Wall clock time and date at job start Tue Mar 31 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36539 * 120.09204 * 2 1 4 4 C 1.40719 * 118.24303 * 180.02562 * 3 2 1 5 5 C 1.40428 * 121.27504 * 180.27825 * 4 3 2 6 6 C 1.36132 * 119.64629 * 180.25202 * 5 4 3 7 7 C 1.39431 * 120.91738 * 359.48742 * 6 5 4 8 8 C 1.35995 * 121.09425 * 0.23746 * 7 6 5 9 9 C 1.40833 * 119.73544 * 0.02562 * 8 7 6 10 10 N 1.33234 * 121.00074 * 180.02562 * 9 8 7 11 11 C 1.31912 * 121.30194 * 180.02562 * 10 9 8 12 12 C 1.48276 * 119.24132 * 180.02562 * 11 10 9 13 13 O 1.21498 * 119.99830 * 103.99363 * 12 11 10 14 14 N 1.34776 * 119.99833 * 283.99387 * 12 11 10 15 15 C 1.46501 * 120.00084 * 5.08127 * 14 12 11 16 16 C 1.46496 * 119.99793 * 185.07933 * 14 12 11 17 17 H 1.08997 * 110.64592 * 1.68251 * 16 14 12 18 18 C 1.55159 * 110.72098 * 125.02549 * 16 14 12 19 19 C 1.54911 * 101.58249 * 153.85976 * 18 16 14 20 20 N 1.47419 * 104.83558 * 322.99142 * 19 18 16 21 21 C 1.36940 * 125.65132 * 204.09270 * 20 19 18 22 22 H 1.07994 * 119.99887 * 180.02562 * 21 20 19 23 23 C 1.38807 * 119.99646 * 0.03933 * 21 20 19 24 24 N 1.31620 * 120.00088 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00001 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47087 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46956 * 119.99888 * 25 23 21 28 28 H 1.48497 * 109.47251 * 240.00210 * 25 23 21 29 29 C 1.47026 * 108.70112 * 24.12404 * 20 19 18 30 30 H 1.09003 * 109.46719 * 85.34598 * 1 2 3 31 31 H 1.08998 * 109.47039 * 205.34088 * 1 2 3 32 32 H 1.09001 * 109.47299 * 325.34687 * 1 2 3 33 33 H 1.07997 * 120.87860 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.17814 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.54169 * 179.74872 * 6 5 4 36 36 H 1.07996 * 119.45780 * 180.26193 * 7 6 5 37 37 H 1.07999 * 120.13782 * 180.02562 * 8 7 6 38 38 H 1.08995 * 109.47745 * 84.82572 * 15 14 12 39 39 H 1.09001 * 109.47369 * 204.82751 * 15 14 12 40 40 H 1.09004 * 109.46811 * 324.82562 * 15 14 12 41 41 H 1.08999 * 111.00591 * 271.93994 * 18 16 14 42 42 H 1.09001 * 111.00025 * 35.78917 * 18 16 14 43 43 H 1.09003 * 110.36541 * 204.14917 * 19 18 16 44 44 H 1.09004 * 110.45294 * 81.87742 * 19 18 16 45 45 H 0.97002 * 119.99897 * 179.97438 * 24 23 21 46 46 H 1.08996 * 109.88176 * 239.52096 * 29 20 19 47 47 H 1.09004 * 109.87934 * 118.36051 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0006 5 6 4.3654 2.3120 0.0052 6 6 5.7242 2.2295 -0.0007 7 6 6.3668 0.9920 -0.0018 8 6 5.6569 -0.1679 -0.0017 9 6 4.2492 -0.1255 -0.0012 10 7 3.5289 -1.2463 -0.0006 11 6 2.2102 -1.2134 -0.0006 12 6 1.4538 -2.4887 0.0006 13 8 0.9252 -2.8805 1.0220 14 7 1.3528 -3.2133 -1.1313 15 6 2.0814 -2.7999 -2.3332 16 6 0.5145 -4.4144 -1.1598 17 1 0.0226 -4.5626 -0.1985 18 6 -0.5271 -4.3299 -2.3067 19 6 -0.7894 -5.8282 -2.5996 20 7 0.5220 -6.4807 -2.4331 21 6 0.9054 -7.6612 -3.0116 22 1 1.8925 -8.0579 -2.8260 23 6 0.0253 -8.3476 -3.8368 24 7 -1.1778 -7.8641 -4.0629 25 14 0.5479 -9.9583 -4.6255 26 1 1.9374 -10.2829 -4.2141 27 1 -0.3646 -11.0440 -4.1852 28 1 0.4863 -9.8287 -6.1035 29 6 1.3499 -5.6543 -1.5424 30 1 -0.3633 0.0834 -1.0243 31 1 -0.3633 -0.9288 0.4398 32 1 -0.3634 0.8454 0.5843 33 1 1.6675 2.1257 -0.0004 34 1 3.8802 3.2768 0.0098 35 1 6.3127 3.1350 -0.0003 36 1 7.4461 0.9540 -0.0022 37 1 6.1705 -1.1180 -0.0022 38 1 3.0980 -3.1909 -2.2944 39 1 1.5757 -3.1896 -3.2167 40 1 2.1124 -1.7114 -2.3828 41 1 -1.4371 -3.8320 -1.9721 42 1 -0.1076 -3.8288 -3.1791 43 1 -1.1507 -5.9577 -3.6198 44 1 -1.5086 -6.2351 -1.8887 45 1 -1.7927 -8.3436 -4.6398 46 1 2.2571 -5.3445 -2.0612 47 1 1.6074 -6.2188 -0.6462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033278757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:35 Heat of formation + Delta-G solvation = 38.168527 kcal Electronic energy + Delta-G solvation = -29114.232885 eV Core-core repulsion = 25262.120225 eV Total energy + Delta-G solvation = -3852.112660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.28011 -40.99437 -39.15207 -37.97477 -36.39919 -35.19997 -34.10382 -32.74005 -31.50763 -30.98021 -29.31754 -28.14214 -27.96221 -26.85645 -25.79110 -23.62849 -23.03172 -22.46232 -22.14047 -20.52383 -19.17222 -18.99608 -18.84891 -18.03435 -17.59024 -16.82312 -16.54119 -16.15058 -16.01509 -15.66813 -15.40839 -15.35657 -15.13285 -14.64767 -14.46923 -14.30386 -14.14181 -14.03136 -13.95556 -13.71678 -13.55007 -13.26688 -13.19944 -13.00923 -12.74631 -12.63339 -12.54784 -12.48876 -12.42155 -12.18163 -11.99504 -11.86301 -11.42818 -11.39485 -11.39231 -10.77989 -10.56919 -9.83969 -9.71241 -9.22353 -8.94180 -7.79808 -5.25478 -0.72365 -0.33410 0.96225 1.19699 1.46690 1.47928 1.57897 1.62932 1.86588 2.48398 2.90617 3.04598 3.30434 3.43042 3.61287 3.67392 3.68197 3.78923 3.80061 3.90126 4.06801 4.09155 4.14905 4.21574 4.34418 4.40086 4.43237 4.50973 4.52212 4.61766 4.69158 4.75744 4.78101 4.85043 4.91654 4.95298 5.01391 5.03999 5.07624 5.16097 5.39185 5.40123 5.43490 5.46976 5.51036 5.56496 5.75405 5.87820 6.14375 6.26963 6.64836 6.82284 7.07847 7.72417 8.36147 9.22221 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002533 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.228824 B =11053.135528 C =11884.207121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.121 4.121 3 C -0.044 4.044 4 C -0.102 4.102 5 C -0.097 4.097 6 C -0.107 4.107 7 C -0.091 4.091 8 C -0.115 4.115 9 C 0.096 3.904 10 N -0.472 5.472 11 C 0.116 3.884 12 C 0.578 3.422 13 O -0.567 6.567 14 N -0.583 5.583 15 C 0.086 3.914 16 C 0.140 3.860 17 H 0.091 0.909 18 C -0.131 4.131 19 C 0.156 3.844 20 N -0.621 5.621 21 C -0.240 4.240 22 H 0.078 0.922 23 C -0.063 4.063 24 N -0.947 5.947 25 Si 0.982 3.018 26 H -0.270 1.270 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.131 3.869 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.187 0.813 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.084 0.916 44 H -0.010 1.010 45 H 0.249 0.751 46 H 0.036 0.964 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.092 28.510 5.390 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.124 4.124 3 C -0.070 4.070 4 C -0.104 4.104 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.133 4.133 9 C -0.027 4.027 10 N -0.182 5.182 11 C -0.038 4.038 12 C 0.365 3.635 13 O -0.445 6.445 14 N -0.313 5.313 15 C -0.056 4.056 16 C 0.036 3.964 17 H 0.109 0.891 18 C -0.170 4.170 19 C 0.031 3.969 20 N -0.347 5.347 21 C -0.369 4.369 22 H 0.096 0.904 23 C -0.255 4.255 24 N -0.596 5.596 25 Si 0.810 3.190 26 H -0.194 1.194 27 H -0.219 1.219 28 H -0.213 1.213 29 C 0.005 3.995 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.204 0.796 34 H 0.184 0.816 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.148 0.852 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.008 0.992 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 11.291 27.341 5.788 30.142 hybrid contribution -0.328 -1.092 -0.165 1.152 sum 10.963 26.249 5.623 28.997 Atomic orbital electron populations 1.20897 0.88433 1.03892 1.04162 1.20590 0.98746 0.91970 1.01076 1.21716 0.92218 0.98925 0.94114 1.19259 0.94933 0.94766 1.01479 1.21393 0.94454 0.97268 0.98420 1.21455 0.94844 0.98898 0.97245 1.21323 1.01897 0.91472 0.96385 1.21024 0.90596 1.00617 1.01095 1.19280 0.95049 0.88038 1.00293 1.67811 1.06203 1.32280 1.11900 1.20859 0.90327 0.93097 0.99529 1.18371 0.79133 0.83153 0.82890 1.90758 1.49702 1.71073 1.32953 1.47735 1.46470 1.25111 1.11959 1.21815 0.96437 1.00599 0.86789 1.21940 0.91048 0.83164 1.00216 0.89086 1.23220 0.98312 0.98055 0.97373 1.21744 0.86201 0.87649 1.01273 1.44701 1.12678 1.23290 1.54072 1.19442 0.98809 0.97011 1.21659 0.90428 1.25619 0.96180 1.02564 1.01158 1.70014 1.07256 1.40173 1.42159 0.84957 0.77543 0.78754 0.77717 1.19421 1.21932 1.21310 1.21556 0.94203 0.91081 0.92691 0.88991 0.93268 0.87901 0.79608 0.81648 0.81802 0.82422 0.85157 0.92371 0.89528 0.90302 0.89526 0.89971 0.89782 0.99239 0.94073 0.94614 0.96964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.67 71.24 0.69 -1.49 16 2 C -0.12 -2.68 5.89 -19.77 -0.12 -2.80 16 3 C -0.04 -0.70 9.54 22.48 0.21 -0.49 16 4 C -0.10 -1.83 5.75 -21.22 -0.12 -1.95 16 5 C -0.10 -1.01 9.77 22.31 0.22 -0.79 16 6 C -0.11 -0.92 9.95 22.07 0.22 -0.71 16 7 C -0.09 -1.08 9.94 22.04 0.22 -0.86 16 8 C -0.11 -2.21 9.99 22.38 0.22 -1.99 16 9 C 0.10 2.32 6.61 40.49 0.27 2.59 16 10 N -0.47 -14.21 10.17 -177.77 -1.81 -16.02 16 11 C 0.12 3.44 4.70 42.29 0.20 3.64 16 12 C 0.58 20.40 5.94 86.91 0.52 20.92 16 13 O -0.57 -23.82 15.81 -3.71 -0.06 -23.88 16 14 N -0.58 -19.74 2.88 -818.88 -2.36 -22.10 16 15 C 0.09 2.42 8.93 127.77 1.14 3.56 16 16 C 0.14 5.49 3.35 46.18 0.15 5.65 16 17 H 0.09 3.85 7.01 -2.39 -0.02 3.84 16 18 C -0.13 -4.95 6.59 31.99 0.21 -4.74 16 19 C 0.16 7.82 5.89 86.86 0.51 8.33 16 20 N -0.62 -33.11 3.39 -691.98 -2.35 -35.45 16 21 C -0.24 -13.80 10.27 84.03 0.86 -12.94 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 24 N -0.95 -56.25 10.09 21.65 0.22 -56.04 16 25 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 28 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 29 C 0.13 5.96 6.88 86.73 0.60 6.56 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.24 6.39 -2.39 -0.02 1.22 16 32 H 0.10 1.29 8.11 -2.39 -0.02 1.27 16 33 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 34 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 35 H 0.16 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 39 H 0.09 2.42 6.13 -2.39 -0.01 2.41 16 40 H 0.08 1.91 6.99 -2.38 -0.02 1.89 16 41 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.08 2.88 6.14 -2.39 -0.01 2.86 16 43 H 0.08 4.67 5.87 -2.39 -0.01 4.66 16 44 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 45 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.04 1.58 7.06 -2.39 -0.02 1.56 16 47 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -77.05 379.13 3.13 -73.93 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.98 Total: 12.07 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.47 Total: 19.39 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -6.30 Total: -129.60 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.05 3.13 -73.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033278757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.098 kcal (2) G-P(sol) polarization free energy of solvation -77.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds