Wall clock time and date at job start Tue Mar 31 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39322 * 119.11635 * 2 1 4 4 C 1.36575 * 119.90591 * 180.02562 * 3 2 1 5 5 C 1.40886 * 118.16160 * 359.97438 * 4 3 2 6 6 C 1.40179 * 121.22766 * 180.27743 * 5 4 3 7 7 C 1.38558 * 119.40306 * 180.23746 * 6 5 4 8 8 C 1.47761 * 119.80515 * 179.75187 * 7 6 5 9 9 O 1.21566 * 120.00392 * 335.08721 * 8 7 6 10 10 N 1.34780 * 120.00057 * 154.80489 * 8 7 6 11 11 C 1.46498 * 119.99466 * 355.02172 * 10 8 7 12 12 C 1.46499 * 120.00090 * 175.01577 * 10 8 7 13 13 H 1.09001 * 110.63952 * 358.31595 * 12 10 8 14 14 C 1.55159 * 110.71980 * 234.97695 * 12 10 8 15 15 C 1.54903 * 101.58355 * 277.14257 * 14 12 10 16 16 N 1.47425 * 104.83461 * 322.98826 * 15 14 12 17 17 C 1.36932 * 125.65132 * 204.09567 * 16 15 14 18 18 H 1.08001 * 120.00233 * 180.02562 * 17 16 15 19 19 C 1.38810 * 120.00099 * 0.04250 * 17 16 15 20 20 N 1.31624 * 119.99735 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00139 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47035 * 89.99575 * 21 19 17 23 23 H 1.48500 * 109.47174 * 209.99743 * 21 19 17 24 24 H 1.48502 * 109.47169 * 329.99951 * 21 19 17 25 25 C 1.47029 * 108.69967 * 24.13306 * 16 15 14 26 26 C 1.40629 * 120.38991 * 359.47938 * 7 6 5 27 27 C 1.35703 * 120.91805 * 0.27584 * 26 7 6 28 28 C 1.40756 * 120.11585 * 359.97438 * 27 26 7 29 29 N 1.31116 * 119.11833 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47258 * 90.00342 * 1 2 3 31 31 H 1.09000 * 109.46772 * 210.00477 * 1 2 3 32 32 H 1.09004 * 109.47282 * 330.00419 * 1 2 3 33 33 H 1.08001 * 120.04398 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.91514 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.30095 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47319 * 95.86163 * 11 10 8 37 37 H 1.09005 * 109.46882 * 215.85397 * 11 10 8 38 38 H 1.08998 * 109.47515 * 335.85439 * 11 10 8 39 39 H 1.09005 * 111.00424 * 35.21809 * 14 12 10 40 40 H 1.08995 * 111.00134 * 159.06415 * 14 12 10 41 41 H 1.09006 * 110.36471 * 204.15218 * 15 14 12 42 42 H 1.09002 * 110.46042 * 81.88024 * 15 14 12 43 43 H 0.97004 * 119.99198 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.87916 * 239.52630 * 25 16 15 45 45 H 1.08993 * 109.88670 * 118.35892 * 25 16 15 46 46 H 1.07998 * 119.54346 * 180.29406 * 26 7 6 47 47 H 1.07998 * 119.93869 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2172 0.0000 4 6 3.5505 1.2360 -0.0005 5 6 4.2325 0.0032 -0.0005 6 6 5.6332 -0.0525 0.0048 7 6 6.2650 -1.2856 -0.0004 8 6 7.7410 -1.3547 -0.0005 9 8 8.3929 -0.4274 -0.4399 10 7 8.3647 -2.4433 0.4919 11 6 7.5856 -3.5097 1.1259 12 6 9.8217 -2.5602 0.3929 13 1 10.2415 -1.7005 -0.1294 14 6 10.2196 -3.8838 -0.3121 15 6 10.1515 -4.8935 0.8607 16 7 10.6517 -4.1481 2.0301 17 6 11.2079 -4.7025 3.1518 18 1 11.5449 -4.0676 3.9578 19 6 11.3388 -6.0807 3.2529 20 7 10.9279 -6.8546 2.2706 21 14 12.0969 -6.8372 4.7834 22 1 11.0303 -7.1148 5.7786 23 1 12.7795 -8.1057 4.4225 24 1 13.0836 -5.8924 5.3658 25 6 10.4536 -2.7106 1.7928 26 6 5.5097 -2.4719 0.0002 27 6 4.1532 -2.4349 0.0002 28 6 3.4805 -1.1985 0.0001 29 7 2.1450 -1.1455 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6313 2.1445 -0.0004 34 1 4.0926 2.1701 -0.0010 35 1 6.2147 0.8576 0.0085 36 1 7.3819 -4.2937 0.3965 37 1 8.1514 -3.9268 1.9590 38 1 6.6440 -3.1022 1.4939 39 1 9.5030 -4.1419 -1.0919 40 1 11.2298 -3.8225 -0.7167 41 1 10.7894 -5.7539 0.6581 42 1 9.1234 -5.2153 1.0272 43 1 11.0199 -7.8177 2.3412 44 1 11.4131 -2.1942 1.8237 45 1 9.7841 -2.2990 2.5479 46 1 6.0163 -3.4257 0.0009 47 1 3.5889 -3.3557 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033519308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:47 Heat of formation + Delta-G solvation = 75.461680 kcal Electronic energy + Delta-G solvation = -28923.393452 eV Core-core repulsion = 25072.897944 eV Total energy + Delta-G solvation = -3850.495507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24246 -40.03044 -37.75478 -36.95270 -34.66167 -33.74806 -32.63464 -31.76891 -30.34157 -29.39328 -28.50056 -27.77354 -26.38192 -24.58290 -23.99303 -23.43870 -22.31543 -20.91273 -20.20368 -19.03698 -18.63588 -17.44672 -17.00507 -16.66367 -16.19687 -15.63462 -15.25231 -14.95279 -14.73933 -14.71923 -14.33424 -14.08199 -13.76842 -13.75161 -13.36149 -13.26397 -13.01978 -12.74380 -12.56941 -12.28709 -12.21610 -12.12541 -11.86151 -11.65803 -11.49101 -11.09948 -11.07343 -10.92195 -10.85140 -10.81214 -10.37327 -10.14972 -9.90409 -9.76455 -9.61910 -9.54630 -8.88412 -8.69699 -8.52851 -8.26472 -6.88876 -5.70320 -3.12171 0.02650 0.45704 1.69231 2.29466 3.09896 3.24285 3.37148 3.42891 3.44371 3.86549 3.87162 4.27474 4.38574 4.44388 4.46375 4.52429 4.77744 4.87723 4.96422 5.08754 5.18681 5.22147 5.36124 5.39479 5.40216 5.47959 5.51935 5.60077 5.62301 5.68907 5.73624 5.75987 5.81347 5.86248 6.03630 6.11402 6.17305 6.25304 6.27858 6.33295 6.52715 6.53370 6.56223 6.68009 6.98107 7.41747 7.58100 7.62136 7.65730 7.80281 8.27939 8.31070 9.17134 9.77476 10.41677 11.33232 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002422 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.465917 B =11557.827840 C =12228.297326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.163 3.837 3 C -0.180 4.180 4 C -0.043 4.043 5 C -0.120 4.120 6 C -0.030 4.030 7 C -0.126 4.126 8 C 0.555 3.445 9 O -0.546 6.546 10 N -0.585 5.585 11 C 0.059 3.941 12 C 0.126 3.874 13 H 0.101 0.899 14 C -0.155 4.155 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.127 3.873 26 C -0.086 4.086 27 C -0.105 4.105 28 C 0.149 3.851 29 N -0.479 5.479 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.021 0.979 43 H 0.252 0.748 44 H 0.034 0.966 45 H 0.027 0.973 46 H 0.157 0.843 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.708 13.277 -6.437 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.010 3.990 3 C -0.200 4.200 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.050 4.050 7 C -0.129 4.129 8 C 0.344 3.656 9 O -0.425 6.425 10 N -0.316 5.316 11 C -0.083 4.083 12 C 0.022 3.978 13 H 0.119 0.881 14 C -0.194 4.194 15 C 0.020 3.980 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 C -0.106 4.106 27 C -0.123 4.123 28 C 0.027 3.973 29 N -0.189 5.189 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.174 0.826 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.654 12.675 -6.556 23.486 hybrid contribution 0.810 0.332 0.853 1.222 sum -17.844 13.007 -5.703 22.807 Atomic orbital electron populations 1.20799 0.88571 1.03760 1.03352 1.21558 0.97216 0.88255 0.91950 1.21698 0.94971 0.99286 1.04054 1.21547 0.94499 0.97289 0.93569 1.18769 0.94324 0.94322 1.04746 1.21379 0.92262 0.97824 0.93499 1.19969 0.93582 0.94089 1.05247 1.18250 0.86922 0.82299 0.78165 1.90744 1.66900 1.36758 1.48095 1.47680 1.07782 1.19314 1.56807 1.22624 0.96527 0.89913 0.99249 1.22197 0.78037 0.99624 0.97905 0.88104 1.23366 1.00702 0.96052 0.99315 1.22122 0.98666 0.94404 0.82804 1.44541 1.71485 0.99130 1.17773 1.19066 1.32072 0.90173 0.93726 0.90523 1.24771 1.01495 0.95935 0.98349 1.69794 1.52574 1.03481 1.31191 0.86078 0.78739 0.78656 0.82052 1.21650 1.21665 1.20734 1.21635 0.97080 0.88166 0.93104 1.21862 0.93931 0.99313 0.95489 1.20707 0.93738 0.96527 1.01368 1.18987 0.89019 0.92983 0.96282 1.67901 1.08386 1.28720 1.13884 0.90051 0.90181 0.90455 0.84432 0.84044 0.84045 0.91908 0.88299 0.90722 0.91993 0.90881 0.87626 0.96101 0.93720 0.94849 0.95503 0.82602 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.14 36.00 0.37 -0.27 16 2 C 0.16 1.53 6.78 -82.50 -0.56 0.97 16 3 C -0.18 -1.43 9.64 -39.78 -0.38 -1.82 16 4 C -0.04 -0.39 9.89 -39.18 -0.39 -0.78 16 5 C -0.12 -1.40 5.74 -106.82 -0.61 -2.01 16 6 C -0.03 -0.37 9.34 -38.74 -0.36 -0.74 16 7 C -0.13 -1.73 5.49 -104.98 -0.58 -2.31 16 8 C 0.55 9.14 7.48 -12.37 -0.09 9.04 16 9 O -0.55 -10.39 15.96 5.31 0.08 -10.30 16 10 N -0.59 -9.69 2.82 -172.98 -0.49 -10.18 16 11 C 0.06 0.89 6.69 59.85 0.40 1.29 16 12 C 0.13 2.29 3.58 -66.10 -0.24 2.06 16 13 H 0.10 1.85 7.01 -51.93 -0.36 1.49 16 14 C -0.15 -2.88 6.53 -24.58 -0.16 -3.04 16 15 C 0.14 3.27 5.02 -2.53 -0.01 3.26 16 16 N -0.60 -14.69 2.99 -170.07 -0.51 -15.20 16 17 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -25.79 10.09 55.49 0.56 -25.23 16 21 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.13 2.64 6.20 -3.06 -0.02 2.63 16 26 C -0.09 -1.04 7.41 -39.59 -0.29 -1.33 16 27 C -0.10 -1.23 9.95 -39.54 -0.39 -1.62 16 28 C 0.15 1.87 6.61 -84.78 -0.56 1.30 16 29 N -0.48 -5.77 10.23 -7.16 -0.07 -5.84 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.14 1.65 7.82 -52.49 -0.41 1.24 16 36 H 0.06 0.86 6.70 -51.93 -0.35 0.52 16 37 H 0.10 1.82 5.65 -51.93 -0.29 1.53 16 38 H 0.07 0.97 5.10 -51.93 -0.26 0.71 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.11 2.76 5.87 -51.93 -0.31 2.45 16 42 H 0.02 0.48 5.49 -51.93 -0.29 0.19 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 46 H 0.16 1.73 4.39 -52.49 -0.23 1.50 16 47 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -31.92 370.37 -10.27 -42.19 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.27 Total: 2.28 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -4.13 Total: 0.14 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.51 Total: -56.46 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.92 -10.27 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033519308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.649 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds