0.80158 0.80442 1.90806 1.67832 1.38892 1.40932 1.47651 1.07525 1.39708 1.38518 1.21922 0.96802 0.94814 0.93318 1.22460 0.77370 0.98980 0.98849 0.87117 1.22923 0.97260 1.00399 0.97107 1.21972 0.95642 0.90305 0.93292 1.44741 1.08879 1.32043 1.48144 1.20154 0.95109 1.12722 1.16926 0.90301 1.25792 0.91067 1.00236 1.04952 1.70897 1.29351 1.39742 1.16721 0.83920 0.73853 0.75851 0.76392 1.22978 1.22738 1.21148 1.21812 0.87381 0.92279 0.98040 1.18543 0.88957 0.91752 0.96544 1.68160 1.39444 0.97540 1.10737 1.23126 0.92006 0.96187 0.92491 1.21942 0.95583 0.99628 1.02483 1.21496 1.00453 0.91251 0.95308 1.18636 0.93621 0.94388 1.04314 0.90385 0.91062 0.90658 0.84763 0.84031 0.92352 0.91489 0.90207 0.90923 0.91253 0.93238 0.95233 0.92835 0.95530 0.93426 0.82242 0.84392 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.53 36.00 0.34 -0.20 16 2 C -0.05 -0.36 5.89 -104.47 -0.62 -0.97 16 3 C -0.13 -1.00 9.57 -40.03 -0.38 -1.38 16 4 C -0.06 -0.62 7.93 -39.16 -0.31 -0.93 16 5 C -0.10 -1.44 4.95 -104.61 -0.52 -1.95 16 6 C 0.56 9.48 7.06 -12.52 -0.09 9.39 16 7 O -0.51 -10.56 15.68 5.27 0.08 -10.48 16 8 N -0.60 -9.31 2.91 -172.60 -0.50 -9.81 16 9 C 0.07 0.86 7.55 59.85 0.45 1.31 16 10 C 0.13 2.34 3.45 -65.66 -0.23 2.11 16 11 H 0.11 2.28 7.05 -51.93 -0.37 1.91 16 12 C -0.14 -2.49 6.49 -24.90 -0.16 -2.65 16 13 C 0.11 2.54 4.61 -3.06 -0.01 2.53 16 14 N -0.61 -15.34 3.34 -169.93 -0.57 -15.91 16 15 C -0.32 -9.42 10.54 -15.06 -0.16 -9.57 16 16 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 17 C -0.02 -0.63 5.49 -17.43 -0.10 -0.73 16 18 N -0.93 -29.60 13.70 55.49 0.76 -28.84 16 19 Si 1.07 27.23 24.54 -169.99 -4.17 23.06 16 20 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.30 -7.31 6.88 56.52 0.39 -6.92 16 22 H -0.28 -6.68 5.36 56.52 0.30 -6.38 16 23 C 0.13 2.72 6.79 -2.41 -0.02 2.71 16 24 C 0.16 2.24 6.58 -84.58 -0.56 1.68 16 25 N -0.45 -6.58 9.21 -10.76 -0.10 -6.68 16 26 C 0.13 1.38 11.15 -17.44 -0.19 1.19 16 27 C -0.18 -1.32 10.03 -39.80 -0.40 -1.72 16 28 C -0.06 -0.45 9.36 -39.19 -0.37 -0.82 16 29 C -0.11 -1.09 5.74 -106.82 -0.61 -1.71 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.25 6.42 -51.92 -0.33 -0.09 16 32 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.14 1.24 6.01 -52.49 -0.32 0.92 16 35 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 36 H 0.07 0.67 6.73 -51.93 -0.35 0.32 16 37 H 0.08 0.94 6.38 -51.93 -0.33 0.61 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.11 6.46 -51.93 -0.34 0.78 16 40 H 0.05 1.18 6.64 -51.93 -0.34 0.83 16 41 H 0.03 0.69 4.04 -51.93 -0.21 0.48 16 42 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 43 H 0.03 0.52 6.98 -51.93 -0.36 0.16 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 46 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 47 H 0.14 0.61 6.42 -52.49 -0.34 0.27 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -37.78 364.69 -9.20 -46.98 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.27 Total: -2.12 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -3.92 Total: -1.70 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.41 Total: -61.24 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: -4.17 Total: 23.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.78 -9.20 -46.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033277457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.226 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds